Basic Information

Gene Symbol
SMARCC2
Assembly
GCA_963691655.1
Location
OY829327.1:90436313-90440659[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 8.7 1.8e+04 -3.4 0.1 35 43 204 212 202 213 0.82
2 2 7.3e-15 1.5e-11 44.9 0.2 3 44 662 703 660 705 0.95

Sequence Information

Coding Sequence
ATGAACAATTTAGGTCCGAAAAAGGACGGTAGTCCAAATGTGGACTTTTATCAATCACAAGAAACGTTGCAGGGCTTCGAAACCATTCGTCAGtatctacaaaaaaattgtaaaaaaTATTTAGCAAATAGTGCTGAACCTATTACAAAGGAATCTCTCGCACAATTATTAATTCAATTCCTGCAATATGTGGAAGCGAAATTGGGCAAGAACTCGCAGGAGCCACCGGCAACAAGAATTCCGATGCGTTGCTTTCTTGACTTTAAACCTGGCGGTGGCCTGTGCGTAATTTTCTCCACAATGTTTCGTTTCCGCACCGAACAGCGTGGCAAAAAATTCGATTTCTCCGTTGGCAAGAATCCACCACGCAAGGATCCCAATATACAATTGCTGATCGATATTGAACAAGCACTCGTTGAAGCTGATCTATATCGTATACCATACATTTATATACGCTCAGAGATCGAGAAATCCTTTGCTACGCGTCTACGTGAAATACTCTCAACACGTCGAGTAGAAATCGTCACCGACGAAGAGGAAGCCACGCATATTATTTACCCAGCAGTTGATCCACATCCGGATGAGTATGCACGCCCCATATTCAAACGTGGCAGTCATGTAATGCTGCATTGGTATTACTTTCCCGAATCGTATGATTCTTGGACAATCAATTCCTTTGAATTGCCCGATAATGTGCCAGAGAATCCGGAGTCACCTGCCGATCGTTGGCGCGTTTCGGCTTCATGGATCTTGGACTTGGAACAGTATAACGAATGGATGGCTGAGGAGGATTATGAAGTAGACGATGCTGgcaaaaagaaaatgcataaaCAACGTTTGTCTATCGATGATATTATGGCTTTCAGTCCTGATGAAAAAAAGAAACCGAGCGGTAGTACAAGTGGTAGCGGTGCTAGTACATCGAAGCAAAAGCGTCGCCGTTCTCCATCGCCGACAACGTCTAAACCAGGAAAGCGTAAGCGTTCGCCAGCTGTGCTGCATAAGAAATCGCgtaatgaagatgatgatgaggatTTAACGCGTGACTTTGACGATCCAACGGTAGAACCGAATGTGCAGGAGGTTGTGAAGTCGTCGTCATTGCAGTCGACGGCCAGTCCAGCTCCAGGTGGTAAATCACGGGCTGATAATGATATGATGCCAATTAAAGggGGTACTATGACTGATTTGGATGATGAAATGACTGGTGGAAGTGCAGCACAAGCGCTATCCACTTGCGACGGTGAGAATTCACAAACTGGCAAAACTAGCGATAACAGCAATACGCAAGAATTCTCCTCCTCCGCCAAAGAGGACATGGAAGACAATGTTACTGAGCAAACGCATCACATTATTGTTCCCTCATATTCAGCCTGGTTCGATTACAATTCCATACATGTAATTGAGAAGCGTGCAATGCCAGAGTTTTTCAACAGCAAGAATAAATCTAAGTCCCCAGAGATTTACATGGCATACCGAAACTTTATGATTGATACTTATAGATTGAATCCTACAGAATATTTGACCAGCACAGCTTGTCGTCGCAATTTGGCGGGCGATGTTTGCGCTATTATGCGCGTGCACGCTTTCCTCGAGCAATGGGGTCTCATCAATTATCAAATAGATGCTGAGTTGCGTCCCACGCCAATGGGCCCACCACCCACTTCACATTTCCATATACTCTCCGATACACCATCTGGATTGCAGTCGCTAAACCCTCAAAAGACACAACAGCCATCTGCTGCAAAGACGTTATTAGATTTGGATAAGAAGCCACCAATTATTGGCAAAGATAGCAAGGAGGGCTCCGTAGAGGCTGATAAGCCTGGTGTTGCCAGTGTTCCGCCAATTATCAAAACTGAGCCTGGAATGATAGAGAATGGCAGCATCACAAACGCCGGTGGGGCATTTGGATTGAAACTTGATCAATATGCCAAGAAACCAGCGGCTATGAAGAATCGTACTGCTGCGAGCATGACTCGCGAATGGACAGATCAGGAAACACTATTGTTGCTGGAGGGTCTGGAAATGCACAAAGACGATTGGAATAAGGTGTGTGAACATGTTGGCACACGAACACAGGATGAATGTATATTGCATTTCCTACGTTTACCCATTGAGGATCCATATCTGGAAGATGATGGCGGCTTCTTAGGTCCGCTCGGTTGTCAGCCAATACCGTTTAGTAAGTCGGGAAATCCTATTATGTCGACAGTGGCGTTTTTGGCCTCGGTGGTAGATCCACGAGTGGCTGCGGCTGCTGCCAAAGCGGCTATGGAAGAATTTGCCGCTATTAAGGATGAGGTTCCCGCTACAATTATGGACAACcacatgaaaaatgttgaaaaggcTTCAGCCGGTGGTAAATTTAATCCTACATTTGGTTTGTCCAACAGTGGCATTGCTGGCACTGGTGCTGAAAAAGAAGACGAAGACTCAAATGCCCCTTCAACAGGACCTAGCGCATCTGGTGGTGCACTAGATGAGGAAATGAAGGATATTTcgaaaaaagATGTATCCAAATCAAGTGATGACAAGACAAAAGACAAAAGCGACTCGGATAGCGATAGTAAAAAAGATGATAATACCAGAACCCCTAATATTGATACCACAGGTTCACAAACTAAATCATCTCCAACTCCCTCCTCATCCACAGACGCCGATGCCATTAAAGAGATCAGAACAGATGAAATCAATGATGCGGATGGTACATCAAAGGATGGTGACCCCGGTAAGCAGGTATTCAATGAGTCCAATGTTCAGACGGCTGCCGCAGCTGcacttgcttctgctgctgttaaAGCAAAGCATTTGGCTGCGCTGGAAGAGCGCAAAATCAAATCGCTTGTAGCCTTGCTGGTAGAAACACAAATGaagaaattggaaattaaattgCGACACTTTGAGGAACTTGAAACTACAATGGAACGTGAACGTGAGGGCCTTGAATATCAGCGTCAACAGCTCATCACCGAACGACAGCAATTCCATTTGGAACAGCTAAAGGCAGCTGAATTCCGTGCGCGGCAACAGGCTCATCATCGATTACAACAGGAACAGCAATGGCAAGGTACTGCTGGCGCTGCTGGTGGTCCACCATCTGGAGGACCTGGTGGTGTACCGCCCGGTCAGCCAATGGCTGCTGGTGCTGCTCCTGCTCCCAGTGGCAGCAGCGCAGGTCCTCAAATGACACCGAATACTCTAGCTGGTACTGCAGGAGCCGGCACTGGTGCAGCACCTGGTGGTCCAATCAGTGGTGTTGGCAGTGCTCAACAAACACAACCGCCTCAGGCAACACACGTTTCCCCACCTTCTGTTACAGGTGCATCAACGTCTACAATCGCAATGGatACTACTCCTCCGTCTGCTACAGGCTCATCTGCTCCATCTTCAGATGCAATTCATGTACCCACAGCGCCTGGCCAACCCCTTATACCAGCCTCGGTAAACTCTGCAATGCCACTCTCTGCTGCAGCTGCTGCACAACCACCACCACAACCAAATGCTCCACCTAGCATTCCACTTGTTGCTGTTGGCATTCCATCTGTAGCTCCACCATCTTAA
Protein Sequence
MNNLGPKKDGSPNVDFYQSQETLQGFETIRQYLQKNCKKYLANSAEPITKESLAQLLIQFLQYVEAKLGKNSQEPPATRIPMRCFLDFKPGGGLCVIFSTMFRFRTEQRGKKFDFSVGKNPPRKDPNIQLLIDIEQALVEADLYRIPYIYIRSEIEKSFATRLREILSTRRVEIVTDEEEATHIIYPAVDPHPDEYARPIFKRGSHVMLHWYYFPESYDSWTINSFELPDNVPENPESPADRWRVSASWILDLEQYNEWMAEEDYEVDDAGKKKMHKQRLSIDDIMAFSPDEKKKPSGSTSGSGASTSKQKRRRSPSPTTSKPGKRKRSPAVLHKKSRNEDDDEDLTRDFDDPTVEPNVQEVVKSSSLQSTASPAPGGKSRADNDMMPIKGGTMTDLDDEMTGGSAAQALSTCDGENSQTGKTSDNSNTQEFSSSAKEDMEDNVTEQTHHIIVPSYSAWFDYNSIHVIEKRAMPEFFNSKNKSKSPEIYMAYRNFMIDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQIDAELRPTPMGPPPTSHFHILSDTPSGLQSLNPQKTQQPSAAKTLLDLDKKPPIIGKDSKEGSVEADKPGVASVPPIIKTEPGMIENGSITNAGGAFGLKLDQYAKKPAAMKNRTAASMTREWTDQETLLLLEGLEMHKDDWNKVCEHVGTRTQDECILHFLRLPIEDPYLEDDGGFLGPLGCQPIPFSKSGNPIMSTVAFLASVVDPRVAAAAAKAAMEEFAAIKDEVPATIMDNHMKNVEKASAGGKFNPTFGLSNSGIAGTGAEKEDEDSNAPSTGPSASGGALDEEMKDISKKDVSKSSDDKTKDKSDSDSDSKKDDNTRTPNIDTTGSQTKSSPTPSSSTDADAIKEIRTDEINDADGTSKDGDPGKQVFNESNVQTAAAAALASAAVKAKHLAALEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAHHRLQQEQQWQGTAGAAGGPPSGGPGGVPPGQPMAAGAAPAPSGSSAGPQMTPNTLAGTAGAGTGAAPGGPISGVGSAQQTQPPQATHVSPPSVTGASTSTIAMDTTPPSATGSSAPSSDAIHVPTAPGQPLIPASVNSAMPLSAAAAAQPPPQPNAPPSIPLVAVGIPSVAPPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01132853;
90% Identity
iTF_01132853;
80% Identity
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