Ttex033766.1
Basic Information
- Insect
- Torymus texanus
- Gene Symbol
- -
- Assembly
- GCA_036873485.1
- Location
- JAYJLV010042469.1:32230-40362[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2 5.3e+02 3.3 2.5 1 20 114 133 114 138 0.86 2 20 0.011 3 10.4 4.6 1 23 143 166 143 166 0.96 3 20 9.6 2.5e+03 1.2 1.1 2 12 170 180 169 189 0.75 4 20 0.0014 0.38 13.2 2.0 2 21 233 252 233 253 0.95 5 20 0.018 4.8 9.8 0.4 1 23 266 289 266 289 0.96 6 20 2.2 5.7e+02 3.2 0.2 1 12 413 424 413 433 0.83 7 20 4.2 1.1e+03 2.3 0.3 4 23 445 467 444 467 0.86 8 20 0.0034 0.9 12.0 1.4 2 22 489 509 488 509 0.95 9 20 0.19 50 6.5 0.6 1 23 518 541 518 541 0.87 10 20 0.026 6.8 9.3 6.6 1 20 550 569 550 571 0.94 11 20 0.05 13 8.4 4.0 3 23 581 602 579 602 0.96 12 20 0.074 19 7.8 3.8 1 22 612 633 612 633 0.96 13 20 2.5 6.4e+02 3.1 0.1 1 12 715 726 715 736 0.76 14 20 2.4 6.2e+02 3.1 5.4 1 23 744 767 744 767 0.95 15 20 0.0069 1.8 11.1 1.3 3 22 778 797 777 797 0.95 16 20 1.4e-05 0.0037 19.5 1.0 3 23 807 828 805 828 0.97 17 20 0.044 11 8.6 0.6 1 22 838 859 838 859 0.93 18 20 0.0012 0.32 13.5 5.8 2 23 867 889 866 889 0.97 19 20 0.014 3.7 10.1 3.5 1 21 940 960 940 961 0.95 20 20 3.2e-05 0.0084 18.4 2.6 1 23 969 992 969 992 0.98
Sequence Information
- Coding Sequence
- ATGGCTTATTTTCATCGACTTATTATAGATAAGCTTCCAATTGAATCAATTCGTTCACTCGTGAAAGAGGAAATCGATTTAGCTGTTGATGAACTTTATTACATTCGAGCTTCGGATGATTCTGATATTGATTTGAATTCAACAAAAAACACTGATTTAGAGTCTGTTCAGGCAACGGAAAAGGAGACATATGATGCCGATAATGCGCATATGCAAACTCAAGGAGATTTCCTAGCTACTGCACTCCCCAAGCGCATACGTCTTCAGTGCAAATCGTGTGGCCGTACCAACGCCCTCGCTTCTTCCAGAACCTGCTCAGTCTGTTCGCACACGATGTTCTTCAGATGTAAGGCCTGTGACAAGGACTTCCCAACCATCGAGGATTGCGTCAAGCATCAGGAGGCTGGTTGCCATCTTCTACCTATTTACAACTGTCACGAATGCAAGTTCTTCACCAATAGCTCATCGGAGTACAATCGCCACAAGCGCCTCATTCATACATTTTCGAAGTGCGAGCGCTGCAAGCAGGATTTCAAGCGCGGTTTCATGTACAAGCATCGACAGATGTGCGGCAAGCCGCCGAAATACCAATGCCCTCACTGTAGCTATGCTCATCATTTTAACTACGTGTTACGCGAGCACGTAGAACGCGTACATAGCAAAGGTAGTACCCCTATTAATGTGACGGAGCAACGTCGCTGCCCCGAGTGTAAAAAAGTTTGCCGTTCAATGTCCGCATTGAGCAGGCATCGGAAAAATGGATGCCGGCTTCCAATGGTGGTGCAAATCCATCGCTTCAGTtgccacgtgtgtgtgtatgcctcGTTCACGTGGGCGAGTCTCGTCACCCACATCAAGGAGATGCACGCACACGCCTATCCTGCAGCAGAGGAAAAAGATCCACTTAACGTTACCGAATCTAAACAAAGTGATCAACTGGATGCAGTTGCAGAAGagAGGGATCCACTTAACTTTGACGAAACGAGTAAAAATAGTATATCAGATTCACTATCTATCGAAAAAGATCCCCTGGATTTTGATGAAGATTCCATACACCGGTCAATTGTAAAAGAAGAACTTCAGATTGCCGGCGATTTCGACTACCTAGTAATGACGGACTGTTCAAtGTTGGCTCAACAGACGGACCTGCTCTGCGCAAATTGCGGCATCCTGGGCCACGATTACCCCAGGGAGCATGGATTCTACAAGTGCGTGACGTGCCAGAGCTGTCTCTTCTACCGCTGCAAGGTCTGCAATAGCGAATTCAATCGCGGTGGCGCCATCTACCACGTGAACACGATGTGCATACCTAAGATACGCGAGAAGGGATGTGACTTTCCCAACTGCCGCTTTCGCGCCAGCGACAAGGCCACAATGATTCAACACCAAAGAGCCGAGCACAGCCTCACAGCGATACCCGGCAAGAAGTTAGGGTCAGGCCAAAAAGGTTTATTATCTTACGTAAGCTGTCACAGCtgtaataaactatttaaacgGCCGAATTTCCTGGCGAAGCATCTGAAGACCTGCGGCAAAGGTGGCCGTGAGATATTCAGGTGCTCAAAGTGCCCGTACAAGTCGCGTAGACGCGACCTGATCGTCGACCATGAGACCAACGTGCACAAGGAGGTCGACCTCAGTGAATATCACAAGTGTCCGAGTTGCGACAAGTGTTACAAACACGAGAAGCACATGAGAGTACATTACGAGCAGATGTGCCAGAACAAAGAGATCAGCAATTGCGACCACTGCAATTATACCACACACGTCAAGTTATACTTGGTAAGGCACATGAGAGTCAGGCATCCTGATCTGTACCCCGACGACGACAAATTCACTTGTAGGCTTTGCGGCAGGCGATGCTTCACGCTCCGGCAACTGAGCTATCACCTCAGGAGAAACAAATGTCCCAAGgaGGAATATGATGAGGGCGTTGAAGAATCTTTTCCTATTATCGAGGAAAACTTTATTGATGTTTCAGACAGTAAAATTGAAGATGAAAGTACCGAAGATCCACTGGGCAAAGATAATTTAGTGTACAACGGCTACGTGCACCTGTACTGCGCCACGTGCAAGGAGCGCGCGCCCCCGACTATTCGTAAGCGCGTGAGCACGTGTCCGCGTTGCTGCCGCATCTACCACTACCAGTGTCCTACATGCGCCCGTGTCTACGCCAAAGGTATCTCGGCATACAAACACGCACGCAACATCTGCGGCAAGCTACCGCGTCATCGCTGTCCTCACTGTCCCTTCGCCAGCTACAATTCTACAACCACCGCTACCCATATTAAGCACCGTCACACCCTCATCGATCCACGCGACTATGCGGCCTGTCCGAGCTGTGGTAAACGCTACAAACACGAGAATAAAATGCGTACTCATTTGAAGACCTGTGGTCAGGGCCGGGTAAAGTTCGGCTGCTCCTACTGCGAGCTCTCGTTCGCCAATAGTTACAATCTTAAGAAGCACCAATTGATGAAGCACCAAGAAACCATCGATCAACAATCCATTCACATATGTCCCAACTGCTCCAAGGTTTATCTGTACAGAACGAGCCTTGAGACGCATATCAAGAAAGGCTGCGGCGAAACGATAGTGAGATGCTTCCACTGCAAGATGAACACCACGAACAAGAGAAATCTCACAAAGCACATGAAGAGAATGCACCGGGAATTGTATGAAAACCAAGAAGTTAGAAATCCAAGTTTCCTCTCGTGGCGGTCGAAAATCATGCCCGAGCGTCTAActcagcaacaacagcaacagcagcagttaCACCAGCAGCAACAGGGCAGCGAACTGGCAGGCCACCAGCGCTTCCCATGCACTGACTGCAGCAGTGTCTTCAGTCGTAAATGCAATCTTTACTATCACCGGAAGTACGAATGCGGCCAGCCGCCGCGATTTCAATGTCCCTATTGCCAGTACCGCACGCGGCACCAGTCAAACGTGCGTGCCCACGTGCGTCGCATCCATGCAGGCAAGGACGTATTCTTTATTGACGTTGGCCTGCAGCCGTTTGACGTTgtctga
- Protein Sequence
- MAYFHRLIIDKLPIESIRSLVKEEIDLAVDELYYIRASDDSDIDLNSTKNTDLESVQATEKETYDADNAHMQTQGDFLATALPKRIRLQCKSCGRTNALASSRTCSVCSHTMFFRCKACDKDFPTIEDCVKHQEAGCHLLPIYNCHECKFFTNSSSEYNRHKRLIHTFSKCERCKQDFKRGFMYKHRQMCGKPPKYQCPHCSYAHHFNYVLREHVERVHSKGSTPINVTEQRRCPECKKVCRSMSALSRHRKNGCRLPMVVQIHRFSCHVCVYASFTWASLVTHIKEMHAHAYPAAEEKDPLNVTESKQSDQLDAVAEERDPLNFDETSKNSISDSLSIEKDPLDFDEDSIHRSIVKEELQIAGDFDYLVMTDCSMLAQQTDLLCANCGILGHDYPREHGFYKCVTCQSCLFYRCKVCNSEFNRGGAIYHVNTMCIPKIREKGCDFPNCRFRASDKATMIQHQRAEHSLTAIPGKKLGSGQKGLLSYVSCHSCNKLFKRPNFLAKHLKTCGKGGREIFRCSKCPYKSRRRDLIVDHETNVHKEVDLSEYHKCPSCDKCYKHEKHMRVHYEQMCQNKEISNCDHCNYTTHVKLYLVRHMRVRHPDLYPDDDKFTCRLCGRRCFTLRQLSYHLRRNKCPKEEYDEGVEESFPIIEENFIDVSDSKIEDESTEDPLGKDNLVYNGYVHLYCATCKERAPPTIRKRVSTCPRCCRIYHYQCPTCARVYAKGISAYKHARNICGKLPRHRCPHCPFASYNSTTTATHIKHRHTLIDPRDYAACPSCGKRYKHENKMRTHLKTCGQGRVKFGCSYCELSFANSYNLKKHQLMKHQETIDQQSIHICPNCSKVYLYRTSLETHIKKGCGETIVRCFHCKMNTTNKRNLTKHMKRMHRELYENQEVRNPSFLSWRSKIMPERLTQQQQQQQQLHQQQQGSELAGHQRFPCTDCSSVFSRKCNLYYHRKYECGQPPRFQCPYCQYRTRHQSNVRAHVRRIHAGKDVFFIDVGLQPFDVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -