Ttex001989.1
Basic Information
- Insect
- Torymus texanus
- Gene Symbol
- -
- Assembly
- GCA_036873485.1
- Location
- JAYJLV010000011.1:8363116-8366266[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0047 1.2 11.6 0.9 1 23 276 298 276 298 0.95 2 12 3.5e-05 0.0091 18.3 1.3 1 23 306 328 306 328 0.98 3 12 1.2e-05 0.003 19.8 0.7 2 23 336 357 335 357 0.97 4 12 0.00053 0.14 14.6 1.8 1 23 363 385 363 385 0.98 5 12 1e-05 0.0026 20.0 2.2 1 23 392 414 392 414 0.98 6 12 2.2e-05 0.0057 19.0 0.7 1 23 420 442 420 442 0.95 7 12 1.3e-05 0.0035 19.6 0.1 1 23 448 470 448 470 0.98 8 12 7.5e-07 0.0002 23.6 1.2 1 23 476 499 476 499 0.96 9 12 5.7e-06 0.0015 20.8 0.5 1 23 505 528 505 528 0.96 10 12 6.2e-06 0.0016 20.7 2.9 1 23 534 556 534 556 0.99 11 12 9.6e-05 0.025 16.9 0.4 1 23 562 584 562 584 0.94 12 12 0.00039 0.1 15.0 0.2 1 23 590 614 590 614 0.94
Sequence Information
- Coding Sequence
- ATGACAGCAGACACAGAAAAAGATGCTACCTGTTGTCTACTTTGCAACAGCAAAGTAGGTGTATCAACCAGAAACAGTGTTAGCGTTTTAGGAGATAATGCTGTAACAACTACAGATAAACCTATACTTACGGTTCTTAGtcttgttttacaaaaaattgtaaaccaaGACAATATTCACTCGTCTGTAGTTTGTAAGAAATGTCATAAACTCATTAATGagGCTGATGAATTAGAAACTAAATTATCAAAAGTTAGATCAGAAATATCTAATTTATATAAGAAGACTAGCACAAAATTCCGTGGAACGGATATAAATGGAGATGAATACAACGACCATGATTATActgataatgaaaatattgaaagagCAGTAGTTACAaagtcagaaaaatttaaagaaactaagaaaaaaattaaaaaagtgacTATTTTAGAAGCACCAATTGAAAtacaaACTTCAGAATTAGTTCCTGAAGACAAACTTAATAGAGTTGAAAATGAGGAAATTATAACAGAATATGAAGAATTAGAGCAAATAGATGGCCAAGAAGATCAATGTGAAAATTCTATGGATAATGATGATATCCAAGATATTAACTACGATAGAAGTTCTCCTGAAACTGAATCACAAATAGAAGAAGTTATTGTACAAAGAAAGAATTctactaaaaaacaaaaagtgagAAAAGAAGAAACTCCAGAAGAaTTTGCTGTGAGAGATGGTGAAAACTACATATGTGCTCTCTGTCCTGgtgaaaataaagaagcaaGAGATGCTAAAGGTATTATTGCCCATTTAAAAGATGAGCATGAAATTCGATTATACATTTGTGACATCTGCGGTGatcaatttagaaaaagaacCGAATTATCACATCATTTGGATGACCATGTCGCAAAAGAAGAAGGTGATTTCCAATGTGAAGTATGCAatagaatatttacaaatttacgatTGTTCCGTATTCATAAACGTATTCATTATCCCCAAGTTAAATCTTGGACGTGTGAAACTTGTGGTAAACGATATAGCTCGAAAAATCTACTTGAAGAACATACTAATACTCATACTGGTAATCGACCTTACATTTGTGAAGTATGTGGTAAAGACTTTGCTTCAAAGTATACTCATCGAGCTCATACAAAAACTCATGAAGTAAGACCTAGGCCTTTTGAATGTACccaatgtaataaaagtttccTCAGTCAACAAAATTTGACTCAACACATTAAAACACATAACGGAGTGAAAGAATTTATTTGTCATCAGTGCGgGAAAGCATTTGGTTCTGCACACAATCTTGAAGTACACAATATTGTTCACACTGGATATAAGCCATACATTTGCCGCGTTTGTGGTAAAGCGTTTGCACGAAAAGCGGAAATTCGTGATCATGAAAGAACGCATACTGGAGAAAAACCTTATCAATGTGAGTTTTGTGGAGCAACTTTCAGCCAAAGGTCGAATTTACAGTCACATAAACGTGCTACACACTACAATGACAAGAGATACAAATGTGATGAATGTGGGAAAGgttttaagagaagaagattGTTGGATTATCATATTAAAGCTGCTCACACTGGAGAGCGTCCGTATAAGTGTGATACATGTACAGCCACTTTTGTTTATCCTGAACACTTTAAAAAGCACATGCGCATTCACACAGGAGAAAAACCTTATTTATGCGagGTTTGTGGTAAAGCCTTCAATAGCAGAGACAATCGGAATGCCCATAGATTTATTCACAGTGATAAAAAGCCTTATGAATGCTTAGTGTGTGGGATGGGTTTCATGCGGAAACCACTACTTTATACTCATATGCAAACTCAGggtCATTTGAATGATACTATTGTTGTAAATCAACCAAGACTGACAACTGAGGATGACGTGATCATTCAAGATAATAGAGTTCATATAGTTGTGGATAGTGAAACAGATCaaATTGACGAAAATACAGAACTTATTGTGACGGACCTTAAAGACCACGTAATTATACAAGATGGAGACGAACAAAATGTAATAAGCCTTGAAGGTGATATTCAGGGCCACGAGATGAATCAGATGGCTGATGGAGagATCAGCTTCGAAGAAGCCGAAGTAATGGAGTGTAAAACGGAAGAGGTTGACGCTGTGGAAGAGGTATATGGCTACCAAGATGAAGAAGGTAATACCATAGTCCTACCACCCGGCACCGACCTCAAAGATATCATAGGAGAGGGAAACAAGACGATGCGACTCGTGCAGATCAGCCTACCGGTTGACGGCAGCGGCGACGGCAGAAGTTGGCTGAGCttagtacaaaattaa
- Protein Sequence
- MTADTEKDATCCLLCNSKVGVSTRNSVSVLGDNAVTTTDKPILTVLSLVLQKIVNQDNIHSSVVCKKCHKLINEADELETKLSKVRSEISNLYKKTSTKFRGTDINGDEYNDHDYTDNENIERAVVTKSEKFKETKKKIKKVTILEAPIEIQTSELVPEDKLNRVENEEIITEYEELEQIDGQEDQCENSMDNDDIQDINYDRSSPETESQIEEVIVQRKNSTKKQKVRKEETPEEFAVRDGENYICALCPGENKEARDAKGIIAHLKDEHEIRLYICDICGDQFRKRTELSHHLDDHVAKEEGDFQCEVCNRIFTNLRLFRIHKRIHYPQVKSWTCETCGKRYSSKNLLEEHTNTHTGNRPYICEVCGKDFASKYTHRAHTKTHEVRPRPFECTQCNKSFLSQQNLTQHIKTHNGVKEFICHQCGKAFGSAHNLEVHNIVHTGYKPYICRVCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDECGKGFKRRRLLDYHIKAAHTGERPYKCDTCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYTHMQTQGHLNDTIVVNQPRLTTEDDVIIQDNRVHIVVDSETDQIDENTELIVTDLKDHVIIQDGDEQNVISLEGDIQGHEMNQMADGEISFEEAEVMECKTEEVDAVEEVYGYQDEEGNTIVLPPGTDLKDIIGEGNKTMRLVQISLPVDGSGDGRSWLSLVQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01467381;
- 90% Identity
- iTF_01469930;
- 80% Identity
- -