Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.2e-11 2e-08 34.5 0.0 5 43 1 39 1 41 0.93

2 4 0.26 4.4e+02 1.3 0.0 14 38 58 81 50 85 0.83

3 4 7.1 1.2e+04 -3.2 0.0 31 42 91 103 91 104 0.77

4 4 0.02 33 4.9 0.1 28 38 139 149 112 156 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.2e-11	2e-08	34.5	0.0	5	43	1	39	1	41	0.93
2	4	0.26	4.4e+02	1.3	0.0	14	38	58	81	50	85	0.83
3	4	7.1	1.2e+04	-3.2	0.0	31	42	91	103	91	104	0.77
4	4	0.02	33	4.9	0.1	28	38	139	149	112	156	0.81

Coding Sequence: ATGCAGCTAGCTGTTGCCGCCGTATTAAACGAAGGCATCAGCATTGGAAGGGCAGCGAAAAAATTCAAGGTAGTCAAATCAACATTATGGTCACGTTTAACAGAGCACCCAAATCGTAGGCGTCAAAAAAACAATCAAGAACTAAGTGAACTTATACGCAGTAAATTGGCAGAAGGCTTTTCACTATCGGAGATTTCGCGTAGGCTTGATGTAGCCAAATCAACTGTATTTATGCATAAGACGCGCCTCACCAAAGAAGGTATGTTGCCGTCCGTGTTACAAACGCGTAGCAAACGTGGGGCAGGCATGACTCCAACCAATCACAGTACACTCATGCGAGAAAGTTTAAAGCAAGCATATAAGGACTATAGTTTACATAATATGACTGTGCGTTCGACGGCCAAATGCTGTGTAGTACCATTGACAACACTTTGGCGTTATATCAAACAATTAAAAGCTTCCACGAATAATGTAGATGAAGTGAAAGAATTACATGAGATCGAAGAAGCGAAACAAAATGGTGAAACTCAAGACCTGGAGAAAGTTGATAATGTGGAAGAAGTTCAAGATATAGAGGAAGTGAATGATGAAGAAGATGTTGCACAAATTGTGGAAAAAGTGACAGAAATGGAACGCGTGCTTGAAACTGTATCAAACGTACAAAAAGTATTAGAAGACAATGAAATTGTTAGCTCTGAGCTATTAATGTATACGACTGAAATCACGAATGACAATACACAGTTGTGGGGTTTGTATGAATACGTAAATCAACCGACAATATTGCAAATCCCACATGATCATGCTGATAACATTGTGAATAATTCAATAGACATTGATgaactatttaattttacaatcatctaa
Protein Sequence: MQLAVAAVLNEGISIGRAAKKFKVVKSTLWSRLTEHPNRRRQKNNQELSELIRSKLAEGFSLSEISRRLDVAKSTVFMHKTRLTKEGMLPSVLQTRSKRGAGMTPTNHSTLMRESLKQAYKDYSLHNMTVRSTAKCCVVPLTTLWRYIKQLKASTNNVDEVKELHEIEEAKQNGETQDLEKVDNVEEVQDIEEVNDEEDVAQIVEKVTEMERVLETVSNVQKVLEDNEIVSSELLMYTTEITNDNTQLWGLYEYVNQPTILQIPHDHADNIVNNSIDIDELFNFTII

Sequence clustering based on sequence similarity using MMseqs2