Basic Information

Gene Symbol
JARID2
Assembly
GCA_963691655.1
Location
OY829326.1:18707491-18723788[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.6e-21 4e-18 66.2 0.0 7 89 1947 2027 1942 2027 0.92

Sequence Information

Coding Sequence
ATGGTGGTATCTAAAGACTCCAAGCGAAAACGCAAGGAGTCCCCACAAACTCAATCGGCAGTGGAGTCGTCACCAGAAATGCCCAAAAGGACAAAAGTACAAGCTCAACGAAAATTTGCACAAGGGCAAAGTGCACCAGCATCTTCATCATACAATTCAGTAATTGCTGCTTCATCATCTTCTAATACAGGACCAAGCACATCATCTGAAAGTCGTGAGCCGCCAACAGAGATATTACCAAATAAACGACCTAAGACAGAAGATTTCCTCACGTTTTTGTGTTTCCGCGGGACGCCGGCGCTACCGGCTCattgtgattttttaaatcaaggtAATCCCAAAGACACTGAAATACCACCAGTCAAGAAAAGTGCGCCAAAACcagcaaaagcagcaaaaaaatcCAAGAAAGGGAGAACTAAAGCGGTTGCTAAAAATGAAGAGCCAACAGCATCTACTTCTACAGCACAATCAACTGCGCCGCCAGcatcaaataatgataaaaatgaaacaattacaacaaaagtggtacaaatagaagaaaataacgTGACTGAGGTGACAGCACCAGCCACATCAGCAACATCAGCGCCTTCACTGGTACCATCGACCGAAGATGCCGTTATACCATTCGCTGTGCGAAAAAGAGCAGAAGTTACAACGGATGGTAATAGGCGTAGTCGTGCAACGGAACGACAATTACGTAATGCGGAAAAGTGCAATAATTCGCCCGAAATAAAACGACGTTCAAATCGAACTGGTATTAAAGATTTAAAACCAATTACTACAGACCTTGAAACAGACGATGACGATGAAGAGTATTTTTCAGCAAACGATGAAGCCGCTAAAATGGAAGAATCCGGAAAGGAACAAAGAAATGAggcaaaaaaatccaaaactcCAATTTTGCCGGAAAGGAAATCTGAAACACCATCAAAAGAAAGTGAAACGGGAAAAACGCGAAAAGGTAGGCCAGCGTCTACAACGAAGAAGGCTACTAAAGATATTTTGAAAGAGAATTCAGTAGATGAGAATACACTAAAAGATTGTCCAAAAGTATTGCAAAAACCAGAACAACTAGCATCAGTTAAGGAGAAAGCACCAGTGAAACGTCCAAGGCAAAAAGAATCACCCATATTTATTCCTTCGCCTGAACCATCGGGACGCATGACAAGACAGAGAGCATTTTTTGAACCAGTGAAAGTACCACATCGTAATGAGGAAACTGAAATAGATAAGACGGCGAAACCGCCAGCAAAGATAGAAgtaattaaaactgaaattgtaAGCAAAACTGAAAACGTCGATGTTAGTAGCGTTAAAACATCTAAGGAATCGAAAGTAACCACAGGCAGAAGTACTGCCAAAATAGCAAAACTCGAGAACTGCGATCAAAACATTAACAGCGATAAAGGGAAGTCAAAtctaaatgtttttgatttctcGTCAGATGACGAGCAACCTTTGGCAAAGTCGATTAAGTTAAAGAAAGGAAAAGGGTCTCCCAAAAGGGCTGCCGCTCCACGTGCAAATAAAACAACGCGCAAATTATCTCCTAAAAAAGCATCGGAAACAAAAGATGAAATAAAGAGCAAGCCCAATGAAAAGTTAGAGGAGACAATTaacaaaattgataaaaatatagAGCCTCACAAAGatgcaaaagaagaaaatcaagaagaacttgatagaagtaaaaattcaagtaaacgtagtaaaaatttaaaaaagaaagcagaCGGTGAAATTgtggaagaaaacaaagaattagGACCACCATCTCCAAAGAAAGCAGCAGTTGTACGACAGTCTCGTAAAAAGGCGAAGACAGCGGAAGTTCAAGTGAAATCGGTCAATGGAGAAGATGGAACTGAAGCCCCTGTAAGAAGTCAACGCCCCACCCGAAAGACAAAAGAAGCTGCAGCCATCTACATGGGCATTATTGGACACAAACTTCAATTACCGGACGACGAAGATGACAATTTGTCATTGAATAGTTTTCCTGACCTACCTAATGTaaaggaaatggaaaaaatggagaatgaaataaagaaaaatgcagtAGCATCGGGAAAAAGCGCATGCAACATAGCATCTTCTTCGCCAACAGCCGCAACTAAGATTTCGCCGAAACTAGCAACGACATCGACTTTAGATTCTCCGTCGCTCACTGAAAAACCAATAAGCGCACGTCGTGGACGTCcgccaaaacaaacaaaacaacaacagccaccAGTAAAACGTGAAATTGAAGGGATGTTAGTAAAGAAAGGCGCCATTACTAAAATGTCCATGGCAGTCGAAGCCAACAGTGCTCAAAACAAGAATAAGTCCGAACCCAGCAAGGCTGATTCAGATGATGAAGACTTTTTGCTAAACGAAGAAGTTAATGAAACTAAGCGAAAACTTGAGAAAAGTTTCAGCGACTCAGATGATGAACCCTTAGCCATTAAGGCCAATGTTAAAAGTAGCGATAAAGATGTCGAGCGTGATGAAATTTCAGCAAAGTCTGCTATTGCTGCACCGAGCACAACAATCCCAACAACTGCACCAGCAACAACTTTAGCAATGTTACCACTCACTGCTAAACCAGTTCCTACACCATCTCTAACTGCACCTCAAACTACAAATGTATCAGCAGCAATTGCAATTCCACCACAACAATATCAGCAACAAACCACAACACCAACACCACCGACTCCATTCAAAGCAATTGAAAAGAAATCACCTGTCCctacttcaaaaattttgaacgttCCAGCTACTTATGCTATACCAATGTCAAATTCATCAATACCCCCTCCACCAAATGTTTCAATGAAcgcaaatttcaataaaacggCAGCATACCTACCACAACCATCACCGCTCTATCACAGTGCATCACATATTCTAAGACAGTCGCCAGCACATCAATTCCCAACAGCAAAATCGCCAACAGGACCGCCTGCAGTGTCTACAATTCCTGCGACACATCTCACTGCCCCACCACCTCCGCCCCCACAATCTCCACTCAAATACCaaacagcaccaacaacatATCCACCACCTATTGAAGCCTATCCTTCACCAAAAATAAATCCGAATTTTCTAACACCAAAATTTGATCGAACAACATTGCCGCGTCCTAACAATTTTCCTTCACCCTCTCCAGTAAAGTTTGATgtatcatcaacaacaacaacgacatctAAAGCAGCGGGAATTGCAACTAATATTGGAATGGGCTTAAAAACCACAGGAAATGCTACTGTTACTACTGTTGGCGGAAGTGGAAATGGGACTGCAGCACAACCAGGCATTGCTTCCACATCTACGGCTACTTGCGCAAATGCCGCGGCCAACACCACTACCCCTTCCTCTGACCCATTGAAAGACGAAATCGGAAGTATTTTAGCTGCAAATCTAATGCCGAGTAAAGAGGAATctggaaaaatatttggaattgcTAGTGTTAGTCTTGCACAAAGTTCGGGTCCTGACAATACGAAGTGCACTCTAGGAAAATGCGGGTCAATTCATAAGCCTGTGTTGGGCCCAGTTGTGCCCACAGAAGGGTACATTGGCGATCAACTATCGAGCAAAGAGCGACGAAAGGCAAAAGTCAATATGACGCATGAGCAAATTCAAAAGTGGCTAATTGAATGTTCTTCTAATCCCGATGAGATACAGGATGATTTGGACGACGATTTCGACGATAATTTGCGTccaaatttatttgtaacaaCTCCACCACCAACGCGTGATGACAAGGAGAGTACATCATTCAGTTCATCCTCGAAAGCTACGCGGGATTTAGGAAAAAGTGAAAGTGCATGGTCTGCCAAAGGACCGTCACTGAAGGCTACACCCGTAGTTGCTACAACAAATAGAAAAGATGATAGCAGCAGACTATTAGATGCAATCAATCAGCTGGATATACCCTCGGATAATGAGAAAACCAATGCTCAAGCTATTAATCTCACACACAAAACGGGCATAAAACAGAACCCAAATTCTACCAGTGATGTAAAAGCACCCACCAAAATTGAGAAAGCAGAGAAGAAGTCAGAAAAGAAGCCTCGAGAGGAAAGAACAAAAGCGGAAAAAGAATCCACCAACAAAGATAGTAATAAAGCAAGTAAAATCGATAAGGAGAAAGATATTGCGATTTCTAATGACACAAAGCTAGCTGTTGCTGGTAAACAGCCCAGCATTGTATCGAATCAGAATCAAACACGTATAGAGACTCCAACAACATCAAAACCAAATCGGAGGAAAAATGTCACTGGCGCTTCGACAGTAACATCGTCAGCGACGGTTGAAAAAGCTACAGCGTCAAAAGCAACAGTAAGTGCTGGTTTGAGTGTTGAGGCAACAGTTGCGACAGCTATTGCATCGAAACAAACTAAACGTACGCCTGTTTACAATCAGAAGGCCCAAATGGCTCAAAAACAAGTTGAGCTTAAAGTAACCACGACGACGAGTCATAAGAAGACCGCGCCATTCTCGTATATAGCTTTTTCAGCAGACAATGAAAAATCGATATACTCCTTTGATAAAGACGATGATGAGGCCGATGGATCAAAGGCTATTTCTAAACCTCCATTTCGACGGCAGAGTCGTCGGGACTCTCATCTCGACGAAGTGGTCAATACCACAACCATAAGTACGAGAGCATCGCCAACGAAAAAACgtgccgctgctgctgccgcaGAGAAGGCGAATAAAGATATTGCGAATGCATCACAAAGCAGTTCCGTTTCACTTACGTTGAGCCCATCGGAAAACTGTAAGCATGTAAAAGTTAGTTTGGACGCTGAAAAAGCGGTTGCCACTGCAACCCCCACAGCCACGACTAAAACCACTGCTGGAAAAGCTTCAAAATCAACTCAGAAATCTGAGATTATTGCAacagctactgctgctgctgtaaatGCAGACGTTGACTCCGACTCTGATGGGCACACATTCTACATTCCACTTCAGGGTAGCGGTACGGGAGGTGATGGTGAAGGAGGTATACAGGGTGTTGCTGTTAAATTAGGGCGAGAAGGACCTGATGGACCCAATCAAAAAGTTATTATGCACGCTACTCTAGTAACAAAAGCCCAAATGGGTTCAAACTCAAAACCACTTCCAGATTCTATGAATGTCTCGGATATTGTAAAAACCCTGATGACGTCTTCAAACGTTGCCACCGTTGCAAGCACAGCATCTACCGCTGAATGTACTGCGAAGAAAAATAGCGGCCCCAACGCAAATGTTATGCCGAgcacatcagcagcagcagctgctgcggCCGCAGCTGCGGCATCAGCAAACTCCGCTTCGAATAGCCTTAAGAGTGTACCTATTGGAACTGTGCAGCCACGCTTTAAAGCTTCAGATCCAGCGGCAACGAATCAAGCTGTAACATCAAATACAACACCAGCAGGAGGTACCGGCGCTGTGACTGGTAGTGGATTGGTGAGAGTGAATTCTAATTCGTCACTCTTCTCGGGCTCGGCAAAATCTCGAATTTGCGGAGTTCCGGGGCCTGCAGTGCACGCatctaacaaaaaatttaaagatgacACGCCCATTAAAATGTCCAACAATACTGCCTTTCCACGGCATGACGATCCCACGCAAATGGTTGAAGCGCCAATTTTCCGACCGACTGAGAAGGAATTCGCTGACCCCATCGATTTTATTGAACGCATCACACCCATTGCTGCACGCTTCGGCATATGCAAGATTATTCCCCCGGCAACCTTCAAGCCGGAGTGTCGCATCTCTGATGAAATGCGTTTCACAGCCTACAATCAATACGTGCATAAAATGTTGCATCGCTGGGGTCCAAGCGCCAAAGAGTTtagtgcaataaaaaaatatttggctaCCCAAACCATTGTTATGAATCATCCGCCATGGATTGGCGGCATGGAAGTCGATCTGCCACGTTTGTATCACACTGTACAGGAGCTAGGCGGCTTAAAGgaagtaattgaaaagaaaaagtggaCGCGAGTAGCCGAAGAAATGTGCATTCCAAAATTAGCCCAAGATCGCGTCACCAAACTGGATgacatttattgtaaatatttgctaCCCTACGATACATTATCGCCTGCTGAACGCCAAAAGCTATTCGACGAAGTGGAAGCAGATTGGGCCAAGCGTGAGGCACGCGCCCGACGTAATGCCGATCGATTCGTTAATACGGAAAGTGTTTCAAACGAAGAGGACGATGTTTCCTCTGAAGACGATGAAGAATCTGAAGAGGAGGTCGATGGTGTATCAATGGAGTGCATTGTAAAAGGGCGAAGTATGCCACTCAGTCAATTCTATCGTATAGCGCGAAACACAATGGCGTTGTGGTTTAAAAACACCGAGCCAATTGTGAACGAAGTTGAGGCTGAATTTTGGCGTCATGTAGCTGTGCGTGACAGTCATGTCTGCGTGCATTCTGGCTCGATTGACTCATCCGGCTGGGGTTATGGATTCCCCACTCCAGGGCCAAAAGGCAAAAGCTCTAATTATTCGCGTCATCCGTGGAACCTTAAGGTTCTCACTAACAATCCTGGCTCAGTACTACGGTCCCTTGGACCTGTGATGGGTGTCACTGTGCCCACGCTGCATGTGGGAATGTTATTTTCCGCCTGCTGTTGGTATCGCGATCCTCATGGGCTCTCGTGGATCGAGTATTTGCATACAGGAGCATCGAAGTTGTGGTATGGCATACCAGACGACCAAAGTGCAAACTTCAGAGCAGCGCTCACATCGCTCATTCCTACACattgtcaaaataaaacaatatggTTGCCTTGCGACACTGTAATGGTACCACCTCACATGCTCACCGATCGCGGTGTTTCATTGTGTCGTATAGAGCAAAAACCTGGAGAATTTATTGTAGTGTTTCCACGCGCCTACACCTCCAGTTTAGCTACCGGATATGTGGTATCTGAAAGTGTCTACTTTGCTACAACATCGTGGTTAGAATTGGCAAAGGATGATTTTAGGGACATTCATGATAGCTGTGAACCAGCTATGTTCTCACTCGAGCAATTGCTTTTCGCTTTGGGATATGATCAGCGTGTTACATCCGATACGTTGCAGCAAATGCTACCAATGCTATATGAAGTTTGTGAAAAAGAAACAGCCGCCAGAGAGCAACTAAAGGCTGCTGGAGTCACTTCCTCTGAGAAAGTGCATGTTGAAAAAGGCTCCAAAGcgaaaaaacaacagcagccgCCATTCAAATCTATCGAAAGCGAATGTGATTTATGTCGTGCAAACCTCTACATCTCAATGGTGAAGACAGAAGAGGGCAATATCTACTGCCTGCAACATGCATTGAAAAATCTCAACAACGGGAACATACAAGCAAAACAATGCAAACTAATATATGCCTATAATCTGGAAGATATCGAGAACCTCATAAAAAATCTCAAAGATAAGATACAAATAAAACGCAATGCAATTGCGAATAAGAAAGTGAAGTAA
Protein Sequence
MVVSKDSKRKRKESPQTQSAVESSPEMPKRTKVQAQRKFAQGQSAPASSSYNSVIAASSSSNTGPSTSSESREPPTEILPNKRPKTEDFLTFLCFRGTPALPAHCDFLNQGNPKDTEIPPVKKSAPKPAKAAKKSKKGRTKAVAKNEEPTASTSTAQSTAPPASNNDKNETITTKVVQIEENNVTEVTAPATSATSAPSLVPSTEDAVIPFAVRKRAEVTTDGNRRSRATERQLRNAEKCNNSPEIKRRSNRTGIKDLKPITTDLETDDDDEEYFSANDEAAKMEESGKEQRNEAKKSKTPILPERKSETPSKESETGKTRKGRPASTTKKATKDILKENSVDENTLKDCPKVLQKPEQLASVKEKAPVKRPRQKESPIFIPSPEPSGRMTRQRAFFEPVKVPHRNEETEIDKTAKPPAKIEVIKTEIVSKTENVDVSSVKTSKESKVTTGRSTAKIAKLENCDQNINSDKGKSNLNVFDFSSDDEQPLAKSIKLKKGKGSPKRAAAPRANKTTRKLSPKKASETKDEIKSKPNEKLEETINKIDKNIEPHKDAKEENQEELDRSKNSSKRSKNLKKKADGEIVEENKELGPPSPKKAAVVRQSRKKAKTAEVQVKSVNGEDGTEAPVRSQRPTRKTKEAAAIYMGIIGHKLQLPDDEDDNLSLNSFPDLPNVKEMEKMENEIKKNAVASGKSACNIASSSPTAATKISPKLATTSTLDSPSLTEKPISARRGRPPKQTKQQQPPVKREIEGMLVKKGAITKMSMAVEANSAQNKNKSEPSKADSDDEDFLLNEEVNETKRKLEKSFSDSDDEPLAIKANVKSSDKDVERDEISAKSAIAAPSTTIPTTAPATTLAMLPLTAKPVPTPSLTAPQTTNVSAAIAIPPQQYQQQTTTPTPPTPFKAIEKKSPVPTSKILNVPATYAIPMSNSSIPPPPNVSMNANFNKTAAYLPQPSPLYHSASHILRQSPAHQFPTAKSPTGPPAVSTIPATHLTAPPPPPPQSPLKYQTAPTTYPPPIEAYPSPKINPNFLTPKFDRTTLPRPNNFPSPSPVKFDVSSTTTTTSKAAGIATNIGMGLKTTGNATVTTVGGSGNGTAAQPGIASTSTATCANAAANTTTPSSDPLKDEIGSILAANLMPSKEESGKIFGIASVSLAQSSGPDNTKCTLGKCGSIHKPVLGPVVPTEGYIGDQLSSKERRKAKVNMTHEQIQKWLIECSSNPDEIQDDLDDDFDDNLRPNLFVTTPPPTRDDKESTSFSSSSKATRDLGKSESAWSAKGPSLKATPVVATTNRKDDSSRLLDAINQLDIPSDNEKTNAQAINLTHKTGIKQNPNSTSDVKAPTKIEKAEKKSEKKPREERTKAEKESTNKDSNKASKIDKEKDIAISNDTKLAVAGKQPSIVSNQNQTRIETPTTSKPNRRKNVTGASTVTSSATVEKATASKATVSAGLSVEATVATAIASKQTKRTPVYNQKAQMAQKQVELKVTTTTSHKKTAPFSYIAFSADNEKSIYSFDKDDDEADGSKAISKPPFRRQSRRDSHLDEVVNTTTISTRASPTKKRAAAAAAEKANKDIANASQSSSVSLTLSPSENCKHVKVSLDAEKAVATATPTATTKTTAGKASKSTQKSEIIATATAAAVNADVDSDSDGHTFYIPLQGSGTGGDGEGGIQGVAVKLGREGPDGPNQKVIMHATLVTKAQMGSNSKPLPDSMNVSDIVKTLMTSSNVATVASTASTAECTAKKNSGPNANVMPSTSAAAAAAAAAAASANSASNSLKSVPIGTVQPRFKASDPAATNQAVTSNTTPAGGTGAVTGSGLVRVNSNSSLFSGSAKSRICGVPGPAVHASNKKFKDDTPIKMSNNTAFPRHDDPTQMVEAPIFRPTEKEFADPIDFIERITPIAARFGICKIIPPATFKPECRISDEMRFTAYNQYVHKMLHRWGPSAKEFSAIKKYLATQTIVMNHPPWIGGMEVDLPRLYHTVQELGGLKEVIEKKKWTRVAEEMCIPKLAQDRVTKLDDIYCKYLLPYDTLSPAERQKLFDEVEADWAKREARARRNADRFVNTESVSNEEDDVSSEDDEESEEEVDGVSMECIVKGRSMPLSQFYRIARNTMALWFKNTEPIVNEVEAEFWRHVAVRDSHVCVHSGSIDSSGWGYGFPTPGPKGKSSNYSRHPWNLKVLTNNPGSVLRSLGPVMGVTVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKLWYGIPDDQSANFRAALTSLIPTHCQNKTIWLPCDTVMVPPHMLTDRGVSLCRIEQKPGEFIVVFPRAYTSSLATGYVVSESVYFATTSWLELAKDDFRDIHDSCEPAMFSLEQLLFALGYDQRVTSDTLQQMLPMLYEVCEKETAAREQLKAAGVTSSEKVHVEKGSKAKKQQQPPFKSIESECDLCRANLYISMVKTEEGNIYCLQHALKNLNNGNIQAKQCKLIYAYNLEDIENLIKNLKDKIQIKRNAIANKKVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01132708;
90% Identity
-
80% Identity
-