Tger027072.1
Basic Information
- Insect
- Torymus geranii
- Gene Symbol
- stc
- Assembly
- GCA_900474355.1
- Location
- UCWB01006765.1:7364-9411[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 1.7e-05 0.18 12.7 9.5 4 18 3 17 2 18 0.94 2 8 0.89 9.8e+03 -2.4 2.0 5 10 47 52 47 52 0.93 3 8 0.015 1.6e+02 3.3 12.2 1 11 58 68 58 80 0.88 4 8 6.2e-11 6.8e-07 30.0 13.6 1 19 85 103 85 103 0.98 5 8 0.43 4.7e+03 -1.4 0.9 6 10 132 136 131 137 0.87 6 8 0.17 1.9e+03 -0.1 5.5 10 19 150 160 148 160 0.84 7 8 3.3e-07 0.0037 18.1 13.4 1 16 196 211 196 222 0.84 8 8 5.3e-05 0.58 11.1 15.2 1 19 228 247 228 247 0.97
Sequence Information
- Coding Sequence
- CAACCTCATATCTGCCAAGCAAACTGCCACGAAGGTGAGTGTCCTGATTGTGAATCAGTTACTAAAGTTAAGTGTCGCTGTGGTCATATGGACAAGGAAATCCCATGCATAGAACTGACAACTAAGGCTGATGACGCTCGCTGCGAGAAAAAGTGTACGAAGAAACGTTCCTGTGGCAAGCATAAATGTAATCAAATGTGTTGCATTGACATCGAACACATATGCCCACTTCCATGCTCAAAGACTTTAAGTTGTGGTCGGCACAAATGTGAGCAAACTTGTCACAGAGGTAGGTGCCAACCGTGCTGGCGTAGCAGCTTTGAGGAGCTCTACTGCGAGTGCGGCGCCGCGGTTATCTACCCGCCGGTACCGTGCGGCACGCGCCGCCCTGCCTGTGAGAAACCATGTACACGCGAGCACCCTTGTGACCACGAGGTCCTGCATAACTGCCACAGTGATGCCAATTGTCCACCCTGCACCGTTCTCACTCAGAAGTGGTGTTACGGCGAGCATGAGCTACGCAAAGCCGTGCCCTGCTACGTAAATGAAGTGTCCTGCGGTCTGCGTTGCGGTAAGCCCATCTCCTGTGGCCGGCACAAATGCATCCAGTCGTGCCACCCGGGTGCCTGTGAGAAGCCTGGCCAAGTTTGCTCACAGCCGTGCACCGTGCCACGAGAGCTGTGCGGACACATTTGCAGTGCGCCGTGCCATGGGGGCAAGTGCCCCGACACACCCTGCAAGGAGATGGTCAAGGTGACATGTCAATGTGGAAATCGAACGCAGTCTCGTGTATGCGCGGAGAACGCCCGAGATTATCAAAGAATAGCTAGCGGAATTTTAGCCAGTAAAATGGCAGACATGCAACTTGGGCATTCGGTCGATCTGGAAGAGGTTTTTGGTCAAGGCGCTAAGAAACAAAATCAGCTGAAAACTCTCGAGTGCAACGAAGATTGCAGGATAATTGAGAGAAATCGCCGACTAACACTTGGTCTACAGATAGCTAATCCAGACTTGAGTGGCAAGCTCCTGCCGAAGTACAGCGAGCACATGAAGATGTGGGGCAAAAAGGATCCTGCATTTTGTCAAATGGTGCACGACAAGCTCACTGAACTCGTGCAGCTGGCTAAAATATCGAAGCAAAAGTCACGAAGTTATTCATTTGAAAGTATGAATCGAGATAAGAGGCAATTTCTACACGAATCGTGCGAGCATTTCGGCTGCGAGAGTCAGGCGTATGATCAAGAACCCAAACGCAACGTTGTTGCGACAGCCGTAAAAGATAAAtGCTGGTTACCAAGTTACAGTTTGTTGGAATTATTGCAAAGAGAAAATGGTCAACGAAAGGTACCAGGACCAATGTTAAATAAGTCGAAAGTAGCAACAGAAAGGAATATGGACAGTCTACAATTAAATACAAAGAAGAGTCTGAAACCTCTGCCTACGACCTCGGCTTCGCCATCGAGGTCGCCAGAACCTGAAATAGACTACTTCAATTACAAGGGCTGA
- Protein Sequence
- QPHICQANCHEGECPDCESVTKVKCRCGHMDKEIPCIELTTKADDARCEKKCTKKRSCGKHKCNQMCCIDIEHICPLPCSKTLSCGRHKCEQTCHRGRCQPCWRSSFEELYCECGAAVIYPPVPCGTRRPACEKPCTREHPCDHEVLHNCHSDANCPPCTVLTQKWCYGEHELRKAVPCYVNEVSCGLRCGKPISCGRHKCIQSCHPGACEKPGQVCSQPCTVPRELCGHICSAPCHGGKCPDTPCKEMVKVTCQCGNRTQSRVCAENARDYQRIASGILASKMADMQLGHSVDLEEVFGQGAKKQNQLKTLECNEDCRIIERNRRLTLGLQIANPDLSGKLLPKYSEHMKMWGKKDPAFCQMVHDKLTELVQLAKISKQKSRSYSFESMNRDKRQFLHESCEHFGCESQAYDQEPKRNVVATAVKDKCWLPSYSLLELLQRENGQRKVPGPMLNKSKVATERNMDSLQLNTKKSLKPLPTTSASPSRSPEPEIDYFNYKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -