Ttub050301.1
Basic Information
- Insect
- Torymus tubicola
- Gene Symbol
- -
- Assembly
- GCA_035583055.1
- Location
- JAWWEQ010052253.1:5237-8114[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.3 64 5.8 0.5 1 23 120 143 120 143 0.95 2 17 0.64 1.3e+02 4.8 2.6 1 23 175 198 175 198 0.93 3 17 0.091 19 7.4 0.9 2 23 273 295 272 295 0.96 4 17 0.0018 0.38 12.8 0.3 2 23 327 349 326 349 0.96 5 17 0.93 2e+02 4.3 0.3 2 23 416 438 415 438 0.91 6 17 4.8 1e+03 2.0 0.3 1 23 478 501 478 501 0.76 7 17 7.5 1.6e+03 1.4 6.5 1 23 516 539 516 539 0.95 8 17 0.2 43 6.3 0.4 1 23 549 572 549 572 0.96 9 17 2.8 5.8e+02 2.8 0.4 1 13 584 596 584 606 0.75 10 17 0.071 15 7.8 1.3 1 23 619 642 619 642 0.97 11 17 0.018 3.9 9.6 3.0 1 23 655 678 655 678 0.96 12 17 5.6e-06 0.0012 20.7 1.3 1 23 684 707 684 707 0.95 13 17 0.00044 0.092 14.7 1.2 3 23 714 735 712 735 0.93 14 17 0.0012 0.24 13.4 0.4 1 23 740 763 740 763 0.97 15 17 1.9e-05 0.0041 19.0 0.6 2 23 770 791 769 791 0.97 16 17 3.8e-05 0.0081 18.1 0.4 1 23 797 819 797 819 0.98 17 17 9.1e-07 0.00019 23.2 0.8 1 23 825 847 825 847 0.96
Sequence Information
- Coding Sequence
- ATGTTgaaCCTCAAGAAGCGAAAAATCAACACTGCTGTAACATCCACAAGGTCTACCGACAAGACAACCAATGCCACCGAACAACGTCGCTTTGTCATGGAACGTACGCTCATCAAGATACCACCACGATCAATGAAAGTCGTAGGCTCTTCGAGCATGACAATAACGCGCACGATGGCGTCGCAACCAATCGGTGAGTCAATTGAGGTAAAGAACGAGCCTGAGGATGACTTTGAGGAGGTATTCATCGATGGCACCGAGACTGGCGCCAGTAGCGTCAGTTGTAATAGTCCACCGACGAAGAAaaatacgacgacgacgacaacaggAGCGAGTTCCAACGACGAGGTGGTCGTATACATGTGCAAAGcctgcaaaatgtattttccTATGAGACGAATGCTCGAGATTCACAATTCAACGGTACATAATCCAGTGAAGAAAACAACGCCGGCGACAGTGGCTGAAGAGTCGTCACCTGAGAAAGTACAACAAGATTATAGAATGAACAAAAATCGATCATACCAGTGCAATCACTGTACGTTCAGCTCGTCTGCTTTGCAAGCTATGAAGTCACACGTGACGCGTAAGCACTCGAATAAAGCAGCAAGCCGATCAAAGCAGCCTAAAGTAGTTGTATCAGCTGACATCATGCCAAAGCCCGAAGAGCCTGATGAGGACGACGAGTCGTCCTGGCCGATGGAGATAATCGAGGATGAGGCGAGTCTGGTTTGCCGACCGCCCTCGGCTAAAAGAGCCAAAATTGAAGTGGCAGAGGAAGAGGAAGACAAGGAAGAGTCGAATGAAGAGTCGACACGATGTCGCTACTGTCCGTTCCAGGGTTACACACGTATCGAGCTCGAGCAACATATAAAACGCAAACATCGCAGCAAATGGCTTGTCACCATAGCGAACAAAGTCGCCGCTCTGTCTAAGAAGAGCTCGTCTTTCAACAAACCGTCGCAGATCGTCGAAGTGACCTGCCCGCGCTGTCCTTACACAACCGTTTCGCGCTCGTCCATGAAACAACATCTGCTGAGTGAACACAACAGTCGCATTGCTGGAGATCTGGAGGACGACGAGCGAGAGGAAGGCGAAGAATCGGATGAGGACGAAGAGGAGATCGTCGAAGAGGACGTGACGAAAGTCGTCGACGAGACGGATATGTTCGAGGAAGTCGTGGACATGGCCGATGAGGTGGAAATGCCTAGAAAAGCGCCTTCGCCAAAGCAACGCTCGTATCAACAGTGTCCTCAATGTCCTTTCCGCGCGTTCGCCTCCGCCACTCTTAGGATGCATCTCAGTCGTCGACATGCCATAGATCCACTTGCTCTTACCGAGGGTGGTGAAATCGATGCCCAGTCGCTCCGTAAGAAGTTTGCGAGTGGCAGTGGTCACCGCAAACTTGCGAGCACGATGCCGGTGACAGCGTACGCTTGTCATTACTGTACCTTCGCTGCCGCTACGGTGGGTAGTATAAACTCGCACTCGGCGCGGCTACATTCGGGTCAGCATCAGCCGCTTCTCGAAATACCCGTCAATGAGTTCGACTGTGACCAATGCGACATAAAGACGCACAATCGTAAGACTATGCAAAGCCATTCGAAACGTTGCCATCTAGCCCAAGCCAACTCTGACGGCATGTTCGTTTGTACGGTCTGCTCATACGAGACTCTCTCGAGGATGGGTCTACAGAGACACATCTCTATGAAGCATAACAAAGCCAGATGCGATCCCGCTGTTGAGAGCTATATGTGCGAGCATTGCGACTTCTCGTCGCCAAATCTGAAGATCATGGACTGGCATAAACAGCTGCACTCGGAGAATCCAACGCCAGGTAACGACGGTAATTTTTATTCGTGCAACGACTGCGAGTTCTCCACTTGGATTAAGTCGCAGCTCTTCTCGCATATCAAGCGAAGGCATAAGGAAGGCGAGGACGAGGAGCAAGTCGAGCATCTCTTCGTTTGTCAGCAATGCGAGTACACGAGTAAGAACAAGCACTCGATGAAGGTTCACGTGATCAGGAAGCATACGTCCGAGTTTAATCATGAGTGCGAGATATGCGGTAAAAAGTACAAGGTCAAAGCTGATCTCACGAATCATATAAGGTTTCAGCACAGGGAGCAGCCCATCATATGCGATGTGTGTGGCAAGACCTGTAGGAACAGTAATCTGCTTTATTTGCATCAAAAGTTTGCGCATTACAAGCCGGAATTCGAGTGCCCAATATGTCACAGGCGTATGGTCAGCCAAGCGAACCTTGACGAGCATATACTCAAGCAGCACGAGCAACGTCAGGATGTTGTGTGCGACGAGTGCGGTAAGACTTTCAAAAAAGTCGCTCGACTCAAGATCCATAAACGCACGCATACTGGTGTCAAGCCGTATACCTGTAAAATATGCCTGAGGGCATTCGCGCGGAGGAATGGATTGAGGCAGCACCTTTTGATACACACAGGACAGAGACCTTATTTGTGTGACATTTGTGGCAAGAGCTTCACGCAAAAGACCGGCTTGATCAGTCATAGAAAGAGTCATCCGGGTAGTCACCCACCCTTGCCTAGGGTCACCATTGATCATGTACTATCTGATTTATTGAAAGAAGAAGATTAA
- Protein Sequence
- MLNLKKRKINTAVTSTRSTDKTTNATEQRRFVMERTLIKIPPRSMKVVGSSSMTITRTMASQPIGESIEVKNEPEDDFEEVFIDGTETGASSVSCNSPPTKKNTTTTTTGASSNDEVVVYMCKACKMYFPMRRMLEIHNSTVHNPVKKTTPATVAEESSPEKVQQDYRMNKNRSYQCNHCTFSSSALQAMKSHVTRKHSNKAASRSKQPKVVVSADIMPKPEEPDEDDESSWPMEIIEDEASLVCRPPSAKRAKIEVAEEEEDKEESNEESTRCRYCPFQGYTRIELEQHIKRKHRSKWLVTIANKVAALSKKSSSFNKPSQIVEVTCPRCPYTTVSRSSMKQHLLSEHNSRIAGDLEDDEREEGEESDEDEEEIVEEDVTKVVDETDMFEEVVDMADEVEMPRKAPSPKQRSYQQCPQCPFRAFASATLRMHLSRRHAIDPLALTEGGEIDAQSLRKKFASGSGHRKLASTMPVTAYACHYCTFAAATVGSINSHSARLHSGQHQPLLEIPVNEFDCDQCDIKTHNRKTMQSHSKRCHLAQANSDGMFVCTVCSYETLSRMGLQRHISMKHNKARCDPAVESYMCEHCDFSSPNLKIMDWHKQLHSENPTPGNDGNFYSCNDCEFSTWIKSQLFSHIKRRHKEGEDEEQVEHLFVCQQCEYTSKNKHSMKVHVIRKHTSEFNHECEICGKKYKVKADLTNHIRFQHREQPIICDVCGKTCRNSNLLYLHQKFAHYKPEFECPICHRRMVSQANLDEHILKQHEQRQDVVCDECGKTFKKVARLKIHKRTHTGVKPYTCKICLRAFARRNGLRQHLLIHTGQRPYLCDICGKSFTQKTGLISHRKSHPGSHPPLPRVTIDHVLSDLLKEED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -