Ttub033429.1
Basic Information
- Insect
- Torymus tubicola
- Gene Symbol
- -
- Assembly
- GCA_035583055.1
- Location
- JAWWEQ010027082.1:103890-111507[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.031 6.4 8.9 4.5 1 23 32 55 32 55 0.96 2 19 4.4 9.2e+02 2.1 0.6 2 12 59 69 58 78 0.85 3 19 6.6 1.4e+03 1.6 4.3 1 23 85 108 85 108 0.91 4 19 0.0022 0.45 12.5 2.1 2 21 123 142 123 143 0.95 5 19 0.0045 0.95 11.5 0.7 1 23 154 177 154 177 0.96 6 19 0.33 69 5.7 0.3 2 19 188 205 188 205 0.97 7 19 1.6 3.4e+02 3.5 0.2 1 12 431 442 431 449 0.89 8 19 0.0031 0.66 12.0 1.4 2 22 507 527 506 527 0.95 9 19 0.13 28 6.9 0.6 1 23 536 559 536 559 0.93 10 19 0.0082 1.7 10.7 3.1 1 20 568 587 568 589 0.93 11 19 0.0029 0.61 12.1 1.5 3 23 598 619 596 619 0.96 12 19 2.2 4.7e+02 3.0 0.1 1 12 723 734 723 744 0.76 13 19 2.2 4.5e+02 3.1 5.4 1 23 752 775 752 775 0.95 14 19 0.0064 1.3 11.1 1.3 3 22 786 805 785 805 0.95 15 19 8.3e-06 0.0017 20.1 2.1 1 23 813 836 813 836 0.97 16 19 0.04 8.4 8.6 0.6 1 22 846 867 846 867 0.93 17 19 0.0049 1 11.4 7.7 2 23 875 897 874 897 0.97 18 19 0.013 2.7 10.1 3.5 1 21 948 968 948 969 0.95 19 19 2.9e-05 0.0061 18.4 2.6 1 23 977 1000 977 1000 0.98
Sequence Information
- Coding Sequence
- ATGCTCTTCAGCTGCAAGGCCTGTGACAATAACTTCCAGACCATCGAGGAGTGCGTCAAGCATCAAGAGGATGGCTGTCATCTGCTAGCTAAATTCAATTGCCACGAATGCAAGTACTTCACCAATAGCTCAACTGAGTACAATCGCCACGAGCGTCTCACCCATACCTTTACAAAATGCGAGCGCTGCAATCAGGAATTTAAGCGCGGTTTCATATACAAGCATCGCCAGATGTGCGGCAAACCACCGAAATTTCAGTGCCCCCATTGTAGCTATGCTCATCATTTTAACTACGTATTGCGCGAACACATAGAACGCGTGCACACTAAAGTTGTTTGTCCCCGCTATAAAGTGATGGAGCAACGACGATGCCCCGAGTGCAAAAAAGTTTGCCGTTCAATGACAGCGTTGAACAGGCATCGTAAGAATGGATGCCGAGTGCCAATAGCAATTCATCGCTTCAGTTGTCATGTTTGTACGTATGCCTCGTTCACGTGGGCGAGTCTCGTCACCCACATCAAGGAGATGCACGCGCACGCTTATCCCACTGGTGTATACCCGCGATGTGAGAGATGCTACAAGACGCTGATGACACCTCAGGAGTTGCAAAAACATGATAAAATAGAATGTCAACGACCGATACATGCCCCCTCGTGTGCTCACTGTGatAACAATCTCACCGTATCAAGCAAAAATCAAAAGAAGAAAACGTATGTTAAAATAACAGATGACAAGGATCCGCTTAATGTTACGGAATCTAAACAAAGTGATCAACTGGATGCTGTTACAGAAGagAGGGATCCACTTACCTTCGACGAAACGAGTAAAAATACCGTATCAGATTCACTATCTATCGACAAAGATCCCCTGGATTTTGACGAAGATTCCATACATCAGTCAATtgttaaagaagaaattcagATTGCCGGTGATTTCGACTACCTAGTATTGACGGATTGTTCAAGTATGGATACGTTTTCAACAAATGAAATTTTCCCAACGAGAAGCGCTAGTGAGCCTCCTGAAAATGTtccagagaaaaaaaagaaaaagaatcccAGTATGAGCAAGAGTAAACGTAAGAAAAAGAGTGTGGATCCCAGTACGAGTAAAGTAAttgcaacgaaaattaaaagtttaattcaGGAAAAGACTAAGAGGAAACATAAGAATGTATcagTACTGGCTCAACAGACGGACCTGTTCTGCAGGAATTGCGGCGTTCTGGGACACGAGTACTCCAGAGTGCATGGATGCTACAAGTGCGTGACGTGCCAGAGCGATATCTTCTACCGCTGCAAGGTCTGCAATAACGAATTTAATCGCGGTGGCGCCATCTATCACGTAAACATTATGTGCATACCTAAGATACGCGAGATGGTATGCGATATCCCCAACTGTCGTTTTCGCGCCAGTACAAAAGCCATAATGATCCAACATCAAAGATCCGAGCACAGTCTCACAGCGATACCTGGCAAGAAGTTATTGTCGGGTCAGAAAGGTTTATTATCTTACGTAAGCTGTCACAGCTGTAATAAGCTATTCAAACGGCCGAATTTCCTAGCGAAACATCTGAAGACTTGCGGCAAAAGTGGCCGTGAGGTATTCAGATGCTCGCAGTGCCCGTATAAATCGCGTAGACGCGACCTGATCGTTGATCACGAGAGTAAAGTGCACAAGGAGATCGACCTCAGTGAGTATCACAAGTGTCCGAATTGCGAAAAGCGTTACAAATACGAAAAACACATGAAAGTTCATTACGagagttgtaaaaataaagagttGAGCAATTGCGATCACTGCGATTACAACACATTCGTCAAGGCATACTTGGTGAGACACATGCGAGTCAGACATCCTGATCTGTACCCCGATGACGACAAATTCACTTGTAGACTGTGCGAAGAGAAAGCTGTTTCTCATGCAGTATTTATTAAGGAGGAATATGATGAGGACCTTGAAGAATCTTTTCCTATTATTGAGGAAAACTTTATTGACGTTCCAGAGATTAAAATTGAAGATGAAAGTACCGAAGATCCACTGAGCAAAGATAATTTAgTATACAACGGCTACGTGAACCTTTACTGCGCCACGTGCAAGGAGCGCGCACCCCCGACAATACGTAAGCGCGTGAGTACATGTCCACGTTGCTGCCGCCTCTACCACTACCAATGTCCTACATGCGCCCGTGTCTATGCCAAAGGTATCTCGGCGTACAAGCACGCGCGCAACATCTGCGGTAAATTACCGCGTCATCGCTGTCCTCACTGTCCCTTTGCCAGTTACAATTCTACAACTACTGCGACTCATATTAAACACCGTCATACCCGCATCGATCCACGTGACTACGCGGCTTGTCCAAGCTGCGGTAAACGTTACAAACACGAGAATAAGATGCGTACTCATCTGAAGACTTGTGGCCAAGGTCGGATAAAGTTCACATGCTCCTATTGCGAGCTCTCGTTTGCTAATACTTACAATCTGAAGAAGCACCAATTGATGAAGCATCAGGAAACTATGGATCAACAATCCATTCACATATGTCCCAACTGTTCCAAGGTATATCTGTACAGAACGAGTCTCGAGACGCATATTAAGAAGGGCTGCGGTCAAAAGGTCGTGCGATGCTTCCACTGCAAGCTGCACACCACGAACAAGAGAAATTTGACGAAACACATGAAGAGAATGCACCGGGAATTGTACGAGAGCCAAGAGGATAGAAATCCAAGTTTCCTCTCGTGGCGGTCAAAGATCATTCCTGAACGCCTAacacagcaacaacagcaacagcagcagttaCACCAGCAGCAACAGGGCAGTGAACTGACAGGTCATCAGCGGTTTCCTTGCACCGACTGCAGCAGTGTCTTCAGCCGTAAATGCAACCTCTACTATCACCGGAAATACGAATGTGGCCAACCACCGCGATTTCAATGTCCCTATTGCCAGTACCGCACGCGACATCAGTCAAATGTGCGCGCCCATGTGCGTCGCATTCACGCAGGCAAGGATGTTTTTTTCATTGACGTTGGCCGTCCGCCGTTCGACATTGTCTGA
- Protein Sequence
- MLFSCKACDNNFQTIEECVKHQEDGCHLLAKFNCHECKYFTNSSTEYNRHERLTHTFTKCERCNQEFKRGFIYKHRQMCGKPPKFQCPHCSYAHHFNYVLREHIERVHTKVVCPRYKVMEQRRCPECKKVCRSMTALNRHRKNGCRVPIAIHRFSCHVCTYASFTWASLVTHIKEMHAHAYPTGVYPRCERCYKTLMTPQELQKHDKIECQRPIHAPSCAHCDNNLTVSSKNQKKKTYVKITDDKDPLNVTESKQSDQLDAVTEERDPLTFDETSKNTVSDSLSIDKDPLDFDEDSIHQSIVKEEIQIAGDFDYLVLTDCSSMDTFSTNEIFPTRSASEPPENVPEKKKKKNPSMSKSKRKKKSVDPSTSKVIATKIKSLIQEKTKRKHKNVSVLAQQTDLFCRNCGVLGHEYSRVHGCYKCVTCQSDIFYRCKVCNNEFNRGGAIYHVNIMCIPKIREMVCDIPNCRFRASTKAIMIQHQRSEHSLTAIPGKKLLSGQKGLLSYVSCHSCNKLFKRPNFLAKHLKTCGKSGREVFRCSQCPYKSRRRDLIVDHESKVHKEIDLSEYHKCPNCEKRYKYEKHMKVHYESCKNKELSNCDHCDYNTFVKAYLVRHMRVRHPDLYPDDDKFTCRLCEEKAVSHAVFIKEEYDEDLEESFPIIEENFIDVPEIKIEDESTEDPLSKDNLVYNGYVNLYCATCKERAPPTIRKRVSTCPRCCRLYHYQCPTCARVYAKGISAYKHARNICGKLPRHRCPHCPFASYNSTTTATHIKHRHTRIDPRDYAACPSCGKRYKHENKMRTHLKTCGQGRIKFTCSYCELSFANTYNLKKHQLMKHQETMDQQSIHICPNCSKVYLYRTSLETHIKKGCGQKVVRCFHCKLHTTNKRNLTKHMKRMHRELYESQEDRNPSFLSWRSKIIPERLTQQQQQQQQLHQQQQGSELTGHQRFPCTDCSSVFSRKCNLYYHRKYECGQPPRFQCPYCQYRTRHQSNVRAHVRRIHAGKDVFFIDVGRPPFDIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -