Basic Information

Insect: Torymus geranii
Gene Symbol: RREB1
Assembly: GCA_900474355.1
Location: UCWB01000627.1:3541-10717[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.011 1.4 10.4 0.4 1 23 65 87 65 87 0.96

2 16 0.00037 0.047 15.0 0.1 1 23 102 124 102 124 0.97

3 16 2.1e-06 0.00027 22.1 4.5 1 23 130 153 130 154 0.97

4 16 0.075 9.7 7.7 0.2 1 23 251 275 251 275 0.95

5 16 0.4 52 5.4 3.1 2 23 281 303 280 304 0.92

6 16 4.3 5.5e+02 2.2 0.6 1 16 361 376 361 380 0.80

7 16 0.075 9.7 7.7 0.1 1 23 495 517 495 517 0.96

8 16 0.00029 0.038 15.3 0.4 1 23 526 548 526 548 0.98

9 16 0.0014 0.18 13.2 2.8 1 23 554 577 554 577 0.97

10 16 0.0014 0.18 13.2 2.2 1 23 975 998 975 998 0.97

11 16 0.00081 0.1 13.9 0.1 3 23 1280 1300 1278 1300 0.97

12 16 1 1.3e+02 4.1 6.5 1 23 1306 1329 1306 1329 0.97

13 16 0.0046 0.6 11.5 2.2 1 23 1378 1402 1378 1402 0.97

14 16 1.2 1.6e+02 3.9 2.6 1 23 1530 1553 1530 1553 0.93

15 16 0.017 2.2 9.7 0.4 3 23 1602 1622 1600 1622 0.93

16 16 0.0003 0.039 15.3 4.6 1 23 1628 1650 1628 1650 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.011	1.4	10.4	0.4	1	23	65	87	65	87	0.96
2	16	0.00037	0.047	15.0	0.1	1	23	102	124	102	124	0.97
3	16	2.1e-06	0.00027	22.1	4.5	1	23	130	153	130	154	0.97
4	16	0.075	9.7	7.7	0.2	1	23	251	275	251	275	0.95
5	16	0.4	52	5.4	3.1	2	23	281	303	280	304	0.92
6	16	4.3	5.5e+02	2.2	0.6	1	16	361	376	361	380	0.80
7	16	0.075	9.7	7.7	0.1	1	23	495	517	495	517	0.96
8	16	0.00029	0.038	15.3	0.4	1	23	526	548	526	548	0.98
9	16	0.0014	0.18	13.2	2.8	1	23	554	577	554	577	0.97
10	16	0.0014	0.18	13.2	2.2	1	23	975	998	975	998	0.97
11	16	0.00081	0.1	13.9	0.1	3	23	1280	1300	1278	1300	0.97
12	16	1	1.3e+02	4.1	6.5	1	23	1306	1329	1306	1329	0.97
13	16	0.0046	0.6	11.5	2.2	1	23	1378	1402	1378	1402	0.97
14	16	1.2	1.6e+02	3.9	2.6	1	23	1530	1553	1530	1553	0.93
15	16	0.017	2.2	9.7	0.4	3	23	1602	1622	1600	1622	0.93
16	16	0.0003	0.039	15.3	4.6	1	23	1628	1650	1628	1650	0.98

Sequence Information

Coding Sequence: ATGGCTCTCAATCTCGAGATAACAATGctggcttttttctctctcgagagCGCGCAGGAGTTCCGCGTAAATTGCAGAGAAGGAGTAGCAGGAGTGACGGCCGAGACTGGACCCGATCAGCGCGACGGCTGCAACGAGAGACAAACGGATGTTGCATCACCATTGGTCAACAGCGAGCAGCCCGAAGGAAGTCACCCGTGCCCGGCCTGTCCAACCGTGCTTGCGACATTGCGTGACCTGACGCACCATCTGCGCGACCACAATTCGCCCCGCAGTACCGACTGCAGCGGCGAGGAGGTCGACTACGCCTGCGGTGTCTGCCACAAAGTCCTCAGCTCGGCGAGCAGCCTCGACCGCCACGTGCTTGTGCACTCCGGCGAGCGTCCGTTCAAGTGCAAGCACTGCGATATGGCCTTCACGACGAACGGTAACATGAACCGCCATCTGAGGACGGCCCACCACCGGGGCGCCTCGCCCTCGCACAGCTGCACCGATTCCGAGGGCGGCAGTAGCGACAGCGAGAGGCCGCTGGTGAAGAGACGCCTCATCCAGGAGGAGTACAACAACAATGAGATCTCGAAGAGGAATTCACCGGACCTACTGGAGAAGAAGCTGAGGTCGCCTGAAAGCGCGAAACGCAAGTGTCCCGATTACGCCGACGAAGCTGACAGCCAGAGGCGACACAAGGTTCTTCTGAACGACTCGAGATCAGCCATCAAGGGTGCGTACACTGAGCAGTTAGTGCAAAACTATAACTGCACGGTCTGTGGTAGGCAGGACTTTACGAGTAGCGCTATGCTCGATGCGCACTACGAGACCAGCCATCCAGATTCCCCCGTCAGATGCGAGCCCTGCAACGAGTCGTTTAAGAACCATCGGGCTCTCAGCCTGCACCGATACATGACACACCACAACGACCAGCAGCACAACGATATTGTAGTGCCGAGGCACCTACGCAACAGCGTCGTCGGCTTCAATGACCTGACCTTCATGGACTTTTCTGCTGGAAAGTTCCCAGCCATCGCCCGTGCTGTGTGCGAGCAATCGCTGCACAGACCGGCATCGGGAGAAACACCCAAGTACCAGTGCTCCAAGTGCCTAAGGGCATTCCCCTGCCAGTCAGCGCTGGATGGGCACGAGACGGACTGTGGACAGCCCACGACGGAACAGAGAATGATGCATGATGACCATTCGATGAGAAATGATTTCTTCGCTGGActtgacctacagaacaaggcAGCCCTGGCTGAGGCCAAGGAAGGCAAGGACTTGGCTGACATCCAGAGCATTATCTCGTCTGTGTCATCTGGACCGATATTACAGAACTTCTCGAGGTCTGACGCAAGCACTCCcgataattgtaaaattaaacagaGCTTTGGATCCTCGGGATCTTCTGGCACACCGTCCTCGGAATTCCAGGAAGAAGAAGCTCAGGATGCTTTCGCAGCTGAGTttaggaaaatgaaaatgaagggCGAGTTTCCGTGCCGATTGTGCACAGCGGTGTTCCCGAACTTGCGGGCACTAAAAGGCCACAATCGTGCACACCTGAACATTCCACCGGGCATGGCTTACCCCTGCAACATGTGTACGTACAACAGCACCGACAAGGCCGCGCTGGTAAAGCACCTACGCCGGCACAATGGTGATAGACCTTACGAGTGCTCGCTCTGCAACTATGCCTTCACGACCAAAGCGAATTGTGAGAGACACGTGCGCAATCGTCACGGTAAACTCTCCCGTGAGGAGATCAAGAGCATCCTGATCTACCACCCAAGCGAAGACTCGACGAACGACGGCAACCTCGAGAGCAGTTCGCCCCGGCTCATGAGGGATGAGGTACGCAAGTCCCTTGTTTATCCCGAGCGCGATGAGCTGCCCTCGCAGCCGATGCACTTCCCGGAGATCAGGATCAAGGACGAAGCCAAGCTGCGTCAACCTGGACTGCCAGGTCTCCACGCCATCGGAATGAATCATTACGAAAAGAGTGAGCTATTTACCAGACCACCGACAATGCAGCCACTCGAGCTGACATACAGAACCGAAGAGCTAGAGAAAGCTCATCAGATGAAGCAACACCTGGAGGACGACCTGGACGACGAGCGGTCCTCGGACGGCAGCGTGAGTCTAGTCACTGATACCAAAGCCGATCATTCGGCAGTAGCAACATCAGCTGTACACCAAAGAACCCAAGCCAGTCCGATGGACCTGAAGAAGTCTGATGATACCAAGGAGTCCGCGACGCCGGCTGTGACAGGAAGTGGCGAGGATGCGCCTCTCGACCTATCGATGGACGTACTCGATTTGAGCAAGAAGGAGTCGGCCAAACTGGCCGCGGCGGCCGCAGCAGCTGCCTCCCTGGCTGCTGCCAACAAGGAGCGCGAAAGCAGCAACGACATTAGCAGTAACTTTGAGGAGCAGCTGCAGGCCAACCACAAGGATCTGTACAACACGACGAACCTGCTGACCAGTCTATTCAAGGCCGGCCAAGTCGGTGCCGACAGCTTTACCAACTACGCCAACCAGATGCTTTACCGCAGTCTGCCATTCCCTGGTGTAGGAGCTGGCTTCCTACAACCGTACATTTACCCGCACTTGCTCAGCCAGGATCTGGCAATGAAGGACAGACTGCAAAAGGAGCTCGTACGAGGTCTGCAGACCAGCGGTGGTAGCCTCGTTGAGCGCCCCACTCCAAACTACGCCGCGGCCTTTCCTCAGAATCCGCGCAGCTCTCTAAATCAAGTAAACGATCAAGTGACCGAGTACGCAAGTATGATGTCGtcaaaaataatgaacaaaccAATGACGACACGTGAGCGAACTGAAACATCACCTTCGTCTAATTCCGTTAAAATGGTCATTAAGAACGGTGTATTGATGCCTAAGCAGAAACAACGACGCTACAGGACCGAGCGGCCATTCACCTGTGAACACTGCGCTGCCAGGTTTACACTACGTAGCAACATGGAGCGTCATATCAAACAGCAACATCCACAACATTGGTGCCAGAGGCCTAGAGGGGCGCATTCCACCAGAGGGAGACCGCCGGCGAATCCACCTACTTTGCTTCACAGCCTGACGCAGTCGCAGAGCCATCAGACAATGTCGCAGTATCCTACACTACTGCCAAAACTAAACTCGTCTTTGAATTCCGATTACGGAAAACATGCCATTTCTGATGAAGTCAAGTACGCTATCTTAGCGCAACAGCTTAAAGGAAACAAGCCTGAAGAAAATGACACCGATGAAGAATTGATCATCGATGAAGAATCGGCCAATCAGGAGAAAGAGGCCCGAGCTAGAGAGCCAACGGAGAGGACATTAAGCCTTTTGCGAGGTAAATTGGAGGCTAATATTGAATCGAAAGCTAACGAGGATCATGAAATGAAGGAATCAAGAGTTTCCGATGAACTAAAGGATAAGCATAAGGAAAAACTGGAGAATCATTCTGAATATAAAGATGATGATGAGGAGAGAGACTTGAAGATGGAGGACGAATCTGGAGAATCCGACTGTGAGAAGGTAGAACCACGTGATTTTGTCAAGACCGAGATGGACGAAGATGTTAAGGAAGAAAACAACGAAGATCTGGCTAGCGTCTCGGAACTTCTAGACAACGCATCTCAGAACTACCAGCAGTTTCAATCGCAATACATGAGCGACGAGGAAGGCTTAGTCGCCTCAACAAGCGACTGTAACCAGTCGGGCAGTGACGAAAAGTCTGACTCATTCAACTCTGGCAACTCTGGCTCATCGACTtccaaaaagaagaagaagatgaagaagaagaaaaagaagaagtcTGCCTATTCGCTCGCACCCAACCGTGTAATCTGCCCGTACTGCTCGCGTCCCTTCCCTTGGACGTCGTCACTGCGCCGACATATTCTCACGCACACCGGTCAGAAGCCATACCAGTGCATGCACTGTTCGCTACTCTTCACGACCAAGTCTAATTGCGACCGTCACCTGCTCAGGAAGCACAAGAACGCGGCGCAAAAGCTCCACCATCCACGTACGCGCAGTACTTCGTCGCCTGAGCCTGCGGAGAGCACACCTCCAACCTGCGGCAACAACAACTCTAGCACGGCCAGCCAGTTCGCGATGAGGAATGTGCCCGAGCGCCCGTACAAATGCAACCAGTGCCCCAGCTCCACATTCTCCACCCTGGGCAACCTAAAGAAGCACCGCTCGACGAAGCACGCCTAtcaccaccatcaccatcacCACGAGTTATCCAAGTCTCGCCCAGAGTCGCCCGTCAGTGATCCTCAGCACAGTCCACAGGAGTGCCAGCAGGATTTTCCGCAGGACTGCAGCCAGAAGTCCCCACAAGAATGCGTCCAGGAGGAGATTCCTCAGGACTGCTCCAAACAGAACAATGACCAGAGTGGCTATGAGAGCCAATCGTCCGGCATCTCGGAGAACCTCGAGAAGAACAGCTCGACGCCACTTAATGCCTCCAAGAGCTCCAGTGGCAGCGCTGGTGTTAGCAGCGCCAACACCTCGTCGGCGAACGAGGCATCACGCTCGCGCAGAACGTCGCCCAGGTCGTCACCCGGGCCCACCGGCACCGAGACACCCTTCAAGTGCCACCTCTGCGATAGCGGTTTCTCCGAGCGACAGGACTGTCTGGACCACATACGGGACGTCCACGAAAGCGAGTTTCAGCTACTCGTGACCAAGGGTGCTCTCGACATGGACATCGACGAGGAGCCCATGCCGCCCGTGATACCCCCGCCCAGTGATGGCGAGGAGAGACGCGGAAAGTTCCCGGACTACAGCAACAGAAAGGTGATCTGCGCGTTCTGCATGCGTCGCTTCTGGTCGGCCGAGGACCTGCGCCGCCACATGCGCACGCACACGGGCGAGCGGCCGTTCTCCTGTGACATCTGCGGCCGTCGCTTCACCCTCAAGCACAGCATGCTCCGCCACCGCAAGAAACACGACTCAATCGACTCGAGCATGTACGTCGGCACGAGCGGCGACGAGGACAACGGTACCGGCACGGGTGGCACTGCATCCTCCTCGTCCGTCACACAACCGCCGACGATAACGCCCCGTCACCACTCCAGTGCCAGTGTGAGCGGTGTCTCCACGAGGCTACAGGAGCGCAACTCTTTACCACAGGTGGCGAGCGTAGCGACCGGTGACGCGGCGCCCAGTGGACTCATGCGGTTCAATCCGTACGACAAGCTGACGACGCTGACTGGCAAATTGACCACCAGTTCGAATCTGATGCTCGACGCCAACGACAACACAGACAACGATCTGATCTCCAACCTGCTAGGCATCCGGGACAAGAGCATCATCGACCGAGTGCTCCAGGCGCCCGACGACGCGGCCAAGCTTCTTGGCGTCAAGGGTAGCGGCGAATGA
Protein Sequence: MALNLEITMLAFFSLESAQEFRVNCREGVAGVTAETGPDQRDGCNERQTDVASPLVNSEQPEGSHPCPACPTVLATLRDLTHHLRDHNSPRSTDCSGEEVDYACGVCHKVLSSASSLDRHVLVHSGERPFKCKHCDMAFTTNGNMNRHLRTAHHRGASPSHSCTDSEGGSSDSERPLVKRRLIQEEYNNNEISKRNSPDLLEKKLRSPESAKRKCPDYADEADSQRRHKVLLNDSRSAIKGAYTEQLVQNYNCTVCGRQDFTSSAMLDAHYETSHPDSPVRCEPCNESFKNHRALSLHRYMTHHNDQQHNDIVVPRHLRNSVVGFNDLTFMDFSAGKFPAIARAVCEQSLHRPASGETPKYQCSKCLRAFPCQSALDGHETDCGQPTTEQRMMHDDHSMRNDFFAGLDLQNKAALAEAKEGKDLADIQSIISSVSSGPILQNFSRSDASTPDNCKIKQSFGSSGSSGTPSSEFQEEEAQDAFAAEFRKMKMKGEFPCRLCTAVFPNLRALKGHNRAHLNIPPGMAYPCNMCTYNSTDKAALVKHLRRHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLSREEIKSILIYHPSEDSTNDGNLESSSPRLMRDEVRKSLVYPERDELPSQPMHFPEIRIKDEAKLRQPGLPGLHAIGMNHYEKSELFTRPPTMQPLELTYRTEELEKAHQMKQHLEDDLDDERSSDGSVSLVTDTKADHSAVATSAVHQRTQASPMDLKKSDDTKESATPAVTGSGEDAPLDLSMDVLDLSKKESAKLAAAAAAAASLAAANKERESSNDISSNFEEQLQANHKDLYNTTNLLTSLFKAGQVGADSFTNYANQMLYRSLPFPGVGAGFLQPYIYPHLLSQDLAMKDRLQKELVRGLQTSGGSLVERPTPNYAAAFPQNPRSSLNQVNDQVTEYASMMSSKIMNKPMTTRERTETSPSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCAARFTLRSNMERHIKQQHPQHWCQRPRGAHSTRGRPPANPPTLLHSLTQSQSHQTMSQYPTLLPKLNSSLNSDYGKHAISDEVKYAILAQQLKGNKPEENDTDEELIIDEESANQEKEARAREPTERTLSLLRGKLEANIESKANEDHEMKESRVSDELKDKHKEKLENHSEYKDDDEERDLKMEDESGESDCEKVEPRDFVKTEMDEDVKEENNEDLASVSELLDNASQNYQQFQSQYMSDEEGLVASTSDCNQSGSDEKSDSFNSGNSGSSTSKKKKKMKKKKKKKSAYSLAPNRVICPYCSRPFPWTSSLRRHILTHTGQKPYQCMHCSLLFTTKSNCDRHLLRKHKNAAQKLHHPRTRSTSSPEPAESTPPTCGNNNSSTASQFAMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHAYHHHHHHHELSKSRPESPVSDPQHSPQECQQDFPQDCSQKSPQECVQEEIPQDCSKQNNDQSGYESQSSGISENLEKNSSTPLNASKSSSGSAGVSSANTSSANEASRSRRTSPRSSPGPTGTETPFKCHLCDSGFSERQDCLDHIRDVHESEFQLLVTKGALDMDIDEEPMPPVIPPPSDGEERRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICGRRFTLKHSMLRHRKKHDSIDSSMYVGTSGDEDNGTGTGGTASSSSVTQPPTITPRHHSSASVSGVSTRLQERNSLPQVASVATGDAAPSGLMRFNPYDKLTTLTGKLTTSSNLMLDANDNTDNDLISNLLGIRDKSIIDRVLQAPDDAAKLLGVKGSGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01465648;
90% Identity: iTF_01465648;
80% Identity: -