Basic Information

Gene Symbol
Trerf1
Assembly
GCA_036873485.1
Location
JAYJLV010000046.1:20614265-20643387[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.7e-08 5.9e-05 25.0 0.0 2 46 1066 1110 1065 1110 0.97

Sequence Information

Coding Sequence
ATGCGGCAAAGTGTTCAACAACGCATCGGCGCTCACGAAGCACAAGCTGACGCACAGCGACGAGCGGAAGTACGTCTGCACGATGTGTGGCAAGGCGTTCAAGCGGCAGGACCACTTCAGCAGCAAGCCCAACAGCAAGTGCAGCAACAAGCGCAGCAAAGCCAACAGcaagcgcagcagcagcagcaacaacaacagcaacagcagcagttaCAGCAGCAGCTGACGCAAGCTAATTCACCCGGAAGTGCGAACGGTGGCAAAATCGGCGGAAGCCCATCGCCCGGAAGTTCAGCGTCTCCAGGTGCCGTTGCTCCCGTGTCCAACAAGTCGCCGGCCGAACCGAAGCCGGTCGAGTGCAATTTGTGCCATCGGAAATTCAAAAACATACCGGCTCTTAATGGCCACATGAGACTGCACGGTGGTTACTTTAAGAAGGATGCTGAAAATAAGAAGAGCGAAAAGAAAGAAGTTGTTGGTCCTCCGCTGCAAACGGCTTCTGTTAGTGTTCGAGCCCTCATAGAGGAAAAGATCATTCAAAAAAGAACGACAgCAACAGACGCGAACGCGCAACAGCAACAGCGTGTGAACGTTGCATTTGCTAACCAGGCGAGTACTGTGACAACGTCATCATCAACGACTGACgctcaacaacaacagcagcaacatcaaCAACACATGGTGGGCAAGATGAATTTTGCAGTACCAGCGCCTCCGCCGCTCAACGGCGGTGAGAAAGTCCGTCGACTGTCCGATGGCGAACACTTCAGGCAGCCGAACGTCACAATCGCAGCCCACGCGAGCTCCGTGCAGAAACAGCTACAGGAAGCTCAGACACAGGCGCAGGCCCAGGCTCTGGCCGACATGATTCTCAAGGGCACAACGAAGATGGCTGTGAAACGCGCTACTTCTGATCCGGGCCAACGCGTTCAGATGACTTATCAGACGAGCGCGGTAACGAACAACGTTCAAACACCTCAGACCAcacatcaacagcagcagcagcagcagcagacgcaGCAAATggttcaacaacaacaaatgaATTCTCAACAGCAGCAatcgcaacaacaacaacaacaacaacaacaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGCAGCAAATggttcaacaacaacaaatgaATTCTCAACAGCAGCAatcgcaacaacaacaacaacaacaacaacagcaacaacaacaacaacagcaacaacaacaacccagTGTCACTGAAAGCTTCACTATGACTGGTTATCCAGAAGATGGAGGCTACTTTAGTCCTAGTCTACAGGATGAGGTATTCCAGCAGGTGACCTCGGTGCCGGACAGCGTCTTGCTACACGCCACTCAATTGGATGCCATACAATTTCAGACATCGAGCCTGCTGCAGGAGCAAGCAGCGACGGAAGCTCTCCAGGAAATAAACCTCGAAGAGCGCTTCTCGTCTCAGCACACGGTAAATCCCGACCTGCAGGCCCTCGTCAACTCACCCCTGCCGGACTCCCTGGCTGAGTTCAGCACTTACGGAGCTAACTACAATGAGAGCGGGCACACGCTACCGAGTCAGTCACCCTTGCCGTCGCCGCTCACGCGTCACGATAGTCCGAGCTTCACGTACCCGACGCCACCAGCGAGCCAGGAGGGCCTGCTCAGTGGCAGTCTACCCTTACTCAGTCCGCAGGAAGACAGCGATGCAGTGCACTCGGTATCCTCGCCCCTCTCCGCTGCCTTCTACAGTACAAGCATGTCCTCAGCTGCTGCCATCGAGGAAGCCCTCAGCGAGGTGTTGCCCGACGAGACAGACGGTGACGGTGGGGACCTTTACGGGCCCGGCTGTCCCAATCCTCACTCGCCTCTGCCGAGTCCGCTCTCAGCGACACCGGCGCCCTCGCCCCTTTCCTCTCTACCACCCTCCTCCGTATCCTCGCCGGGACCCGGCAGCTTCACCACAGCTAGCTTTCCCATGTCACCACATCATGCGCTGCAAAGCCAAATGATGCCCAATTCAGAGGACCCATTGCTTTCGTCAAGTCCCAAGGACTTCGGTGCCGGTCGGCGAAAGTTTGAATTCCAGTCGTACAAGCTCTTCACCAACCAGAATCTTGTGGACTTCGGTCTGGGCAACGGTAGCGTTGCAGGTATCGTCGTCGACAGCAACGGCGAATTCAAGCTCATACAAACGACTGGCCTCCAGAAGGCCAATGTCTACGTGCAGGCGGGCGCTCTCAGTCCGGCGCTGGCCTTCCGCAAGGAGATTTGTCTTAGCGGAAGCAAACTCGAGCAGACGAACAATGTCAACGTCAACATGCTCAACGGGCAGAGTCCAATGTACCAGCAGGCCCAGATGCAACAGGCCATCAATCCTGCCAAGTTCCTCATTCAGACGAATCAAGCGAGCAAGCCCACGTTGAAGCACAAGTCATGCAGTGGCCTCCCAATACCCGTGGAGCAGATCAAGGAGGAGGAGACTGTGGACGAAGACGTTTTTCTAAGTCCGAGCAGCGTACCGATCCCCACATCGGGCAGCCCGGCTCGTCACCAGAGAAAAAGACCACGTCTCGAAGGTCCCACCTCACACTGTAACAGTTCGCTGATCAACGGTGCGCACGCGTATCCGTCACGACTACGTCGCGCTTGCGATCGGCACTGGGACAGCAGTTACACACCGCCTCCGATACTTGATCCCTCCAGGCCTGGACCTGGACTCTACGCTAGACTGCATCAGCACGAACGCGACGCTGCTGACTTCAGCTCGGACGACTCGCAAGGTAACGATGGACCGCCCCCGAGGATCAACATTGGCACTAGGTACCAAGCGGCGATACCACAGCTCTTCGTTGAAGGCGAGACAGACAGGCTTACCACGGAGCAGGAGCTGGACCATCTCCTCTGGGATCCTGGCATCGACAGCGCCCTCACCGAAACCGAACTGGACATGTACTTACAATTTGCCTGCTGCGCTGCTACACCCGGTGGCGGAAGAAACAAAGAATACGCCCTTCAGCTTTTACACATGTGCAAGGGCAATATTCGAGAAGCCATGCTGAAGCTAATGCGGCCAACTGCGATGCTCGCGTCGGAGCATCCGTTGCTGCGAGACGAGTGCAACGATTCCGGCCGCTGGACGACCTATGAGATGGACACCTTCTATCAAAGCCTGCTTAAGTACAACAAGGACTTTTCAGCGATAGCACGCGATATCGGAAGCAAGAGCACAATGCAGTGCGTGCAATTCTATTACCTCTGGAAGCGGCTCTGCCCCGATGAGTACAAGAGACTGCGGCTGCGCTACGGCAGGGTCAAGGTTAAAGCTGAATGTGCCAAGGACAGTAAGGATACGAAGGAGCTGCGCGACGCCATCGCCTCGGTCACGGAGCTGGACTTCAGTGAGACCAAGTCCATTCTTCATCGAACCTTGatGCAAACCACAAATGAAAGAGAGAATTCTGCCACGTTAACAACCAGCGACGGAGAATTGCGACTGTTCGCTTATGATTTTCAAGATAGCTTTAGCGGGAGCGTAACAGTAACCATGGCCGGGAGTGCCGGGATCACCCGCGCCCCCGGCTCGTGCACCGGCAAAGCCGGCGGGGCCGCCGGCTACGCCACAGTCGACCACCACACCAACTCACAAACTCACACTAGTACCGAGCAACCACTACCCGCGCCCACCCCACTTCACTACCCCTGCAAGATTTGCGGGAAAGTATTCAACAAAGTGAAAAGCAGAAGTGCTCACATGAAGTCTCATCGGCCAATCCCCACGCTAGATTCAACGGCACAGGAATCTAGAAAGCAACAGCAACTACCTAATAATACTCAACAAATTCAACCAAATCATCACCAGCATCAGGCAAGCAACATGCCAATTCAGCATCAGCATCAGGTAGCCGGCGTGTCaattcagcagcagcagcagcagcagcagcaaagccAGCTATTGCTTCACGCACAAGACTACCACCAGCAAAATCAAAGCCAGCAGCAACAATGTCAACGGTCGTCGCTGAGCTGCGACATCCAGTCAAATCGCGTGTGGCACAATCCACCGCGACTGCGACCGCCATAG
Protein Sequence
MRQSVQQRIGAHEAQADAQRRAEVRLHDVWQGVQAAGPLQQQAQQQVQQQAQQSQQQAQQQQQQQQQQQQLQQQLTQANSPGSANGGKIGGSPSPGSSASPGAVAPVSNKSPAEPKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDAENKKSEKKEVVGPPLQTASVSVRALIEEKIIQKRTTATDANAQQQQRVNVAFANQASTVTTSSSTTDAQQQQQQHQQHMVGKMNFAVPAPPPLNGGEKVRRLSDGEHFRQPNVTIAAHASSVQKQLQEAQTQAQAQALADMILKGTTKMAVKRATSDPGQRVQMTYQTSAVTNNVQTPQTTHQQQQQQQQTQQMVQQQQMNSQQQQSQQQQQQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQQMVQQQQMNSQQQQSQQQQQQQQQQQQQQQQQQQPSVTESFTMTGYPEDGGYFSPSLQDEVFQQVTSVPDSVLLHATQLDAIQFQTSSLLQEQAATEALQEINLEERFSSQHTVNPDLQALVNSPLPDSLAEFSTYGANYNESGHTLPSQSPLPSPLTRHDSPSFTYPTPPASQEGLLSGSLPLLSPQEDSDAVHSVSSPLSAAFYSTSMSSAAAIEEALSEVLPDETDGDGGDLYGPGCPNPHSPLPSPLSATPAPSPLSSLPPSSVSSPGPGSFTTASFPMSPHHALQSQMMPNSEDPLLSSSPKDFGAGRRKFEFQSYKLFTNQNLVDFGLGNGSVAGIVVDSNGEFKLIQTTGLQKANVYVQAGALSPALAFRKEICLSGSKLEQTNNVNVNMLNGQSPMYQQAQMQQAINPAKFLIQTNQASKPTLKHKSCSGLPIPVEQIKEEETVDEDVFLSPSSVPIPTSGSPARHQRKRPRLEGPTSHCNSSLINGAHAYPSRLRRACDRHWDSSYTPPPILDPSRPGPGLYARLHQHERDAADFSSDDSQGNDGPPPRINIGTRYQAAIPQLFVEGETDRLTTEQELDHLLWDPGIDSALTETELDMYLQFACCAATPGGGRNKEYALQLLHMCKGNIREAMLKLMRPTAMLASEHPLLRDECNDSGRWTTYEMDTFYQSLLKYNKDFSAIARDIGSKSTMQCVQFYYLWKRLCPDEYKRLRLRYGRVKVKAECAKDSKDTKELRDAIASVTELDFSETKSILHRTLMQTTNERENSATLTTSDGELRLFAYDFQDSFSGSVTVTMAGSAGITRAPGSCTGKAGGAAGYATVDHHTNSQTHTSTEQPLPAPTPLHYPCKICGKVFNKVKSRSAHMKSHRPIPTLDSTAQESRKQQQLPNNTQQIQPNHHQHQASNMPIQHQHQVAGVSIQQQQQQQQQSQLLLHAQDYHQQNQSQQQQCQRSSLSCDIQSNRVWHNPPRLRPP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01465125;
90% Identity
iTF_01467925;
80% Identity
iTF_01469296;