Ttub002247.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Torymus tubicola
Gene Symbol
hang
Assembly
GCA_035583055.1
Location
JAWWEQ010000010.1:2526332-2531189[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 2.4 5.1e+02 3.0 6.7 2 23 254 276 253 276 0.96
2 20 0.047 9.8 8.3 5.7 1 23 351 373 351 373 0.98
3 20 0.00079 0.17 13.9 0.5 1 23 422 444 422 444 0.97
4 20 0.023 4.9 9.3 0.4 1 20 501 520 501 522 0.93
5 20 0.0033 0.7 11.9 1.0 2 23 563 584 562 584 0.97
6 20 0.0047 0.98 11.5 0.1 1 23 627 649 627 649 0.96
7 20 0.00055 0.12 14.4 0.2 1 23 655 677 655 677 0.98
8 20 2.5e-05 0.0051 18.7 2.4 3 23 720 741 719 741 0.95
9 20 0.00079 0.17 13.9 0.4 2 23 750 772 749 772 0.92
10 20 0.00013 0.027 16.4 1.2 2 19 800 817 799 822 0.89
11 20 0.00015 0.032 16.1 0.8 1 23 847 869 847 869 0.92
12 20 0.039 8.3 8.6 0.1 2 20 938 956 937 956 0.95
13 20 0.0011 0.24 13.4 0.2 2 23 975 996 974 996 0.97
14 20 0.0022 0.46 12.5 4.8 1 23 1025 1047 1025 1047 0.97
15 20 0.26 55 6.0 1.7 6 21 1071 1086 1067 1090 0.83
16 20 0.015 3.1 9.9 0.6 2 23 1146 1168 1145 1168 0.94
17 20 0.015 3.2 9.9 2.9 3 23 1197 1218 1195 1218 0.89
18 20 0.0014 0.28 13.2 1.3 1 23 1225 1249 1225 1249 0.94
19 20 0.0095 2 10.5 2.0 1 23 1254 1277 1254 1277 0.97
20 20 0.0047 0.98 11.5 0.4 2 23 1308 1330 1307 1330 0.95

Sequence Information

Coding Sequence
ATGGACGACGTGGTGGAGGTCAGCGGCGGCCTGGAAAACGCTTGCAGGCTTTGCTTAACGACCGAACAAACGAGGTCCTCGATCTTCGGTGTTCCCCACGTATCTGTGCCCTTCGCCGAGAAGATACGAGCTTGTTTATCGATTCAGGTTACAACCAACGATAAATTGTCAACTCTTGTTTGTGCAACatgtatcaaaaatataaatcactGGCATTCATACAAAGATACATGTTTGAAAGCGCAAGAAAAGCTTCAACAATGGCTAGCAAAACACAACACAACAGTTCAGccCATTCAAGTGACTATAAAAGAGGAACCACTAGACGTAGATTACCCAGATGAGAGTTCAGTACCTGTAACAAATCATGTTAATACTACTAATGATGTTACATCTCATGTGGATAGAATGGAAGTTGATGATGAAAATACGAGTACTGCAATTACTAACACTTTGACCCCAGTTTTACCAGAACACCTTTTACGACTTGATGAATCAATGGATGATGAATTTAATCCAGATATTCATATCAAAAGTGAACCTATAGATACAGAAGATGAAGTAGATATAGAATCGGTTAATAGTGGAGAATTGCTAATTAATCCAATGGCAGTGGCAGTAgctaataatgttaataaagacAGAGTAATGGAAGCTGATTCTACTCAAAAACctgttttcaaaagaaaatttgcaTCAAAGAAAACAATGCGTCGTGGACCTCGTACTCATTATAGGGGGCTTCGacttttcaaaaagaaatgtgatcattgtaaaattaatttacattcaaAGTTTTCATATACTCAACATATGTCTAGATACCATGGCATAGTTAATAATATGTCGACAAAGGATATTATCAAACCTCCTGGTCAACTTCCAGCAAGTACTCAAAAATCAAAACTTTCTCATCAAGTAGATCCTGTAGAGCCTGATATGGGTGAGGACCCAAATAAAAGTAACCCAGAAGATGCAGAATTtgagaaaatgataaaaacagaTCGTTTAACACAAGttcaaaagaatattattgGACAACTGAAAACATTTTCATGCTACACTTGCAAGCAATCATTCTATGATCGAAGACATACTTTGAATCATATTAGGCAACACATGCCTGATCTGCGACCTTACACTTGCATTGCTTGTTTAACTGAATTCTCGGACAGATCAATGTATAAATTACATTGTGGTGCCTCCTTTGAATGTGCAATGAAAATAGCTCTTGTGGTTCCCAAAGTgggtaatgaaaaatattttacttgcaATATGTGCTTGAAACCATTTGACAACCGACAAGATCTTCTTACTCATTTAGCACAACACGCTGAAAAGCAACACAAACAGCAATCTCAACCAGTGGTGAAAAGTCCGGTAAAACTCACACCTCTAACGCAATCTTCGCCGATTCCTAGAGTTGAATCTTCACCTCCCAAACGACCATCTACGAACGCGCCTGCTGGACCTTACATGGGCGGAGATCCAGCCCACAACCACATGTGTGACCTCTGTGGTATGATCTACAGATACAAGCCCAACATGTTTAAGCATCGCGAGCTCTGTATGAGCCTCGCTGAGAATATTCGTACTTCTTACCGTTGTATTCACTGCAACATGACTTATCTCGTTTATAAGAAGTTTTACACGCATGTGTATAACGACCACAAGAAGCGCGACATTACGTGCTATACGTGTTACAAAAAATTCCCTACAGCTGATGATTACCTTGCCCATCATGAAACACATCGCACTTATAGCGACAAAGAGAACACGAACGAAGCTACAAACGAGTCTGAATACGCTCAAGGTAATCAAGCTGTCGATGATCCTCTCAACTCGTCGCAGCATCCTACAGATGTGGCCGAGAAACCCTTCAACTGTGCTCTTTGCGGCGAGGACTTTGCTACAAAACTCGAGCTCAGCGAACATCGTAATCTTCATCTGAAGGTAAAGATCTATTCGTGTGTTATCTGTCGCAGTATGTTCAGTAGTTCAGGCGCCCTTGAGCTACACATGAAGGAACATGGTATCGAGGACCCAAGCGAGCAAAATGCCAACAGCTCATGCGTAGAATACGGTACCGGAAATCAGAGCGGTTTTAATGAATCATCAATGTCGGCCATATCCGATCCGGGAACTAAAGTGAACCACTGTTACGAGTGTGGTAAAAACTTTTCGAATTATGCTAATTTAAAGAGGCACGAACGCAACCTTCACATCCAAAAGTTGAAACGCCGCTGGAGCTGTGACGAATGCAAGCGACGATTCAAATCGCAGTCGGAGTACGATGATCATATAACCTTGATACACGGAACACGCATGAGGAATACACCAAAAGTAGTGTCTCCACCACAACCCCAGTTCTCTCCACTGACGGGCAAACCAGTGATGCAGTGCCCCAAGTGCCCGAAGACCTTCACTTATCAAGGCAATCTAATCCTTCATTGTCAAAATGTCCACAAGGAGAATCCTTTCGATCACGTCCCTCGTCCCGCTGCTTCACCTCGTAAGGTAATAATCACGGCTCAGGGCCACGCTTGTGACATCTGCGGCAAGACCTTCCGCGAGGAGCAGTCTCTTAAAACCCATCGGGGCTGGCATTTACGTACCAATCGTAAGTGGCGATTGTCCAGCGTGAACACCCCCATCAAACCTAGTCTCAATTCCAATCAGAATAACACCGTAATGAGCGGACCGGGATACACAGTTACCGTAGCCCCAACGACTACACCCAAACCAGCTAAAGCTCGCAAATCCTTCCCTAACAATCCTTCGCAAAAGCAGCTCGATGTCATAGCACCTCTGCAGTGTCAAGTCTGCGATGACCGTTTCAGCGACGTCGCAGAACTGAGGAAGCATCTCTGGGACATACATTGCGCGCGCAACAAGCCCGAGAAAACATTCGCAAGTGAGCTGCAGTGCGAGCTCTGTACGAACAAGTTCACCGACGAGGATGCACTGAGTGAACACATGAAATGGCACTCGGAGAATCCGATACTGTCTAGCCACAGTAACGACACCAACAGCAGTAGTGTGGCGAGTAGTCTCGAGCCACCTCGTAAGAACTTTTGCTGTGACGTATGTGGCAAGTACTACAGCAACCGTAAAATGTTCATTCGCCACAAAAAGCTTCACAAGGTTCTTCCTGCGTCGTCTATGATGCATCTGCAGTCACTTCAAACTAAACGACCATCCTGCGCGCCTTGCCAGAAGACTTTCTCCACGGATGCCTCGTTCAGGCGGCATAAAGCTTCACCCTGCCATCATAACGCGGTGCGCGCACAAATGCACACCACGCCTGCTAAGAAGATCACAACGACAGCAATTGTGCATCACCCACCTGATACCATGCGGTTGCAAAATGTCAAGAAAGAACCTGGCAGTGATACCCCCAGTCCGATTACAGTAGGCACGAAAAAGCGCCCTGTCACCTGTCACATCTGTAAGATGGTCTTCCCAAATATGAGCGTGCTGTACCAGCACAAGCAGCTCGTCCATAAAGTGCCTCAATTCAAGAACAAGGCCGGCGTCGGTCAGCAAACTGAGTGCGTGCCACTGATGAGCGCCGAGGGCCTCGTGTGTTGTAACCTTTGTGGCAAGCAATTCCCTGGCATCTCTAATCTCAAGCAACACTTTGCGCACAAGCACAGGGTCAAGAGCACGATGCATCCCTGCACGGCGCCCGGTTGCAAGCTTGTCTTCACGAGCTCGCACTCGCTGAAGAGCCACGAGGCTACGCACTCCAGTCTAATCTACTTCTGCAATCTGTGCGACAGGCACGTATTCTCGAGGCCAGCGATGACGAAACACATGATGACGATGCACAAAGCTGTCTACCAGTCGGGAGCGAATAAGACTAGTCTCTGGTCCGAGACTGATCTGACGTATTACAAACCGAAGGAGTTGGTAAACACGGTGTGCCCCAAATGCAAGATTAGGTACCCCAATCTGAGAGCTCTGAAGATTCATTACTTGAAGTTCCATGATGGCAAGGCGTAA
Protein Sequence
MDDVVEVSGGLENACRLCLTTEQTRSSIFGVPHVSVPFAEKIRACLSIQVTTNDKLSTLVCATCIKNINHWHSYKDTCLKAQEKLQQWLAKHNTTVQPIQVTIKEEPLDVDYPDESSVPVTNHVNTTNDVTSHVDRMEVDDENTSTAITNTLTPVLPEHLLRLDESMDDEFNPDIHIKSEPIDTEDEVDIESVNSGELLINPMAVAVANNVNKDRVMEADSTQKPVFKRKFASKKTMRRGPRTHYRGLRLFKKKCDHCKINLHSKFSYTQHMSRYHGIVNNMSTKDIIKPPGQLPASTQKSKLSHQVDPVEPDMGEDPNKSNPEDAEFEKMIKTDRLTQVQKNIIGQLKTFSCYTCKQSFYDRRHTLNHIRQHMPDLRPYTCIACLTEFSDRSMYKLHCGASFECAMKIALVVPKVGNEKYFTCNMCLKPFDNRQDLLTHLAQHAEKQHKQQSQPVVKSPVKLTPLTQSSPIPRVESSPPKRPSTNAPAGPYMGGDPAHNHMCDLCGMIYRYKPNMFKHRELCMSLAENIRTSYRCIHCNMTYLVYKKFYTHVYNDHKKRDITCYTCYKKFPTADDYLAHHETHRTYSDKENTNEATNESEYAQGNQAVDDPLNSSQHPTDVAEKPFNCALCGEDFATKLELSEHRNLHLKVKIYSCVICRSMFSSSGALELHMKEHGIEDPSEQNANSSCVEYGTGNQSGFNESSMSAISDPGTKVNHCYECGKNFSNYANLKRHERNLHIQKLKRRWSCDECKRRFKSQSEYDDHITLIHGTRMRNTPKVVSPPQPQFSPLTGKPVMQCPKCPKTFTYQGNLILHCQNVHKENPFDHVPRPAASPRKVIITAQGHACDICGKTFREEQSLKTHRGWHLRTNRKWRLSSVNTPIKPSLNSNQNNTVMSGPGYTVTVAPTTTPKPAKARKSFPNNPSQKQLDVIAPLQCQVCDDRFSDVAELRKHLWDIHCARNKPEKTFASELQCELCTNKFTDEDALSEHMKWHSENPILSSHSNDTNSSSVASSLEPPRKNFCCDVCGKYYSNRKMFIRHKKLHKVLPASSMMHLQSLQTKRPSCAPCQKTFSTDASFRRHKASPCHHNAVRAQMHTTPAKKITTTAIVHHPPDTMRLQNVKKEPGSDTPSPITVGTKKRPVTCHICKMVFPNMSVLYQHKQLVHKVPQFKNKAGVGQQTECVPLMSAEGLVCCNLCGKQFPGISNLKQHFAHKHRVKSTMHPCTAPGCKLVFTSSHSLKSHEATHSSLIYFCNLCDRHVFSRPAMTKHMMTMHKAVYQSGANKTSLWSETDLTYYKPKELVNTVCPKCKIRYPNLRALKIHYLKFHDGKA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01467404;
90% Identity
iTF_01468257;
80% Identity
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