Ttub003113.1
Basic Information
- Insect
- Torymus tubicola
- Gene Symbol
- -
- Assembly
- GCA_035583055.1
- Location
- JAWWEQ010000010.1:17619014-17626066[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.017 3.6 9.7 4.1 1 23 238 260 238 260 0.98 2 12 4.9e-05 0.01 17.7 0.2 3 23 297 317 295 317 0.96 3 12 0.00073 0.15 14.0 4.0 1 23 323 345 323 345 0.99 4 12 0.59 1.2e+02 4.9 3.2 3 13 353 363 351 379 0.81 5 12 5.5e-05 0.012 17.6 1.4 1 23 385 407 385 407 0.96 6 12 0.28 59 5.9 4.1 1 20 539 558 539 561 0.90 7 12 5.9 1.2e+03 1.7 2.2 1 23 567 590 567 590 0.88 8 12 5.4e-05 0.011 17.6 0.5 1 23 596 618 596 618 0.98 9 12 0.0046 0.97 11.5 1.6 1 23 624 646 624 646 0.99 10 12 0.00011 0.024 16.6 1.0 1 23 652 674 652 674 0.98 11 12 0.022 4.6 9.4 0.2 1 23 680 703 680 703 0.97 12 12 0.00028 0.059 15.3 1.2 1 20 707 726 707 728 0.94
Sequence Information
- Coding Sequence
- ATGGAGACCAAGTCAAACGAAAGACAAGTTTGCAGACTTTGTGGCCAAGCAGACGGCATGTACATCGACGTATTTGGCGCTGAGGGTGTAAAACGTCTACTTggatttaaaattcattcaaaaattaatattctgATAGATGAGATGGATCCTCTGCCCAAGGCGATCTGCGTTCAGTGTCTGGGCAAACTTGAATTTGTTTGCGATTTCCAAGAAGAGTGTCTCCGCACCCAACAACTGTTACGCGATCAGTATAATCTACCACCTTTGCCAGACATTGAAGAACAAAAACCTGAAGATTCAAGTTCTATAACAAATACACCTGGTATTGGTGTTTCTGTTAAAGAATCGACTAACCGAAGTAATGATATTGAAGATATAAGTTTTATAGTTGAATTATGCAAGAGACAAGAAACCGATTCATTAACTGTATTAGCCAAAGTTTTTCCAGATCAAGGTTCTTGTTTAGTTGATAAATCCATCATAACATTCCTAGAAGATGAAACTAACGAAGAAGTTAACAATcttgttaataatattgttagtTCAAATGTTTCAAACAATGCAAACTAtagtttaattgataaattgcAAAATGCTGAAGATATTACTAACAGTTCACGAAATCCAGAAGAACTCTTTAAAATGGATGGTGATGAAATACATGTTGATGATAATGttgaacaaattaatattaataatcaagtAAGTTATGTTTGTAAATTATGTCAAAAGACATATGAGCGTAAGGACAAATGCTCTGTCCATGTGAAAACGCATCTTGGCATAAAGCAATATATCTGTATTTTGTGCCAAGCAAAATTTGTCTGCAAATCTGATGTTATGAAACATATTCGATGCTCTCACACAAATCCACGACCTATTGCTTGTCCCAAATGCCCAAAACGATTCAGATCTAAATTTGATTTAGCAGAGCACAATAATGTACACAAAGGAATTAGACCATATCAATGTGCGGATTGTAATCAAAGTTACCACCATAAAGTTTCTTTACAAATGCATGTCAAGTCACACATGCCTCCCCAAAATTTAGCTTGTGAATATTGTGGAAAGGTTTTTCCATATCGTACAAGaTATGCTTCTAAAGCTTTTTTGAATGAACATTTGTTAAAACACCAAGGAGTGCGCAAACATATTTGTCAGAAATGTGGTGCTGCATTTGCACAAGCAAGTCATTTAGCTGCTCACCGGCATGTTCATGAAGAAAAAACTCATGCTTGTCCAGAATGTGTTAATGTAAGCAATGATGAAGAAAACATTATATTGGAAGGAGCTATAATTAAATCTGTAGATGATTCTTCTGTTGTATTTCCGTTAGAACCAAAATTGTACAGTAATCAACTTGAACTCAGCAATGCTATAATAGCTAATGACAGTGACAGAATgcaaattccaaaaataatttgtatgtcAACTGATTGTGAATTACCTAAACCTCAAAAGTCTAAAGAAACAACTTCTTACCAAGTTGAAAATGATAATCTTGTTTCAGAAGATAGAactgaaataattaaacaaattaatgatGAAACTGTAGTAGTACAAAACTCAAAACAAAATGTAAGTTCAAATTCATCTGCAGATAAAAATAAGTATAAGTGCAAGATTTGTGAAATTTGTTATACACGTTTGGATAAATGTCAAgttCATATTTGGCGACATTTGGACATGAAAccatatatgtgtaaaatttgtCCATTTACAACATTAACAATTAGCAATATTCGATGTCATATAAGAAAAAGTCATTTGAAAATTAAGCCATTTGTTTGCCTTATATGCAGTAAACGTTACAATTCATCTACATTACTTGAAGAACACTTGAATACACACACTAATACACGACCTTATCAGTGTAAATTATGTCAATTTGCAAGCACTAGTAAACAAGTATTAGCTCATCACATCTTAACGCATAAAGCAACAAAAgattttgtTTGTGATATGTGTGGAAAAGATTTCTATTCAAAAGGAAGGATGCGTACCCATCAACTTTCTCATAATAAAGATAAAGCATTCAAATGTTCACTATGTTCTGTAtatgtttcaaatataaatgCTCTTGAACGCCACATAAATAATTCTCATGCAAAGAAATACAAGTGTGAAATTTGCAAAAAGGAATACAAATCTAAAAAGGCTCTACATAACCACGAATCAGTCCAAAATTCGAAATTACTGCCGAATTACCCCTCCATGGGCATGCCGAATGTCGTATGCCGTATGAGCTTAGTGTTAGTACTCGTAGACTTCCCCGCTGATTCGTACTTcgctaacccaacccaacccattcCACAATGCATGCCGTATGCCGTATATGTGAGCTTAGTACTCGTAGACTTCCCTGCTGATTGGTTGAACTTTAGCGAACTACCAATCGGCGGGGAAGTTTACGAGTACTAA
- Protein Sequence
- METKSNERQVCRLCGQADGMYIDVFGAEGVKRLLGFKIHSKINILIDEMDPLPKAICVQCLGKLEFVCDFQEECLRTQQLLRDQYNLPPLPDIEEQKPEDSSSITNTPGIGVSVKESTNRSNDIEDISFIVELCKRQETDSLTVLAKVFPDQGSCLVDKSIITFLEDETNEEVNNLVNNIVSSNVSNNANYSLIDKLQNAEDITNSSRNPEELFKMDGDEIHVDDNVEQININNQVSYVCKLCQKTYERKDKCSVHVKTHLGIKQYICILCQAKFVCKSDVMKHIRCSHTNPRPIACPKCPKRFRSKFDLAEHNNVHKGIRPYQCADCNQSYHHKVSLQMHVKSHMPPQNLACEYCGKVFPYRTRYASKAFLNEHLLKHQGVRKHICQKCGAAFAQASHLAAHRHVHEEKTHACPECVNVSNDEENIILEGAIIKSVDDSSVVFPLEPKLYSNQLELSNAIIANDSDRMQIPKIICMSTDCELPKPQKSKETTSYQVENDNLVSEDRTEIIKQINDETVVVQNSKQNVSSNSSADKNKYKCKICEICYTRLDKCQVHIWRHLDMKPYMCKICPFTTLTISNIRCHIRKSHLKIKPFVCLICSKRYNSSTLLEEHLNTHTNTRPYQCKLCQFASTSKQVLAHHILTHKATKDFVCDMCGKDFYSKGRMRTHQLSHNKDKAFKCSLCSVYVSNINALERHINNSHAKKYKCEICKKEYKSKKALHNHESVQNSKLLPNYPSMGMPNVVCRMSLVLVLVDFPADSYFANPTQPIPQCMPYAVYVSLVLVDFPADWLNFSELPIGGEVYEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -