Tsin005807.1
Basic Information
- Insect
- Torymus sinensis
- Gene Symbol
- -
- Assembly
- GCA_030522985.1
- Location
- JAPYZP010003021.1:8603-11400[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.1 2.5e+02 4.3 0.3 1 23 151 174 151 174 0.95 2 16 0.95 2.2e+02 4.5 1.2 1 23 208 231 208 231 0.92 3 16 0.02 4.5 9.8 1.0 2 23 306 328 305 328 0.96 4 16 0.0033 0.77 12.2 0.5 2 23 360 382 359 382 0.96 5 16 0.46 1.1e+02 5.5 0.9 2 23 452 474 451 474 0.92 6 16 6 1.4e+03 2.0 0.3 1 23 512 535 512 535 0.76 7 16 0.25 58 6.3 0.4 1 23 583 606 583 606 0.96 8 16 2.7 6.1e+02 3.1 1.6 1 23 618 640 618 640 0.74 9 16 0.023 5.2 9.6 2.1 1 23 653 676 653 676 0.98 10 16 0.025 5.7 9.4 3.1 1 23 689 712 689 712 0.95 11 16 2.6e-05 0.0059 18.8 1.9 1 23 718 741 718 741 0.95 12 16 0.00055 0.13 14.7 1.2 3 23 748 769 746 769 0.93 13 16 0.0042 0.97 11.9 1.9 1 23 774 797 774 797 0.97 14 16 2.4e-05 0.0056 18.9 0.6 2 23 804 825 803 825 0.97 15 16 4.8e-05 0.011 18.0 0.4 1 23 831 853 831 853 0.98 16 16 1.1e-06 0.00026 23.1 0.8 1 23 859 881 859 881 0.96
Sequence Information
- Coding Sequence
- ATGCACGCATTCCGTTCGAACTGCCCTGCAAAAGCCTATCAGCTCCGCACACGGCACCTCAAGGGGCGAAAAATCGACAGCGCTGCAAAGTCTACTGGGTCTACCGAAAAGACGGCGTCGACGATAACGGGCAGCGAGCAGCAGCGTCGCTTCGTCATCGAGCGCACGCTCATGAAGATTCCATCGCGACCGCTGAAGGTCGTGGGTCCTTCGAGCATGACTATAACGCGCACGAGTGCACCTCTGTCGCAATCATTCGACGAAGTGGTACAGGTGAAGAACGAGCCCGAGGAGGTTGACGACTTCGAGGAGGTTTTCATCGATGGCACCGAGACAGGCACCGGTGGTAGCACCAGTGCCGCGAGCATCAAGAGTACTAGTCCGTCGCCGAAGAGGAAAACCAAGACTACGACCGCAGCGGCGGCAAGTTCCAGTGACGAGGTCGTTGTGTACATGTGCAAGGCCTGCAAGATGTACTTCCCCATCAGGCGGATGCTCGAGATTCACAACTCTACGGTGCACAGCTCGATACAGAAGACAGcaacggcggtggcggcggcggccgaaCCGTCGTCACCAGCGAAGGTGCAGCGGGGCTACAAAATTACCAAGAACCGATCGTTCCAGTGCAATCACTGTACATTCAGCTCGCAAGGTTTGCCCGCGATGAATATACACCTGATGCGCAAGCATCCTGATGCGACGGCCAAAACAACGAGCCGAGCGAAGGTGGTGGTGGCAGCTGCTAGCGAACCAAAGCCCGAAGAGcccgacgaggacgacgagtcGTCTTGGCCGATGGAGGTGATCGAGGACGAGGAGAGCCTGGTGTGCCATCCGTCCCCGCGCAAGAAAGCCAGGATTGAAGttagagaggaagaggaggacgAAGAAGAGACCAGCGAAGAGTCGACGCGGTGTCCCTACTGCCAGTTCCAGGGCTACACGCGCATGGACCTCGAGCAGCACATAAAGCGCAAACATCGCAGCAAGTGGCTCGTCACCATCGCGAAGAAGGTCGCCGCCCTCGCCAAAAAGTCTTCGCCCTTCAAACAGCCGGCGCAGGTCCTTGAGATCACCTGCCCGCGCTGTCCCTACACCACCGACTCGCGCTCGACCATGAATCAGCACCTCATGCGCCTGCATAACAGCCGGATTTTGGACGAATCGGAGGACGATGAGGTCGAGcaagaggaggagaaggaagaggacgacgacgaggacggcgAGGAGATCGTCGAGGAGGACGTGACGAAAGTCGTCGACGAGACGGACATGTTCGAGGAGGTGGACGACGTCGGCGACGAGGATGAGGTGGAGAGGGAACGACCGGTAAAGCAGCGCTCCTATCAAAAGTGTCCCCACTGTCCATTCCGCGCGTTCGCCCCAGCCACCCTGAAGATGCACCTCAGCAGGCGTCACGCCATAGACCCGCTCGCTGTGCCCGGGGGTGAGGGCAACGCTCCGTCGGCCCGGAAGCGCGTCCTCCGCGGCAATCAGCGCAGGCTGGCGAGCACGATGCCGGTGACGGCGTACGCCTGCCACTACTGCACCTTCGCCGCCGCCACCGTTGGCAGCATCAACTCGCACTCGGCGCGGCTGCACTCGGGCCAGATTCAGCCGCTCCTCGAGATACCCGTCGTCGAGTTCGACTGCGACCAGTGCGACATCAAGACTCGCTGCCGCAAGACCATGCAGGGCCACTTGAAGCGCTGCCACCTGGCCCAGGCGAACTCGGACGGCATGTTCGTCTGCACCGTCTGCTCGTACGAGACGCTGTCGAGGATGGGCCTGCAGCGGCACATCTCCATGAAGCACAATAAGGCCAGGTGCGATCCCGCTATCGAGAGCTACAAGTGCGAGCATTGCGACTTCGCCTCGCCCAACGCCAAGATAATGGATTGGCACAGGCACCGGCACTCCGCGGCGCCGGCGCCCGATAGCACCGGGAGTTTCTACTCCTGCAACGATTGCGAGTTCTCCACCTGGACCAAGACTCAGCTCTTCTCGCATATCAAGCGCAAGCACAaggacggcgacgacgatgagCCGGTCGAGCACCTGTTCATCTGCCAGCAGTGCGAGTACACGACCAAGAACAAGCACTCGATGAAGGTCCACGTGATCAGGAAGCACACCAGCGATTTCAATCACGAGTGCGAGACCTGCGGCAAGAAATACAAGGTCAAGGCCGATCTGACTAACCACATCAGGTTCCAGCACAGGGAGCAGCCCATCATATGCGACGTGTGCGGCAAGACCTGCAGGAACAGTAACCTGCTATATCTGCATCAGAAGTTCGCGCATTACAAGCCGGACTTCGAGTGTCACATATGCCACAGGCGCATGGTCAGCCAGGCGAACCTTGACGAGCATATCCTGAAGCAGCACGAGCAGCGCCAGGACGTCGTGTGCGACGAGTGCGGCAAGACTTTCAAGAAAGTCGCCCGGCTCAAGATCCACAAGCGCACGCACACCGGCGTCAAGCCGTACACCTGCAAGATATGCCTGAGGGCGTTCGCGCGCAGGAACGGATTGAGGCAGCATCTGTTGATACACACGGGACAGAGGCCTTACTTGTGCGACATATGTGGCAAGAGCTTCACACAGAAGACGGGCTTGATCAGCCATAGAAAGAGCCATCCGGGCAGTCATCCTCCCTTGCCGAGGGTCACCATAGATCACGTGCTGTCGGATTTGTTGAATGAAGAAGAATGA
- Protein Sequence
- MHAFRSNCPAKAYQLRTRHLKGRKIDSAAKSTGSTEKTASTITGSEQQRRFVIERTLMKIPSRPLKVVGPSSMTITRTSAPLSQSFDEVVQVKNEPEEVDDFEEVFIDGTETGTGGSTSAASIKSTSPSPKRKTKTTTAAAASSSDEVVVYMCKACKMYFPIRRMLEIHNSTVHSSIQKTATAVAAAAEPSSPAKVQRGYKITKNRSFQCNHCTFSSQGLPAMNIHLMRKHPDATAKTTSRAKVVVAAASEPKPEEPDEDDESSWPMEVIEDEESLVCHPSPRKKARIEVREEEEDEEETSEESTRCPYCQFQGYTRMDLEQHIKRKHRSKWLVTIAKKVAALAKKSSPFKQPAQVLEITCPRCPYTTDSRSTMNQHLMRLHNSRILDESEDDEVEQEEEKEEDDDEDGEEIVEEDVTKVVDETDMFEEVDDVGDEDEVERERPVKQRSYQKCPHCPFRAFAPATLKMHLSRRHAIDPLAVPGGEGNAPSARKRVLRGNQRRLASTMPVTAYACHYCTFAAATVGSINSHSARLHSGQIQPLLEIPVVEFDCDQCDIKTRCRKTMQGHLKRCHLAQANSDGMFVCTVCSYETLSRMGLQRHISMKHNKARCDPAIESYKCEHCDFASPNAKIMDWHRHRHSAAPAPDSTGSFYSCNDCEFSTWTKTQLFSHIKRKHKDGDDDEPVEHLFICQQCEYTTKNKHSMKVHVIRKHTSDFNHECETCGKKYKVKADLTNHIRFQHREQPIICDVCGKTCRNSNLLYLHQKFAHYKPDFECHICHRRMVSQANLDEHILKQHEQRQDVVCDECGKTFKKVARLKIHKRTHTGVKPYTCKICLRAFARRNGLRQHLLIHTGQRPYLCDICGKSFTQKTGLISHRKSHPGSHPPLPRVTIDHVLSDLLNEEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -