Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 5.5e-09 9.1e-06 27.2 0.1 2 42 28 67 27 70 0.94

2 2 4 6.7e+03 -1.1 0.0 31 45 128 143 126 143 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	5.5e-09	9.1e-06	27.2	0.1	2	42	28	67	27	70	0.94
2	2	4	6.7e+03	-1.1	0.0	31	45	128	143	126	143	0.81

Coding Sequence: ATGGAtaaagtacgaataaaaaaaaaggaacaatgcGGGAAAGTAAAAGgtattaagaaaaaagtaagGATGTGTTATTCGCGAGAAAACTTATTGTTGGCCGTAAAAGAAGTTTTGGAGGGTAGTTCAATAGCTTCTGCTTCCAAGAAATATAATGTACCTGAGGCTACAATCCGCGCgagaaaaaataacaagtacGCGGATAAAAAACCAGGGCCAGCGTCAGTTTTATCCGCAAGTCAAGAGGCAGAGTTGGTGGAATGGGTGATGGAGAGTGGTAGGCGCGGATTTCCAGTTACGAAACCTCAACTTTCCGATAGCGTTAAACAAATTTGTGACGATTCCAAGAAAAAGACTCCGTTTATTGATAACAGACCCGGTAGGACGTGGTACGATTCTTTCGTAAAACGGCATCCTGAAGTAAGCCAAAGACTCTCAGAAAATGCTTTATTAAACAGATCAAGAGTCTCTGAAACTAGTCTTCGTACATGGTTTCAAGaagttaaaaagtattttataaagaataatttattatctctgGAACCAACAAGAATATTCACTTGTCAGGAGATAAgaGTTCCCTTAAATCCGACATCACTTACAGcactagaatttaaaaattcagatgACCTAGTTGAAAacagtgaaaaagaaaatatatctgTTCTGATAACAGCAAATGCTGCAGGAAATTTAGCTCcaacatttgttttatttgctgGAAATTCATTGCCTAAAAATGCAATGGTATTTGCTCCATCTGAGTTTACTCTTGGATACACCGAAAATGGGTGGATAACAGGTCCAGAATGGAAGGGTTCTATAGAGGACActaatcttttcaaaatttggtACAGGATGTCAAATCCAAttcatctttaa
Protein Sequence: MDKVRIKKKEQCGKVKGIKKKVRMCYSRENLLLAVKEVLEGSSIASASKKYNVPEATIRARKNNKYADKKPGPASVLSASQEAELVEWVMESGRRGFPVTKPQLSDSVKQICDDSKKKTPFIDNRPGRTWYDSFVKRHPEVSQRLSENALLNRSRVSETSLRTWFQEVKKYFIKNNLLSLEPTRIFTCQEIRVPLNPTSLTALEFKNSDDLVENSEKENISVLITANAAGNLAPTFVLFAGNSLPKNAMVFAPSEFTLGYTENGWITGPEWKGSIEDTNLFKIWYRMSNPIHL

Sequence clustering based on sequence similarity using MMseqs2