Tsin028039.1
Basic Information
- Insect
- Torymus sinensis
- Gene Symbol
- -
- Assembly
- GCA_030522985.1
- Location
- JAPYZP010030297.1:399-1802[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.4e-08 0.0001 23.8 0.0 4 34 10 39 8 44 0.90 2 2 8.7 1e+04 -1.8 0.0 30 41 344 355 344 357 0.82
Sequence Information
- Coding Sequence
- atgcaaaaacttttaaaggtgtctgacccccttaagaaagCATTAGCTGCTGCTGACAATGGACTGACCTTACGGAACGCTGCTACACTTTTTGGAGTCCCAAAATCAACGCTAAAtgcaaaaataaactatcaacTGCCAATTGATTGTGCTAAAGGTGCACCAACTATTTTGAGTGCTAATGAAGAATGTGAAATAGTTGATTGGATTCTTTACTCTGCAGAAAGGGGATTTCCGGTCACAAAAAGTCATCTACTGGATTGTGttcgaaaattcataacttcAGAGAAGCGAAAAATCCCTTTCAAGAACAGTAGACCAGGCAAACATTGGTATAATGGTTTCATGAAACGGCACATAAATTTCAGCCAACAACTTGCACAAAACCTTACCTGGTCTAGAGCTTCAGTTTCTGTAGAAGACCTCAAGAAATGGTTTTctcttgtaaaaaattatttacaagatAAAGATCTACTAAATTTAGAATGTGAAAGGATTTTTAATCTGGATGAATCCGCTTTTATGTTGGTGCCTAAAGATAAGCCAGTGATTACCCGTAAAGGGGCTAAATCTGTTTATCAAATTGTTGGAGGCAATGAAAAGGCTTGCTTAACTGTACTTTTTACTGCTGCTGCTTCAGGCCGGCTGGCTCCTCCGATGGTATTATTTGATTTGAAGACTATCCGAAAGAAAAGTGTTGTGAACTGTATACCAAAAGGCTGGGGCATTGGACACAGTGACAGAGGTTGGATGACATCCGAaacattttataATGTGGCTCTTTTCCGCCCGGTGAAAGACGCCTACAAAAATACTCTGAGAATATGGAAAATAGATAATAACATAGttgatgttaaaaaatatacgttttcaGGAATTCTCAAACAGGCTTTAGATTCCATCGATCTGTCAGACACAATCAAGAATGGATTTAGAGCTTGTGGGTTATGCTCATTCGACTCGAGTGCagtaaattatgatattttaaataaaaagaaaaagaaaagcaataCTTCATCTTCATCCGAGCATTCAACTCTAGAAAATGTAAACAGTACAAGTAATAATCTTCACCTATTACATTTATTCGAGACAAGCGTTATTAGCCCTAAGATTTTGGAAGAATTTATGACTTATGAATCTCGAGATTTGTGGGAAGGTGAAGAAAGTCAAAAAGGACTGTTTGAATACTGGAAAGAGTTGAAGAGACTTTGTGGTACTTAG
- Protein Sequence
- MQKLLKVSDPLKKALAAADNGLTLRNAATLFGVPKSTLNAKINYQLPIDCAKGAPTILSANEECEIVDWILYSAERGFPVTKSHLLDCVRKFITSEKRKIPFKNSRPGKHWYNGFMKRHINFSQQLAQNLTWSRASVSVEDLKKWFSLVKNYLQDKDLLNLECERIFNLDESAFMLVPKDKPVITRKGAKSVYQIVGGNEKACLTVLFTAAASGRLAPPMVLFDLKTIRKKSVVNCIPKGWGIGHSDRGWMTSETFYNVALFRPVKDAYKNTLRIWKIDNNIVDVKKYTFSGILKQALDSIDLSDTIKNGFRACGLCSFDSSAVNYDILNKKKKKSNTSSSSEHSTLENVNSTSNNLHLLHLFETSVISPKILEEFMTYESRDLWEGEESQKGLFEYWKELKRLCGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -