Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.0012 1.4 10.6 0.0 26 39 2 16 1 20 0.82

2 4 7.8e-12 9.3e-09 36.7 0.0 2 39 32 69 31 72 0.94

3 4 1e-18 1.2e-15 58.8 0.0 2 45 87 131 86 131 0.97

4 4 3.4e-18 4e-15 57.1 0.0 1 42 138 180 138 181 0.97

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.0012	1.4	10.6	26	39	2	16	1	20	0.82
2	4	7.8e-12	9.3e-09	36.7	2	39	32	69	31	72	0.94
3	4	1e-18	1.2e-15	58.8	2	45	87	131	86	131	0.97
4	4	3.4e-18	4e-15	57.1	1	42	138	180	138	181	0.97

Coding Sequence: ACATTCGGCATCCCCTCGACGACGCTCTGGCAGCGCGCGCACCGCCTCGGCATCGACACGCCGAAGAAGGACGGCCCGACGAAATCCTGGAGCGACGAGAGCCTGAACAACGCGTTGGACGCGTTGCGCACCGGCACCATATCCGCGAACAAGGCCTCAAAGGCCTTCGGCATACCCTCGAGCACGCTCTACAAGATTGCGAGGCGAGAGGGCATCAGATTAGCGGCCCCCTTCAACGCGAGCCCGACGACATGGTCGCCCGCCGATCTCGATCGCGCCCTCGAGGCGATAAGGTCCGGACAGACGTCCGTGCAGAGGGCCTCGACGGAATTTGGCATACCCACCGGGACGCTGTACGGGAGATGCAAGAGGGAAGGCATCGAGCTCAGTCGGAGCAATCCCACGCCGTGGAGCGAGGACGCCATGACGGAGGCGCTCGAGTCTGTCAGATTGGGCCACATGAGCATAAACCAGGCGGCGATCCACTACAACCTGCCGTACTCCTCGCTCTACGGGCGCTTCAAGCGCGGCAAGTACGAAGAGCCGGTGGTGAACGAGATGTCGCAGGACGGCTCGGTACAGCACTTCCACCAGAGTCCGACGCCCAACAACCACTCGTCCTcgctgcccgaccagatgccctACCAGGGCAGCTGA
Protein Sequence: TFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALESVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNEMSQDGSVQHFHQSPTPNNHSSSLPDQMPYQGS

Sequence clustering based on sequence similarity using MMseqs2