Basic Information

Insect: Torymus tubicola
Gene Symbol: -
Assembly: GCA_035583055.1
Location: JAWWEQ010000001.1:6687453-6690348[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 8.5e-06 0.0018 20.1 1.5 1 23 49 71 49 71 0.97

2 15 0.00038 0.079 14.9 4.1 1 23 91 114 91 114 0.96

3 15 0.3 63 5.8 1.6 2 23 121 143 120 143 0.91

4 15 0.0095 2 10.5 0.2 1 19 151 169 151 171 0.96

5 15 0.3 64 5.8 0.2 2 23 280 301 279 301 0.95

6 15 2.5 5.2e+02 2.9 0.0 6 21 309 324 307 325 0.89

7 15 0.47 98 5.2 4.9 1 23 397 420 397 420 0.96

8 15 0.084 18 7.5 0.9 1 23 426 449 426 449 0.94

9 15 0.04 8.4 8.6 0.8 1 23 462 484 462 484 0.96

10 15 0.00079 0.17 13.9 0.4 3 23 530 551 529 551 0.97

11 15 8.9 1.9e+03 1.2 0.5 1 23 585 608 585 608 0.85

12 15 0.0069 1.4 11.0 2.5 2 23 615 638 614 638 0.95

13 15 3.9 8.2e+02 2.3 0.2 2 9 647 654 646 669 0.68

14 15 0.022 4.6 9.4 0.4 2 23 676 698 675 698 0.94

15 15 0.013 2.7 10.1 3.1 1 23 706 728 706 728 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	8.5e-06	0.0018	20.1	1.5	1	23	49	71	49	71	0.97
2	15	0.00038	0.079	14.9	4.1	1	23	91	114	91	114	0.96
3	15	0.3	63	5.8	1.6	2	23	121	143	120	143	0.91
4	15	0.0095	2	10.5	0.2	1	19	151	169	151	171	0.96
5	15	0.3	64	5.8	0.2	2	23	280	301	279	301	0.95
6	15	2.5	5.2e+02	2.9	0.0	6	21	309	324	307	325	0.89
7	15	0.47	98	5.2	4.9	1	23	397	420	397	420	0.96
8	15	0.084	18	7.5	0.9	1	23	426	449	426	449	0.94
9	15	0.04	8.4	8.6	0.8	1	23	462	484	462	484	0.96
10	15	0.00079	0.17	13.9	0.4	3	23	530	551	529	551	0.97
11	15	8.9	1.9e+03	1.2	0.5	1	23	585	608	585	608	0.85
12	15	0.0069	1.4	11.0	2.5	2	23	615	638	614	638	0.95
13	15	3.9	8.2e+02	2.3	0.2	2	9	647	654	646	669	0.68
14	15	0.022	4.6	9.4	0.4	2	23	676	698	675	698	0.94
15	15	0.013	2.7	10.1	3.1	1	23	706	728	706	728	0.97

Sequence Information

Coding Sequence: ATGGACCCGGAGATAAATCCAAGCGACTTCCTCGAGATGGGCGTCGTAGTCTCAGAAGAAGGCGCCCACGCGTTACCTCAACCTTTGCCACAGCAACAGCAAGACCCTGGAGTGTTCCAGCATTACAACAAGCAACACGAGTTATACGTCTGTTCACTCTGTAACAAAGCCTTCAGCTCGAAAGGCCATTTATTGGCGCACGCACATGTACACGATGGAGTCGTGATCGGTAAAAAAGTGATAACGGACGATCCCACGTCTTATAAAACTCATCAATGCGATCTATGCAACAAATCGTACGCGAGCCATAAGCATCTATGGGCACATGTATCTAAAATACACAAGGGCGATCCTGCACTAACGTGTGGTTACTGTTCACGCATCTATTCGGCACGTATGAGACTTGAGAAGCACTTACACTTTTCGCACCAGGTCATACCACCATCGTGTTTCCAATGTAAAACTTGTCCTAATATGTACACAAATGACACAGATCTCAACAAACACGCGATAGCGTGTCTTGGCATGCAACAGCGTAAAGAGCAGCAGTTAGCCAACAACAGTTTTAATGCCCCGCAATTCGtgAAACTTAAAAACGCTCTGGAACCAGGTATCTCGGATACGTCTAGCGTAAATTcggattatgaaaataatgattataagAGGGCTGAAGCGAGACTTGCTAAAACCCCTGAGTTGATTATTCAGAAGTACTCTCTGATAAAGGTTAATAGTGCGCAGAAAGGATACGAAGAGCTACAGAATATGTTCTGCAAACAGAAGGAGCAAACCTATGTTGTTCATGAAGAATCgatggaaaatgaaaataaaagatggTATTGCACGGCCTGCACCTTGAATTTCGGCAGCGTTGACGAGTTTAGGCAGCACGAGAAAATTCATGCCGAGAAGCCTTTCGCTTTATGCCAGAAAGATTTCAGTTTGAAGTCGTCCTTGGGTGGGCACATAATTTCGTCGCAAGATATAGACCCTACGCCATTGGTTGAGAGCGACAAGTGTCTGAAAAAGTCCGTACAAGAGAGCAACATACAAGTGTCACTCATTAAGGAGGAACAGAATATTACCAAAGATAATTCCATGTCGCCATTTTCTACTGACAATATGAATAATGATGACGAAGAGGAGCATGTGAGCGGAACAGAAAATCTGCTCAATACGAAGGTAGTTTTCGTTTGCGAACTTTGCACGCGTGACTGTAATGATCGATACTCGCTCTGGTGCCATATGTGTGTTGCCCATAAAGAATACGCAGCCTTTGCTTGCGGACTCTGTCTGAGAATCTGCGAGGACAATACACAGCTACGTAGCCACGTCACTATGTACCACACAGGTCCAAAACTTACTATGTCCGAGCAGAGGAAGTTCAGTTGCAAGATATGCGGTCGACAACACAATATACGCAAGAATCTCATAGCCCACGTTTCTATACACAATATTGATCCTGACGCTGATCCGGCAAGTTTCGTTCAATTGAACACTAACTATTTTGGTGAAAATGTGAATAGCAGCGAAGCTGGTAACGAAGACCTGATTATGAACTGTAATGACGACAGTGAGAAAGTTGATTGTTATATTTGTTACAAATCCTATCCCAGCGAGAAACTTCTGATGATACATCAAAGACGTTCTCATAGAGCCAAACAAATGGTGCCAGTCGGTGAGTTCGGGCCCGATGGTGGACAATCCGGACAGAATGGTACACGTAAAAAGCGATCATATCAGCGGTCGTCCTTCCCTTGTCAGCTATGTGGAAGCTCTCACCCTAGCAAATGGCAACGCTGGCTGCACGTCAATAGAATGCACAATAATGAAGCGTCTATTAAGTGCGAGCATGACGACTGCGCTAAAGTCTTTGCAACGAAAGCTCTGCGTAACAAGCATATGCAGCATCACCAGGTGCAAGGTAAATTGCCCATCACTTGCGAGATCTGCGGTAAACTGTGGGATAATCGTGCTGACCACTGGCAACACGTAAGGAATGTACACATGGACATTTTGCCACTCATTTGTAACGTTTGCCTCAAAGTCTGCCCCGATGCAATGCAGCTCAGTCAACATGTCAAGCTTAAGCATTGGCCACTGATCAATGGTGATTTTAATTGCGATGTATGTGGTAAATCATACGTATGCAAGAATTATATGTTAAGGCACAGGAAGATTCACGGATTGGATGGGGaaccatatatataa
Protein Sequence: MDPEINPSDFLEMGVVVSEEGAHALPQPLPQQQQDPGVFQHYNKQHELYVCSLCNKAFSSKGHLLAHAHVHDGVVIGKKVITDDPTSYKTHQCDLCNKSYASHKHLWAHVSKIHKGDPALTCGYCSRIYSARMRLEKHLHFSHQVIPPSCFQCKTCPNMYTNDTDLNKHAIACLGMQQRKEQQLANNSFNAPQFVKLKNALEPGISDTSSVNSDYENNDYKRAEARLAKTPELIIQKYSLIKVNSAQKGYEELQNMFCKQKEQTYVVHEESMENENKRWYCTACTLNFGSVDEFRQHEKIHAEKPFALCQKDFSLKSSLGGHIISSQDIDPTPLVESDKCLKKSVQESNIQVSLIKEEQNITKDNSMSPFSTDNMNNDDEEEHVSGTENLLNTKVVFVCELCTRDCNDRYSLWCHMCVAHKEYAAFACGLCLRICEDNTQLRSHVTMYHTGPKLTMSEQRKFSCKICGRQHNIRKNLIAHVSIHNIDPDADPASFVQLNTNYFGENVNSSEAGNEDLIMNCNDDSEKVDCYICYKSYPSEKLLMIHQRRSHRAKQMVPVGEFGPDGGQSGQNGTRKKRSYQRSSFPCQLCGSSHPSKWQRWLHVNRMHNNEASIKCEHDDCAKVFATKALRNKHMQHHQVQGKLPITCEICGKLWDNRADHWQHVRNVHMDILPLICNVCLKVCPDAMQLSQHVKLKHWPLINGDFNCDVCGKSYVCKNYMLRHRKIHGLDGEPYI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -