Tger005159.1
Basic Information
- Insect
- Torymus geranii
- Gene Symbol
- -
- Assembly
- GCA_900474355.1
- Location
- UCWB01008485.1:2255-8334[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.00011 0.014 16.6 0.1 1 23 48 71 48 71 0.96 2 24 0.043 5.6 8.5 0.2 1 23 77 100 77 100 0.94 3 24 0.2 26 6.4 1.5 1 23 113 135 113 135 0.97 4 24 4.4e-05 0.0056 17.9 0.9 3 23 181 202 180 202 0.96 5 24 1.5 1.9e+02 3.6 0.5 2 23 265 288 264 288 0.91 6 24 2.9 3.7e+02 2.7 0.0 2 23 297 319 297 319 0.84 7 24 0.068 8.8 7.9 0.1 2 23 326 348 325 348 0.93 8 24 1.2e-05 0.0016 19.7 1.2 1 23 356 378 356 378 0.98 9 24 0.00019 0.025 15.9 3.3 1 23 455 478 455 478 0.97 10 24 0.0014 0.18 13.2 0.5 2 23 485 507 484 507 0.95 11 24 0.00065 0.085 14.2 4.8 1 21 542 562 542 563 0.94 12 24 0.0025 0.32 12.4 1.8 2 23 577 598 576 599 0.93 13 24 0.36 47 5.6 4.3 1 23 602 624 602 625 0.96 14 24 0.0034 0.44 11.9 0.7 2 23 632 655 631 655 0.93 15 24 0.89 1.1e+02 4.3 0.2 2 23 663 685 663 685 0.95 16 24 0.84 1.1e+02 4.4 0.0 2 23 692 714 691 714 0.92 17 24 0.21 27 6.3 2.7 2 23 723 745 723 745 0.96 18 24 0.24 31 6.1 0.8 2 23 751 773 751 773 0.93 19 24 0.0087 1.1 10.7 0.1 1 23 839 862 839 862 0.96 20 24 0.011 1.5 10.3 2.5 1 20 891 910 891 912 0.94 21 24 0.3 38 5.8 1.9 2 23 1004 1026 1003 1026 0.94 22 24 1.1 1.5e+02 4.0 0.2 2 23 1033 1055 1032 1055 0.93 23 24 0.16 20 6.7 1.8 1 23 1066 1088 1066 1088 0.97 24 24 0.0029 0.38 12.1 0.2 3 21 1097 1115 1096 1116 0.93
Sequence Information
- Coding Sequence
- ATGCAAACGCCACTCATCAAGGAGGAGCAGAACATTACCAAAGAAAATTCCATGTCGCCATTTTCTACCGATAACATGGATAATGATGAGGAAGAGGAGCATGAGAACGGAAACGACAACATGCTCGAGGTGGAGACAGTCTTCGTTTGCGAAATTTGCACGCGCGACTTCAATGATCGAGCCTCGCTCTGGCTCCACATACGTGCCACCCACAAAGAATACGCAGCTTTCGCTTGCGGAATCTGTCTGAAAATTTGCGCAGACAATACGCAACTTCTCAGTCACGTCGCTATGTACCACGGAGGCGCGAAACTCCTCATGTCCGAGCAGAGAAGGTACAGCTGTACGGTATGCGGCCGACAGCACGACTCTCGTAAGAAGCTCATAACCCACGTCTCCATTCACAACATCGACCCTGGCTACGACCCGGCGAGTTTCGTTCAGCTCAATACCAACTATTACGGTGATAATATAAACAGCAACGAAACTGGCAACGACGGCCTGATCATGGACTGCGATGATGACAGCGAGAAGGTAGATTGTTACATCTGCTATAAATCCTTCCCTAGCGAGGATCACCTCATTCGTCATCAGAGAAATGCTCACAAAACCGAACAGATGGTTCCAGTAGGTGACTTCGGACCCAATGGTGGACAACCCGGACAGAACGGTACGCATAGCAGAGCGCAGTATCATCTGTTCTTTATCTGCGAGCTGTGCGGAAGCTCGCATCCTAGCAAATGGGAACGTTGGCTGCACGTCAGCAGTATGCACAACAATGAAGTGTCTATTAGgTGCGAACGTGATGACTGTGCCAAGATATTTGCGACCAAAGCTCTCCGCAACGAGCACGGGCAGCACCATCAGTTGCAAGGTAGCTCGCCCAACACCTGCGAGATCTGCGGCAAGCTGTGGGGTAGCCGCGTCGACTACTGGAAACACGTGATGGGCGTACACGCGGATACTGTGCCGCTCATCTGCGGCGTTTGCCTCAAGGTCTTCCCTGATGTGATGCAGCTTAGTCAGCACGTCAAGCTCAAGCATTGGCCACTGACCAACGGCGACTTTAGCTGCGACATTTGCGGTAGACCGTACTCGAACAAGAGCAAGATGTCGAGGCACAGAAAGATTCACGGATTGGATGGAGAACCATATAACCCAGCGGCGACGAATAGCAGTCTGATTATCAATGACGCCTCCACAGGCGATATTCCTGGTCTCCCAGTGCCACTACAATTGGACAATGGAATGCCACAATCGATGGAGCCATCGCCAAACGACCTCAGTTGTGACATGTGCGGTGATCTCAAGTTCCCCTGCCTCGAGGACCTGTGCAATCATCGTCGTATGGCGCACAACCTATTCCCTTGTGACTTGTGCAACAAGTGTTACGGTCGCACCTCACACCTCTGGAAGCACGTAAACCGTGTACACAAGGGCCACGAGGACGTCACTTGCAAGTACTGCCTAAAGACGAGCGCGTCAAAGGAACATCTTGCTGCACACATTGCCAAGATCCATCGGTACGAGCCCGAGGTCAAAATCGATCGCGATGTGGCTAACTACAAGAGCACTTCGTACAGCGCGGCTGCAGCTGCGGCAGCAATTGAGGAGGATGGCTTACACTTCTGCGAGAAATGTAATAAATCGTTCCACAAGAGGTACCTGCTTAGAAGACACATGAAGGGTTGTCAGAATTATAGAAAGGATCCGGGCGCGTTGCTGACGCGATGCAGAGCTTGCGAGCGGATCTTCAAGGATCGAGCGAGTTTGCAGAAGCACATAGAAAATCATCACACGTCGTATCAATGCCACCTGTGTAAACAGACGGTCACGTCGAAACTTGGAATTATGACGCACAACCGCATGCATCACATGCACCATCCGGATCTGACCTGTGAACTTGAAAACTGCCAGAAATTGTTCAGGACGAAAGAAGATCTTGAATCCCATCGTAAAGACCACAAACACCACGGCAGCCCGAATGTCTGCGACTTCTGTGGTGACACCGTCGAGAATAAACTCAAGCTCAAGATGCATATCCTCAGTCTGCACAGGAACGAGATCGGCGTCTCTTGCGGCGTCTGTTTGATTCCCATGAAAGACCCGAAGGATCTTAAGCGACACGTTGAGAAGGTCCACTGTCATGTCTTAGTCAAGCCCAACACGTGCCAGGTATGCGGCAAACAGTACGCCTCTAAGTGGAAAGCATTCGACCACACGAAAAAGTGCCACGGCAAGGTGTTCCGCACGTGCAAGCAGTGCCTCGCTGTATTCACCTCCGATGAGGATCTCCGCTACCATTACGAGCACATTCACAACATTCCCAAGGACCAGCTCGACGCGTTCCAGTACAGGCTCGAGGTAGCCGGTAACAAGATGGACGATTACGATCTTGGTCCATTAGAGGTTGTTGTTAAAGAAGAGCAAGAGGAGCTCGACTTTGATGAAGATCCCTTCGACGATGAAAACGGTAACTCGAATGATTCGAAGAGGCGGCGCTCTACCGACACCTACGACTGCGAGATCTGCCCGGAGATGTTCCTGAACGCGGATCTGCTGTCCTCGCATTACCGAAACGTGCACAACACAGATCCCCAGAGGATATTCAAGCGCATGAAGCTGGAGATGTCGAACAAGTCAAAGAAGAAGACACGGGAAAGGGAAAACTACGAGTGCAAGAATTGTCAGAAGCAGTTCTGTACTAAACCCCTATATCAGGACCACGTGAGCCAGTGCACGCGTAAGACTATGCCACCCACGACGTCGATTCTTGAGGCACATCTGAAGAACAATAACCAGATCAAGCGCGAGGAGCCCGAGCCCATTGTCTGCGAGACAAACTTGAATATCCCCGATTTCAATCTCTTTGAGGATATTAACATGCAGTTGTCAGGGCAAAAGCCTGTACCGAGCCTCATGCCATTAGGTGGACATTCTTCTAAGTCGTCCAAGTACTCGAGGAAGGACTCGCGTAAGGTTTATGATGAGTCGACAAATACTGAATGCACGTGCGAGGTGTGCGGCAAACAGTGGCCCGCGAAGAAGCATCTGTGGCAGCATCTGATCCGCTTCCACAGATCCGAGGCCGCTGTAACCTGCGGTGTGTGTTTGAAGCTCTGCGCCACGTATGACGACTTGGCGGAGCATCTGACGAACATCCACCCATCGATTCTCAGTACGACGGGCAACAACTTCACGTGCAAGATCTGCGGAAGGTATCATAATGCCCGCAGCAAACTGCTACTGCACATGAGTATTCACATAAACTGCAAGACCAACAATATGTGCTCGAGATGTAACAGGAGCTTTGAGAACGAAGACAAGCTGAAGGAGCACATTGCCACGTGCATGGGCGCGAGGGAGGAAGGCCAAGGCGTTGATGCCGAAGTGCAGCCTATCAAGGAGGAAAACGAGGAGAAGGGAAGCCTTATTGGAGATGAGGATGAACCCGAGGAGAATGACTACGAGTCTGATGAAGATAACTCGGGAGACAGTAGCTCCGACAAATCTAACGATTCTGATAACAGCAGCAGTAATAGCAACACTGATAGCTCCAGTGACGATGATGACAACAGCGATGATGATGAAGAGGATGGCAGGTCCCGAAACGTCGAGGAAGACAGCAGTAACAGCAAGGATTCCGACAACGCGGAAGAACCCCAACCTGTCCCCGTAAACACCGCGCCAGTTGAACAGCGTCAGATGATAGAGGAAAACGAGACCATGAGCCTCGGCGatgaggacgaggaggaggaggaggaggatgatgaGGACATGGAGGATAAAGCGCGCTATGAGGGCATGTCCGAGTCTGAGGAAGAGAACCATGATGAGTACCTGAAGAAGCAGcgccagcagcaacagcgcgaGATCGAGAACCGCTACGAGCAGACGCCCCACAAGGAGCCCATGCTCGTTAACTACTCTGACGACGAGGGTCCTCCAGCTCTCAGTCCTATGCTACCCGTCGCCATCAAAGCCCCACCCAGCGACGAACACGAGAGTCAGGATGAGGATGAACTTAACGGCACTCGGGCGCGTACAATCAGCGACTCGCTTACTAAGAAGGACAAGAGCGACGAGAGTGAGGACGATAGCAGTGAGCCTGAACAGGTGGAGGAAGACTCGGATGAGGATGACGAGGAGGATGTGATTCGCAGTCAGGCTCAAGTCGTCGATCCCAACAGCGCCTTCCATGCGGACGATACGTCACGCAGCAGCAACGAAGTTGAAGATGAACAAGAGGAAGGTGAGGAacaagaagtagaagaagagcaagaggaagaggaggtaGAACAAGATCAAGAACATGAACTTGAACAGGAACAAGAGCAAGAGGAAGAATGTGAAGGCGAAGTAGAGCACATCGAGCATGAGGTGCaggaagtagaagaagaagaggacgaTGAAAACGTTGATCACGGCATGGATGGAACAGAACTAGTCGAGGTTGACGAGAATGATATGCACAATCTCAACGGTACCGTTTTAATGTTAGCCAACGACGCGGACGGCAATCAGATCCTCATCGAGCGCAACATGGCCGACCTCGAGAACGACGACTCCGTGCACGACATGGCGCAGTACGTGTTCCAGGACGGTACGGGCTTTGCCCTCGAGGACTACCAAGCCATCGTCGCGAGTCAGGTCGACGAGGATGATGACGAACATCAGGCATACGCCATGCAGATCGGACACGCCCAGGAGGAGGTCGAGGATCAGGAACATGTacaggaagaagaggaagaagaggaggagcagAACGATATCCAAGAACAGATGGAGGAGGAAGTGGAGGAGGAAGAAGTAATAGCGAACGAggaagatgaagaagacgaaCATAGTGCCAAAAGCTAA
- Protein Sequence
- MQTPLIKEEQNITKENSMSPFSTDNMDNDEEEEHENGNDNMLEVETVFVCEICTRDFNDRASLWLHIRATHKEYAAFACGICLKICADNTQLLSHVAMYHGGAKLLMSEQRRYSCTVCGRQHDSRKKLITHVSIHNIDPGYDPASFVQLNTNYYGDNINSNETGNDGLIMDCDDDSEKVDCYICYKSFPSEDHLIRHQRNAHKTEQMVPVGDFGPNGGQPGQNGTHSRAQYHLFFICELCGSSHPSKWERWLHVSSMHNNEVSIRCERDDCAKIFATKALRNEHGQHHQLQGSSPNTCEICGKLWGSRVDYWKHVMGVHADTVPLICGVCLKVFPDVMQLSQHVKLKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDGEPYNPAATNSSLIINDASTGDIPGLPVPLQLDNGMPQSMEPSPNDLSCDMCGDLKFPCLEDLCNHRRMAHNLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCKYCLKTSASKEHLAAHIAKIHRYEPEVKIDRDVANYKSTSYSAAAAAAAIEEDGLHFCEKCNKSFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHTSYQCHLCKQTVTSKLGIMTHNRMHHMHHPDLTCELENCQKLFRTKEDLESHRKDHKHHGSPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKDLKRHVEKVHCHVLVKPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTSDEDLRYHYEHIHNIPKDQLDAFQYRLEVAGNKMDDYDLGPLEVVVKEEQEELDFDEDPFDDENGNSNDSKRRRSTDTYDCEICPEMFLNADLLSSHYRNVHNTDPQRIFKRMKLEMSNKSKKKTRERENYECKNCQKQFCTKPLYQDHVSQCTRKTMPPTTSILEAHLKNNNQIKREEPEPIVCETNLNIPDFNLFEDINMQLSGQKPVPSLMPLGGHSSKSSKYSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRSEAAVTCGVCLKLCATYDDLAEHLTNIHPSILSTTGNNFTCKICGRYHNARSKLLLHMSIHINCKTNNMCSRCNRSFENEDKLKEHIATCMGAREEGQGVDAEVQPIKEENEEKGSLIGDEDEPEENDYESDEDNSGDSSSDKSNDSDNSSSNSNTDSSSDDDDNSDDDEEDGRSRNVEEDSSNSKDSDNAEEPQPVPVNTAPVEQRQMIEENETMSLGDEDEEEEEEDDEDMEDKARYEGMSESEEENHDEYLKKQRQQQQREIENRYEQTPHKEPMLVNYSDDEGPPALSPMLPVAIKAPPSDEHESQDEDELNGTRARTISDSLTKKDKSDESEDDSSEPEQVEEDSDEDDEEDVIRSQAQVVDPNSAFHADDTSRSSNEVEDEQEEGEEQEVEEEQEEEEVEQDQEHELEQEQEQEEECEGEVEHIEHEVQEVEEEEDDENVDHGMDGTELVEVDENDMHNLNGTVLMLANDADGNQILIERNMADLENDDSVHDMAQYVFQDGTGFALEDYQAIVASQVDEDDDEHQAYAMQIGHAQEEVEDQEHVQEEEEEEEEQNDIQEQMEEEVEEEEVIANEEDEEDEHSAKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -