Tmul013289.2
Basic Information
- Insect
- Toxonevra muliebris
- Gene Symbol
- -
- Assembly
- GCA_963691655.1
- Location
- OY829327.1:90783266-90785357[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1 82 4.6 0.1 10 23 204 218 202 218 0.92 2 12 2.1 1.7e+02 3.6 1.6 1 23 225 248 225 248 0.95 3 12 0.0068 0.55 11.4 2.2 1 16 282 297 282 306 0.87 4 12 4.4e-06 0.00035 21.5 4.9 2 23 313 334 312 334 0.97 5 12 2.8e-05 0.0023 18.9 1.6 1 23 340 363 340 363 0.93 6 12 0.0039 0.31 12.2 4.0 2 23 371 392 371 393 0.94 7 12 1.2e-05 0.00094 20.1 1.9 2 23 403 425 402 425 0.94 8 12 0.00068 0.055 14.6 0.1 1 23 440 462 440 462 0.97 9 12 0.00051 0.041 15.0 0.7 1 23 469 492 469 492 0.91 10 12 1.1e-06 8.4e-05 23.4 0.2 1 23 498 520 498 520 0.99 11 12 5.1e-05 0.0041 18.1 1.6 1 23 530 552 530 552 0.99 12 12 7.6e-06 0.00061 20.7 1.1 1 23 557 580 557 580 0.96
Sequence Information
- Coding Sequence
- atggaattgaaaaatgttcTTGATTGCTTGTTAGAATGGGAGTGGAGATTGGATGACGATCGAATGCCACAAAAAGTCTGTAAAGAATGTGAAGAGGTGCTCattaagataaacaaatttcgtGAAAAGGCaataaaagcgaaaaaatatttagaaacactttttccaaaaactgaTTATACAAACGAACGGGAAACTATCAGCGAGCCTATGTACAAAATTGAAGCACAAAGTGAGAATTGCCAAGAGCTAAACCCGGAATTTGATAATTCATCTAATGAAACATTAGATACAGATGATAATACTAACATGGATGCGTCGCCACCAGAATTTGAAGCGATTAAAGTTGAATCAGAGCAAATGCTAATAGggaatgaaaaagaagaaaattggaaGAAGGAAAATGAACACGATCGCATTGATATACAAAGTGAATTGGAAGGAGAAGATGGTCAAGATTTAATTTGCAACACGACTGaagaaaaaagaacagaaagTACTATAAATTGCAAGGAAGACACTAAACACAACAAATGTCGACGACGACAACCTAATTCTATGAGTGAGCATTGTATGTTTTGTATAGGTAAAATTGCGGACCAACCGCACTTTCCAACAAAACAAGCACTACAAGAACATATCCGCCAAGTACATACCGACAAAGAACGTCCTTACAATTGCCCTCACTGCATAGCGAAGTATCGAAGCAAAGGTGGCTGCCTTGTTCATATAAATACTATACACTTGAAGAAAACGATGCAATGCGAGACTTGTAACAAGGATATTATTGGTGGTGCGGGAAAATTACGCGTTCATATCGAGCGAAATCACACCAAGGGCGATTATAAATGTGATATATGTGGCAAAGAATTCAAAAGTACTAcgttacttaattttaattatcacAAACGCTGGCATATGGATGATAAGTTGCTAAAATGTTCACATTGTGAGAAATCATTTGTTCGAAGCTCACATTTACGTTCACATTTAGTAACACACACGAAACAGGGTGCATTTCTTTGCACTCATTGCGGGAAGAGCACAAGAAATAAATGGGAGCTGCGTGCGCATTTGTACTCCATACATGGAGAAGGAGAGGCACCTGCTAGCTGTGATTATTGTGATCAAAagtttgcACGCTACGCACACAAGCGCATACACATGGATAGACACCACGCAGACAAATTTGCAGAGAATGAAATTCAATGTCACATATGTCAGCGAAAGTTTGCAAGTGATTCAAATTTACAACGACATCTAAAGTTCCCGCATAAACCaaaaaacgcggaaaaaaagccCCCACCTTATGAAACATTCCAATGCCCTTTATGTCCGCGTAAATTTCGTGCTGAATATGTTCTGACAAAGCACGCAGAAGTACATTCTATGGTAGGAAGACCCTTTCCGTGTGATGAATGCGATATGAGCTTTAAGAATGCATCTATTCTGAAGAAACACAAAGATCAAAAACATTCAACAGAACGACCgtataaatgtgaaaaatgccCGAAAGTATTTGCACTCAAGTCAGCATTAAAAATGCATATACAAATTCATGAAAGTACAATCattaatgagaaaaaatttcaatgtccTGAATGTAATcggaaatataaatttgaaaaatcccTGTTACTACATCAGCTAACACATTCCCAAATGAAGCATTCGTGCGATAAATGTGGTAAATCATACATCAAACCTGAGCAGTTGATTTCTCATATAAATCGGTATcataaggaaataaaaaaaacggtgCAAAATTGA
- Protein Sequence
- MELKNVLDCLLEWEWRLDDDRMPQKVCKECEEVLIKINKFREKAIKAKKYLETLFPKTDYTNERETISEPMYKIEAQSENCQELNPEFDNSSNETLDTDDNTNMDASPPEFEAIKVESEQMLIGNEKEENWKKENEHDRIDIQSELEGEDGQDLICNTTEEKRTESTINCKEDTKHNKCRRRQPNSMSEHCMFCIGKIADQPHFPTKQALQEHIRQVHTDKERPYNCPHCIAKYRSKGGCLVHINTIHLKKTMQCETCNKDIIGGAGKLRVHIERNHTKGDYKCDICGKEFKSTTLLNFNYHKRWHMDDKLLKCSHCEKSFVRSSHLRSHLVTHTKQGAFLCTHCGKSTRNKWELRAHLYSIHGEGEAPASCDYCDQKFARYAHKRIHMDRHHADKFAENEIQCHICQRKFASDSNLQRHLKFPHKPKNAEKKPPPYETFQCPLCPRKFRAEYVLTKHAEVHSMVGRPFPCDECDMSFKNASILKKHKDQKHSTERPYKCEKCPKVFALKSALKMHIQIHESTIINEKKFQCPECNRKYKFEKSLLLHQLTHSQMKHSCDKCGKSYIKPEQLISHINRYHKEIKKTVQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01133118;
- 90% Identity
- -
- 80% Identity
- -