Ttub005683.1
Basic Information
- Insect
- Torymus tubicola
- Gene Symbol
- -
- Assembly
- GCA_035583055.1
- Location
- JAWWEQ010000027.1:21783539-21787203[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00083 0.17 13.8 0.1 1 20 52 71 52 72 0.96 2 17 2.6e-05 0.0055 18.6 0.5 1 21 90 110 90 111 0.95 3 17 7.5e-05 0.016 17.1 1.2 2 23 148 170 147 170 0.96 4 17 0.0042 0.89 11.6 0.2 2 23 175 197 174 197 0.94 5 17 0.00017 0.036 16.0 0.7 3 23 205 225 204 225 0.95 6 17 1.6e-05 0.0034 19.2 3.5 2 23 233 255 232 255 0.94 7 17 0.026 5.5 9.1 5.9 1 23 264 286 264 286 0.97 8 17 0.1 21 7.3 0.6 3 23 294 313 294 313 0.98 9 17 3.7e-05 0.0077 18.1 0.7 3 23 321 341 320 341 0.97 10 17 2.1e-05 0.0043 18.9 4.7 1 23 347 369 347 370 0.96 11 17 0.00017 0.035 16.0 1.6 1 23 537 559 537 559 0.98 12 17 0.00012 0.025 16.5 1.0 3 23 594 614 592 614 0.97 13 17 0.018 3.8 9.6 0.9 1 23 634 657 634 657 0.93 14 17 0.0045 0.94 11.6 2.6 1 23 666 688 666 688 0.99 15 17 0.021 4.5 9.4 0.1 3 23 696 715 695 715 0.96 16 17 2e-06 0.00043 22.1 1.0 1 23 721 743 721 743 0.98 17 17 5.8e-06 0.0012 20.6 0.5 1 23 749 771 749 771 0.98
Sequence Information
- Coding Sequence
- ATGTTTATCACAACGCACAGCAACATTCAACCGGTCACGAACACTGTTAACCGTGTGTTTGTGCTGCAGCCGACAGCTATAGTTCCTGACACCtcagaaataaaagaagaagtcGAGCTAATTGAGAATGAATTTGATAACGAACAAAGTGCGTACCAGTGTGATTCGTGCGACGAAATTTTCGACAATCGCTCATCATTAATCATTCATAAAACTGAAAAGTCCATTTTAAGGACGAGAGTAGCGTTGAAGGAACCCATTATCAAATACACGTGCGATACGTGTGATCGGTCGTTCGTGTCGAAGGGCATGTTCGAACGTCACTACAAGATCTGCGGTTTCGTTGAGACCAACGATCTGCTCGCGAGTAGTACTCGACGGCGACTGCGCAATCAGGCCCAACCAAAGAAGCTGAATGAAAACGGCGAGGAAGAACCGTCGGTATGTCAAAAATGCAGCAAGGTATTCAAGAAGGTGAAGTATCTCAAGGTCCACATGACGACGGCGCATGGAGAGCACATAGTGTGCCAGATCTGCGATATCAAGTGCGATACAATGGCCTTGTTAAAAGTTCATATGAACGACGCGCATAGCGGTGACTTCACGGAGCACTGTAATATCTGCGGCAAAGGCTTTTACCTCAGGCAATCGTTAAAGGTCCACATGGCGGCGCATCTGCGCGACGATAATCTCTGCATGTGCGAGCAATGTGGCAAGAGCTTCAGACACGAGGTTTATCTGAAGAAACATATACAGCTCGTGCACGTCGATGTGCCGGAGAGAAAGCGTTTCATCTGCGAGGAGTGCGATTACGAGACCAGCCATAAGACCTGCTTTCGCGAGCACATGTTCAAGCACACAGGCGAGGATATCATTGGCTGCGAGGTCTGCGGAAAGCAGATGCGCAGGAGTTACCTTAGGATACATTCCCGAATACACACGGGTGAGAAGCCCGAGATATGCGAGTTCTGTGGAAAAGCCTTCAGTGCCAGAAAGTACCTGACGAAGCATAGGATCACCCATACCGGTGAGAAGCCCTATGAGTGCCAAAAGTGCGGTAAGAGGTACACGCAGCGTGGCACGCTGACGATGCATTTCAGGCGGCATCATCCTGAGGAGGCAAACACCTGGATCGCCAAAGGCCCGGGTAGAAGGCCATTTTCCGAAACGAGCAAGGGAACAGTTAATAAAGCCAGGCGGGAAATGATGATTGGCGAGGATGGAAGTATAGTAGAGGTTGTTAAGACATCAGAACAGGAACACGACGAAGAAGTGAACGAAATGATAAatgaggaagaggaagaagtagGAGAAGTGGTAGataaggaggaagaagaagcagcagagATCAATGACCAAGATGAGGAAACGACAGTAATGAATGAGGAAGAGGAAGGGggagaaattataaatatggaTGAAGAACAGGAAGAATTCATCGATGAAGATGGTGAGAATATAATTCATGAAATAGATGTTGATGAGGAGGGAGTAGtggacgacgaagaagaaaatgaagagACTTTGGAATACGTCATCATCGCGACGACGACCACTTTCACAGCCAACGACAGTAGCAGTCCCTTGAAATCCAAATGGCACCGTCAGCACAAGTGTCGACACTGCGCCGAAGTGTTCCCAAATAAGCCACAGCTCGCTCTGCACGTGCGCACGCATACGAACAAGAACTACGGCTGCAACTTCTGCGGTGAGCCTCAATTGTCCGCTGACGCTCTCAGCCAACATCTTGGCAAGCAGCATCCAAATCTCAGCTTTGGCTGTGAGATCTGCAACAAATTTTACTCCAGCAATCGCGCTCTTAATCTCCATCAACGTTTTCACAATAACAAACGAAGCAAAGCAAATGGCAACAAGAAGAACAGTGACGCTGACGATCGACACGTGTGTCTCGTGTGTAACGCAAGTTACAGCTCTCTTGCCTATCTTAAGTTACATTCGAAGCTTCGTCATGCAGATCCGAACACGCGACAATTGTACAGGTGTAACGAGTGCAGCTTTGTCAGTTACTACCGGACGAATATGAGGAAACACGCGAGAAGTCATACAGGGGAGAACTTAGAACCATGTAACGTTTGTGGCAAAGCTGTCAACAAAACCTACATGGCTGTACATACAAGGATACATACCGGTGAGAAGCCGCACGTGTGCGATTACTGTGGCAAAGCGTTCAGCGTGAAGAAGTACCTGGTCGTCCACGAGAGGACTCATACAGGCGAGCGGCCTTTTCAATGCAAATTGTGCGACAAACGGTTTACTCAGGAGTCACCGTTAGCCGCACACGTTAAAAACCACATGCGTAAGAACGATTTTGGTGGCAACGAATAA
- Protein Sequence
- MFITTHSNIQPVTNTVNRVFVLQPTAIVPDTSEIKEEVELIENEFDNEQSAYQCDSCDEIFDNRSSLIIHKTEKSILRTRVALKEPIIKYTCDTCDRSFVSKGMFERHYKICGFVETNDLLASSTRRRLRNQAQPKKLNENGEEEPSVCQKCSKVFKKVKYLKVHMTTAHGEHIVCQICDIKCDTMALLKVHMNDAHSGDFTEHCNICGKGFYLRQSLKVHMAAHLRDDNLCMCEQCGKSFRHEVYLKKHIQLVHVDVPERKRFICEECDYETSHKTCFREHMFKHTGEDIIGCEVCGKQMRRSYLRIHSRIHTGEKPEICEFCGKAFSARKYLTKHRITHTGEKPYECQKCGKRYTQRGTLTMHFRRHHPEEANTWIAKGPGRRPFSETSKGTVNKARREMMIGEDGSIVEVVKTSEQEHDEEVNEMINEEEEEVGEVVDKEEEEAAEINDQDEETTVMNEEEEGGEIINMDEEQEEFIDEDGENIIHEIDVDEEGVVDDEEENEETLEYVIIATTTTFTANDSSSPLKSKWHRQHKCRHCAEVFPNKPQLALHVRTHTNKNYGCNFCGEPQLSADALSQHLGKQHPNLSFGCEICNKFYSSNRALNLHQRFHNNKRSKANGNKKNSDADDRHVCLVCNASYSSLAYLKLHSKLRHADPNTRQLYRCNECSFVSYYRTNMRKHARSHTGENLEPCNVCGKAVNKTYMAVHTRIHTGEKPHVCDYCGKAFSVKKYLVVHERTHTGERPFQCKLCDKRFTQESPLAAHVKNHMRKNDFGGNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -