Tger013107.1
Basic Information
- Insect
- Torymus geranii
- Gene Symbol
- -
- Assembly
- GCA_900474355.1
- Location
- UCWB01018183.1:1025-4798[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0017 0.23 12.9 3.5 2 23 454 477 453 477 0.97 2 10 0.069 8.9 7.8 2.1 1 23 483 507 483 507 0.98 3 10 0.0002 0.026 15.8 0.1 1 23 513 537 513 537 0.97 4 10 0.0094 1.2 10.6 0.3 3 23 545 567 544 567 0.93 5 10 0.012 1.5 10.2 2.9 1 21 574 596 574 598 0.95 6 10 1.5e-05 0.0019 19.4 0.6 2 23 606 629 605 629 0.94 7 10 1.3e-05 0.0016 19.6 2.2 1 23 635 659 635 659 0.96 8 10 7.6e-05 0.0098 17.1 1.3 1 23 665 689 665 689 0.97 9 10 0.00052 0.067 14.5 2.0 1 23 695 717 695 717 0.98 10 10 0.00046 0.059 14.7 1.2 1 23 807 831 807 831 0.94
Sequence Information
- Coding Sequence
- ATGTCGAGGCTCGCGCAAAAGCAACAGCGGCCGTTACCACGGTTATTCCGACGACACGCGGTTCTCCATCACCACCAGCAGCAACAGGGCCCGAATGAAAATTGCGCCTTTGCGGCTACAAGAAACGTGCTCTCTGCTACATGCGAAGCGGAAGACGAAGACGACCACGAGGCGGCCCTCGACGAGGTGCTTATCGCCCTTCAAAATGCAACCGCCTCGCATAACGATAAGCATCAATTACAAAGAAACAAAACCAAAACCATTGAAGATATAAAGAGATGGCTGCAAAATACTAGTGAATCTGCCTCGTACATTGGAATACATAGAAGAGATAACTCACAATCAAGTTTTGAAAGGTATCTGAATAAACAATTGTCTGAAGTACTTTTTGATAAAGATTATGCTACTGCAGATGTCAATGGAAAAACTGccaaagcaaatatttattatgacttTCTTAATGagtttcataatgaaaaattttctatatctcAAAAGGAGGAGGAGATACTATTATCTGATTTACAATTGGATAGCTTAGTGGAATTACCATGTGTTGAagataatataatcttaaataatgaaattttaaaaccacCCAATGCAACGTCATATAATACTGTAAATGTCAATACTAAAGACTTAATCATAAGATTACAAGAAACTATCGATAggtttagtaataataatgataaaattgttaatgaTTTACAAGTACAAAATGGTTTACAAAAAGAGAAACATAGATATGGTTTAAGGAATAGTACTAGTAATATTAATCCCATACAAGAGAATTTTTATAACACCTGTCTTCTAAGAAGCATTGAAGATGTTACTATTCACAATCTATCATTGGAGAAATCTGATGCAAATCTAACAAATTATGGTAcaaatattgataatgaaaatacaattaCCAAAAGAATACCTAAAAAGTCAAATTTCCAGCCTACACAAATGGTAACAAGGAGTTCTCTTAAAAAGAATCAGAACATAAATACAAGCCCAAAATTAGCTACTTCAAAATCTAAATTTCAACcaagtataattaaacaaaatagaaaatattcaagTACAGAGCACTCGTACTGTAGAGAACAAAATAGTGAATCATTTTCTAATTATGAATTACGAAAATGTAGAAGcagaaataattcaattatttctgaTTCCCATGATGATCAtattgatgatgatgaggaagatgatgatgaaaaagaaaaagacccAGATTTTAATATCAGAAATCCTTTATACTACACTCATCAAGAGAAAGAAATCTCAAATGCTTTAGAAGAAGTAGGCATAACAGATAGAATGTTAAAACATATTAGATTAGCAGATGACACAAAAGTATGGCAATGTCATCAAGATGATTGTAATCGTCAATTTGTAAAACCATGTAGTCTCAAATCGCATTTGTTAACACATTTTGGAATTAAGCCATTTaagtGTGATCATGATGGATGTTCTTGGGCATTTTATACAGAATTCAGACTTAAACTTCACAAGGAGACACATTTAAAGAAGAAAGACTATGTATGTCCAGTACCTGGATGTAAGCGAAGATTCACTACAATCTATAATTTAGCAAGTCATGAGAAATTACATACACGGCCAAACAGGGTAATTTGTCAAGTTTCTGGTTGCACTGCAAGGTTTCAAACAAAGCGAGCTCTTGACGCACATATGAAGACACACGATGAAAGCCTTGCCCCTTATGTCTGTAACTTTGAGGGATGCGGTAAGCGGTATTACAGTAGTAATGCGTTTATGTCTCACCAACGTTGTCACAGATACTCGGATTTAGATATCACTTGCTCGTGGCCAGGCTGTGGCAAAACATTTGATCAGCCTTGTCGATTGAAAGCGCATATGCGCTCACACACGGGCCTTAAACCTTATGCTTGTACATTTAAGGGTTGTAAATGGGCTTTTTCAACTTCTAGCAAACTTAAGAGACATCAAAAAAAGCATACTAATGATCGGAAATTTGTATGTGATGTGGAGGATTGTAAAAAAGCATTCATGAGGTCTGAGCATCTCAAAGAGCACAAACTCACACATGCTGGGGAGAGATTTTTTCAGTGTCATATATGTTCATCTGCATTTTCAGCAAAAAGCAGTCTTTATGTTCACGTTAAAAAGCACTCGAACAAGAACTTTGTTAGCAGACCACGTCAtcaacagaaaaagaaaaaaactgtagaaaagaAAACTGTTggtaagaaaaaagatattcattGTCCTAGAGTACAACCTATTAGAATTTCACTTAACAACACTAAAAAGTGGTCTTTAGAATCGGAAAATCAAATAGTTAAAGATAACACTgctacaaaagaaaatgaaaacgttGATGCTGCAAAGTGTATTTTGCCAATTTCTTCATTTGAGGATAAGACTGCAAGAGATGTTCACATTTGTCCTATTGATTCTTGTAGAAAATCATACTCAACCAAGTCCGGTTTAATAATGCATTTAAAGAAGCATGCTCCCCTTTCTGAAGTGCAAAATGGTAATTTTACACGTATGATCTCATCTAGTCTATCTTCTCTAGAAGGTAAGATCGTGTCCAATGAATTACAATGTTCTACAGATAAGCTAAGCGATCAAGTGGTCTCGACGCCgtttgaatcaatttttttttatgatcaaaCTCCAGAATCACCCATTCAAGAGAACTTACTACAGACTGAACCCCAAAACCAATTCGAATTGGAGCCATTAAACATTATAACCGCTAACTCGATAGGAGTACAAGTGACCAAAACGTCTACGAAAAGTAATAAAGGTTCTGCTAGAACAACATTTACCCGCGAAAATGTACTAAGTTTAAAGCCATACAGAAAAATCGTTGACGTAAGTGTAGAAACAAACGACGTTGTTTCAGATACAACGAACCTGGACAACGACCTATTACTATCGGACAATTTGCCCTCTATGGATTCTGAAGAACATATTGGGCTCCCAGCATACCAAATATTTTTGCTTGACATTGATCCTGCTGAGTGCTAG
- Protein Sequence
- MSRLAQKQQRPLPRLFRRHAVLHHHQQQQGPNENCAFAATRNVLSATCEAEDEDDHEAALDEVLIALQNATASHNDKHQLQRNKTKTIEDIKRWLQNTSESASYIGIHRRDNSQSSFERYLNKQLSEVLFDKDYATADVNGKTAKANIYYDFLNEFHNEKFSISQKEEEILLSDLQLDSLVELPCVEDNIILNNEILKPPNATSYNTVNVNTKDLIIRLQETIDRFSNNNDKIVNDLQVQNGLQKEKHRYGLRNSTSNINPIQENFYNTCLLRSIEDVTIHNLSLEKSDANLTNYGTNIDNENTITKRIPKKSNFQPTQMVTRSSLKKNQNINTSPKLATSKSKFQPSIIKQNRKYSSTEHSYCREQNSESFSNYELRKCRSRNNSIISDSHDDHIDDDEEDDDEKEKDPDFNIRNPLYYTHQEKEISNALEEVGITDRMLKHIRLADDTKVWQCHQDDCNRQFVKPCSLKSHLLTHFGIKPFKCDHDGCSWAFYTEFRLKLHKETHLKKKDYVCPVPGCKRRFTTIYNLASHEKLHTRPNRVICQVSGCTARFQTKRALDAHMKTHDESLAPYVCNFEGCGKRYYSSNAFMSHQRCHRYSDLDITCSWPGCGKTFDQPCRLKAHMRSHTGLKPYACTFKGCKWAFSTSSKLKRHQKKHTNDRKFVCDVEDCKKAFMRSEHLKEHKLTHAGERFFQCHICSSAFSAKSSLYVHVKKHSNKNFVSRPRHQQKKKKTVEKKTVGKKKDIHCPRVQPIRISLNNTKKWSLESENQIVKDNTATKENENVDAAKCILPISSFEDKTARDVHICPIDSCRKSYSTKSGLIMHLKKHAPLSEVQNGNFTRMISSSLSSLEGKIVSNELQCSTDKLSDQVVSTPFESIFFYDQTPESPIQENLLQTEPQNQFELEPLNIITANSIGVQVTKTSTKSNKGSARTTFTRENVLSLKPYRKIVDVSVETNDVVSDTTNLDNDLLLSDNLPSMDSEEHIGLPAYQIFLLDIDPAEC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01465661; iTF_01466558;
- 90% Identity
- iTF_01466558;
- 80% Identity
- -