Basic Information

Gene Symbol
JARID2
Assembly
GCA_030522985.1
Location
JAPYZP010000531.1:30948-43310[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8.9e-23 7.6e-19 69.8 0.0 6 89 1583 1664 1579 1664 0.94

Sequence Information

Coding Sequence
ATGGTTTTAAGTCGAAATGACAAGaggaaaaggaaagaaggagacCTTGTGGATCTCATGGATCCACTTGCAGAACCTCCAAAAAGAACTAAAATACATGCACAAAGAAAGTTTGCACAAGGAGTAGCCACTCCTGTATATAGTCCTGTAACAACACCCATCAAAGagcaaaaagaacaaaaaacaaAGCCTGCAGTATTCACAGAGTTAATTACGCACAAACGACCTAATACTGAAGACTTCTTAACATTCCTTTGCTTCCGAgGTACATCAATACTACCCCCCAGCCTCAATTTCTTtagtgataataataaaaaagacaaaCCACAAGATGCAGTTGGATCAGCACCATCTACAAATGGCTATGCAAAGACAAACGGCACGAGCGGTAAGTCCGCGCCGTCATCGAAAGCTGATCATCAACTCAATGGTACTGCTACACAAAAAGCAGCATCCAAGGAGAAGACTGCCAATGTTCCCAAAAAACAAACACCAACTGCAGTTCCTAAGACAATCAAGCTCAAAACTACAACCACGGCTATCCAAGCCTTGAAAAAGAAGTACCAGGAGCAGAGGCTGGCCAAGCAACGACTGAAGAAGTTCAAGCCATCTTGCATGAAAACACGCTCGGGTGCGACTGTTGTTGAGCGAGCGCCGGTGGAGAAGCCCGTGGTGACCAAGGTGGCGGCGCCCAAGAAAATCTTGTCTCGCATCGAAAGCAGGAGGCATGGTCTTCGAAGTACAGGCATGCCTGAAAGCGAGAAGAAGAGCTTGCCACTGAAGACCATCAGAAAACCTCTGGTAGCGACGAAACTGAAGAAGAAGGCTGTGGCAGCAAAAGACGATACATCGAGTGTCGACTCGTTCCCCGTAAAGAGCAATGTCAAGAAACCCGCGCCGAAAGTCGCGTCGAGTAAGCTGATTCAGAAGAAGATGCTCGAcaacaagaagaaaaagaaaatcgcgGCAAGGCGCGTGACGCGTTCGAGGGCCGACATCCCAGCCGCCAGATCGCCCACGCCGACGAATCCCACAAGACGGCCAACGCGAAAGACGAAGGAGGCCGCGGCCGTGTACATGGAAATACTCGGCAGAAAACTCGTCAGTCCCGAGCTGGAGAACGAGGACAATCTGTCGTTGGATAGCTTCCCGGAGCTGCCGAATGCGAGGAAAATCGCTCAAACGGAGAACGAGATCAAGGCCAAGGTGAAATCGCTGAAAGCCGCCGCAACAATTAACGCTGCCACCGCGGCTAtgaaggagaaagagaagaaagtaaCGAGTAGTGCGAGCAATGGAAGTACGAAACCCGTTAAACGAAAAGTTGTTAAGCAGCCTTTACCCCTGAAGAATAAGAGACTAGTCAAAGTGCAAAAGTATTGCGAATTGAATAGTGATGAAGAATCAATAAGTTCAAAAGAATCTATTGAAGAAGCAAAGGCAGTTGCCACAAGGCGATCTGCTCCAATAGGCGTTCCTAAAGTCAAAAAGGCAGAAAATCGTACGTTGAGATCAAGTCGAAGTCTAACGTCAAAAAAGAGCTGTTCTAAGACGAATGAAACAGAGCAAACGTCTATTAGTGAACTCACAAAATCGACCAAAAATACGGAGTCTCAGAATACTTCAAAGAGTAATAAGGAAACTAATGGTGCTATTACCAAGGAGTTGGGTAAGGAAACTCCGAAAGAAAAGATGACACCAGCCGCCAAACGTAAGCGCGACTCTATCGCTAATGATAAGGACAAGGACAAGGATAAGGATAAAGACAAGGATAAGGATAAAGACAAAGATAAGGATAAGGATAAAGacaaggagaaagagaaagaaagcagCACGGCGAAGCAGAAGCCCGAAGCAGTGAAGAACAAGAGCAAAACCATCGATGCCGCTGTTGAATCTGACGAAGAAAGTCTCTTCAACAAGATGAAGAAGAGGAAAGAGGCCGAAAAGGAAGAGTGCAACCAGGAACCGTTGGCGAAAAAGACGACGGAACCAAAAACTACCAAAGCCACACCAGTAACGACGACTTCTACAAAATCTACAACGGTGGAGACATTGAAGAGTCAAGCCGAGGCGCCGACGACGAAGATGTCCGACGACGAGGAATCCTTCCGCGGTTTCACGAAGAAAGCTATCTCGAAAGTGGCGAACACATGCCAGTCGCTGGTGAAGGCGAGCGGTTTATTGGACGATATCGACAGCAAGGCAAATGTTTTGTCGAGCTCGGCGAGCATCAAAGACGTGAAGAAGGTCGAAATCAAAATCGCGACGGGGACGTTCCCGTGCAAGGGTATCGTCGAGCAGATGCTGAGCAGTGGCGGCGCGACTAGCTCCGCGGCCAATGCCTCGGTCAAACTGGAGCCCGACTTCGGCGACTTGAAGCCGCCTAAACCATCGAAGGTATCCACCTCGGTCATCTCGAGCCTAACGCCAGCCTCCGGGCTGCACAGCATCATCGACATGCCGAAGGCGATGCCTCACCACGGGCGCAAGGAGCGCGTCAACATGTCAACTGAGCAGATCGAGAAGTGGCTGAACGAGAGCTCGCTGGCCAAGGAGGAGAGCAAGGTCGAGATGGAGAGCGTAGCGAGCTTCAAGTACGACCTACCCCTCGACAAACCCATCGTGAAGTCATCCCTCGACAGCGTAATCAGTACCAGCAGTGCCCTCGCCACCACCCCGACTATCAGCACGAGTGCACCGCCAACGACGCCGGCTgtaccaccaccgccgccgccaacAGTAACAGCGTCGTCGCTGCTACCGATTCACGGCCACCTGTCGATCTCGCCGAAAATCCAACACCTCGTGCGTCCGGTGAACGTGACCCTGTCGAAGCTGTCGGACCGGGTGAAGCGCGCCCCGCTGGCTCAGCCCTTCAGCGGTGGCGCGACTCACAAGATGCCCTCGGTTTTTCCCGCGGGCAGCCACATATCGCCGGTGAAGCCGCAGCTGCCCGTCGCGTCGAAGGCGAAGGCGACGACGGGCGATGCAGCTACCAGCGCCAGCAACAGGGACAAACCCAAGGACAGCCTGCCGCAGCCGCAACCACAGCAGCAAAAACCACAGCTGCAACCACAAccacaacagcagcaacagcagcagcagcagcagtcgtccGCCGCGGTGCCCAGCCGAAAGATGAGCAAGGACTCGTCGTGCGGAGACGATGTCGCGGACAGCGACGCCGTGTCCAAGTCGGACGCGGCCTCGTCCGCGGGCGGCGAGTCGTCGCACCAGCCGGAGAAGAAATCGTCGAGCGGCAGTCCCGAGAAGAAGGTTTTTTTTCACCAGCGCGCCAAGCAGCCCTTTCTCCACAAGGAGCGCGTCGGCAACCtcaggtcgtcgtcgtcgtcggcggcggcaggGGCAGGGGCAGCGGCAGCGGCCTCGTCGACAGCGCCGCCGGTGACGACGAGCCAGTCGGCCGGCAACGCCGCCTTCTCGCCGGAGAACGAGAGCAGCGTCTACGCGTTCGAGAGCGAGCTCGAGGCGCCCGTGAGCACGCCCTTTCGGCGCAGGGcgcgcgagagcagcagcagcggcagcaacaacGTCGCTAAAGATCACAGTCGACTGGCCGgAACTACTGACAAAGAGAAGCGATCGACAGCGCACTCGACTGATAGCGAAGCGAAAAGCAAAAgcgaggaagcaaaaaatgtGACCGAGCCTTTAAACTCGCCAGAGGAAGCTcggaaggaagaagaaaaatcgTCCCCGCTGTTGGAAAGGACAACGCCAAAAAACTTCGAGCTTCCGAAAAACTTCGCAGACTTAACAAACATTCAGGTGTTACCACTAGACAAGCTAACAACAAGCTGGAGCAATGTAAACTGTAGCGCCTCGATAGCCGTGCAGGTGAACCTGGACGAGCAGAAGCAGCAGGATTTGAAGCGACAGCAGTCATCGATAGCGGAGGGAAGCAATGCGGAGTCGAACGCTCAGAAGAGCACAGAGATCTCCACGCAGACGGACTCGAACAcggacaacgacgacgacgacagtgGCCAGTTGTTCTATATTCCCCTGCAAGCGGTCACTCGCAATGCCTCCGCTCAAGGTGGCCAGCAGCTCATCCAGGGTGTGGCCGTGAAACTCGGTACCGAGGGCCCAACTGGACCCAATCAGCGCGTACTCCTCAAAGCGAAGCTGGTGACGAAGCCGCCGATATCAGTGGCGCGGTGTCCGCCTATCGGCACGGTGCAGCCGACCGCTCGCACGCCTCAGAACACCAGTGCTGATCAAACGGATCTGCCCTCGACCTCGACTTTCATTACGGCAGATGCGAGCTTCAAGTTTCCGATGCccgaggagaaggtggatagagGAATTGGGAGTAAAGAAATTCATAAAACGCCAAGTTCggaaaaagttatgaaatctccAAAGAGCAGAGAAAGAAAGACATCCACGGATGGAGGAAAGGGTGGGAAGAGAGGAAAAGCAAAATCATTGGAAATTCATACGCCTGTAAATAAAACATCGTTTCCAAATACGAAGGACTCTAAAGAAGAGCCGCGTCTGGTAGAAGCTCCCACGTTTCGGCCGTCAGAAAAAGACTTCCAAGATCCATTGGAATACATCGACAAAATACGTCCGATCGCAGAAAAGTTCGGGATTTGCAGAGTGATACCTCCTTCAAACTTCAAGcCGGAATGCAAAGTATCGGACGATATGAGATTTACAGCTTACAATCATTACGTTCACCGTATGCTCCATCGATGGGGCCCGAACGTAAAAGAAATGATGGCTATTAGAAAGTATTTAGCCACTCAGAGCATTACTTTAACGCAACCGCCATGGATTGGTGGTATGGAAGTTGATCTGCCGCATTTGTATCAAACTGTACAAAACTTAGGTGGATTAAAAGAggtaattgaaaagaaaaaatggcaaaaagtagCAGATGGTATGAAGATACCGAAATCGGCACAAGACCGAGTTACTAAATTAGATGATATCTATTGCAAATATTTACTTCCTTATGATACCCTATCACAAGatGAAAGAGATAAACTATTTAAAGATGTTGAAGCAGATTGGGCAAGGCGAGAAAGAAGAGACAGGCAAGAAGTACAATCTAATGATGATGAGGACGATGACGAGGACAGTTCCGAAGAAATAGAAGAATGTATCGTAAAAGGTCGCAATATGCCCTTGAACGCTTTCTACAGGATTGCCCGAAACACGCTGCGCATGTGGTTCGGTGAGAATCAGCGTTCGACAGGTGAAATGGAAGGCGCACCGGCCGAGGACGTGGAGACTGCATTTTGGAAACACGTCGCCGAGAAGAAACGTCACGTGTGCGTGCATGCCGCGAGTATCGACACTTGCGGCCGTGGCTTTGGCTTCTCCGTCGCCAAGAACAGTCCCTTCGGCAGGCATCCTTGGAATCTGAAAATTCTTACGAACAACGCTGGATCTGTGCTCAGAGCACTTGGTCCGCAGATGGGTGTGACGGTACCGACCTTACACGTGGGCATGCTGTTCAGCGCCTGTTGCTGGTACCGTGATCCCCACGGTCTGCCCTGGATCGAGTACTTGCACACGGGAGCGAAGAAGATCTGGTACGGTATACCCGATGATCAGAGCAGCACGTTACGCCAGGCTCTGACGAAGATGTTCCCTCGCTATTGCAAGAACAAGAAGATCTGGCTGCCATCGGATACGGCCATGGTGCCTCCCGACATGTTAGTCAGTAACGGTGTGCCCCTCTGTCAAACCGTGCAGGAACCTGGCCAGTTTATCATTGTCTTTCCTAAAGCCTTTACCTCGAGCATTTGCACGGGATATGTCGTGTCGGAGAGCGTCTACTTCGCACAGCCCTCGTGGCTAGAAACCGCTGAACAAGTGTTCCAAgattTGCATGATAGTTGTGAgccttcaattttttcatttgaaagaCTGTTATTTAGCATAATTAATGACTCTAGATCTCATATTGACATTCTTAAACAGattttaCCAACTGTTATTAAAGTTTGTGATAAGGAAATAGAAAATCGccgaaaattaaaagaaataggaCTCGCGAACATTGAAAAATTACCACTGCcggaaaataataagaaaaagggTAAAAACGTAAAAGAAGAAGAGAGCGATTATGAATGTGATACTTGTCGAGCAAACTTATTTGTTTCTTTAGTGAGCAATCCTACAGATGAGAGCATTTTTTGCCTGACTCACGCCATaccatatatagaaaaaaagaagcagGTCTTAAAAAATTGCAAGCTTATGTATACGTATAGTGAGagtGAATTAAACGATCTTATTCGCAAACTAAAGGACAGGATCGAAGCCAAATCTAAAAAGACTAATCAAACAAAAGCTAAATAG
Protein Sequence
MVLSRNDKRKRKEGDLVDLMDPLAEPPKRTKIHAQRKFAQGVATPVYSPVTTPIKEQKEQKTKPAVFTELITHKRPNTEDFLTFLCFRGTSILPPSLNFFSDNNKKDKPQDAVGSAPSTNGYAKTNGTSGKSAPSSKADHQLNGTATQKAASKEKTANVPKKQTPTAVPKTIKLKTTTTAIQALKKKYQEQRLAKQRLKKFKPSCMKTRSGATVVERAPVEKPVVTKVAAPKKILSRIESRRHGLRSTGMPESEKKSLPLKTIRKPLVATKLKKKAVAAKDDTSSVDSFPVKSNVKKPAPKVASSKLIQKKMLDNKKKKKIAARRVTRSRADIPAARSPTPTNPTRRPTRKTKEAAAVYMEILGRKLVSPELENEDNLSLDSFPELPNARKIAQTENEIKAKVKSLKAAATINAATAAMKEKEKKVTSSASNGSTKPVKRKVVKQPLPLKNKRLVKVQKYCELNSDEESISSKESIEEAKAVATRRSAPIGVPKVKKAENRTLRSSRSLTSKKSCSKTNETEQTSISELTKSTKNTESQNTSKSNKETNGAITKELGKETPKEKMTPAAKRKRDSIANDKDKDKDKDKDKDKDKDKDKDKDKDKEKEKESSTAKQKPEAVKNKSKTIDAAVESDEESLFNKMKKRKEAEKEECNQEPLAKKTTEPKTTKATPVTTTSTKSTTVETLKSQAEAPTTKMSDDEESFRGFTKKAISKVANTCQSLVKASGLLDDIDSKANVLSSSASIKDVKKVEIKIATGTFPCKGIVEQMLSSGGATSSAANASVKLEPDFGDLKPPKPSKVSTSVISSLTPASGLHSIIDMPKAMPHHGRKERVNMSTEQIEKWLNESSLAKEESKVEMESVASFKYDLPLDKPIVKSSLDSVISTSSALATTPTISTSAPPTTPAVPPPPPPTVTASSLLPIHGHLSISPKIQHLVRPVNVTLSKLSDRVKRAPLAQPFSGGATHKMPSVFPAGSHISPVKPQLPVASKAKATTGDAATSASNRDKPKDSLPQPQPQQQKPQLQPQPQQQQQQQQQQSSAAVPSRKMSKDSSCGDDVADSDAVSKSDAASSAGGESSHQPEKKSSSGSPEKKVFFHQRAKQPFLHKERVGNLRSSSSSAAAGAGAAAAASSTAPPVTTSQSAGNAAFSPENESSVYAFESELEAPVSTPFRRRARESSSSGSNNVAKDHSRLAGTTDKEKRSTAHSTDSEAKSKSEEAKNVTEPLNSPEEARKEEEKSSPLLERTTPKNFELPKNFADLTNIQVLPLDKLTTSWSNVNCSASIAVQVNLDEQKQQDLKRQQSSIAEGSNAESNAQKSTEISTQTDSNTDNDDDDSGQLFYIPLQAVTRNASAQGGQQLIQGVAVKLGTEGPTGPNQRVLLKAKLVTKPPISVARCPPIGTVQPTARTPQNTSADQTDLPSTSTFITADASFKFPMPEEKVDRGIGSKEIHKTPSSEKVMKSPKSRERKTSTDGGKGGKRGKAKSLEIHTPVNKTSFPNTKDSKEEPRLVEAPTFRPSEKDFQDPLEYIDKIRPIAEKFGICRVIPPSNFKPECKVSDDMRFTAYNHYVHRMLHRWGPNVKEMMAIRKYLATQSITLTQPPWIGGMEVDLPHLYQTVQNLGGLKEVIEKKKWQKVADGMKIPKSAQDRVTKLDDIYCKYLLPYDTLSQDERDKLFKDVEADWARRERRDRQEVQSNDDEDDDEDSSEEIEECIVKGRNMPLNAFYRIARNTLRMWFGENQRSTGEMEGAPAEDVETAFWKHVAEKKRHVCVHAASIDTCGRGFGFSVAKNSPFGRHPWNLKILTNNAGSVLRALGPQMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDDQSSTLRQALTKMFPRYCKNKKIWLPSDTAMVPPDMLVSNGVPLCQTVQEPGQFIIVFPKAFTSSICTGYVVSESVYFAQPSWLETAEQVFQDLHDSCEPSIFSFERLLFSIINDSRSHIDILKQILPTVIKVCDKEIENRRKLKEIGLANIEKLPLPENNKKKGKNVKEEESDYECDTCRANLFVSLVSNPTDESIFCLTHAIPYIEKKKQVLKNCKLMYTYSESELNDLIRKLKDRIEAKSKKTNQTKAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01468614; iTF_01469447;
90% Identity
iTF_01468614;
80% Identity
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