Tger000248.1
Basic Information
- Insect
- Torymus geranii
- Gene Symbol
- -
- Assembly
- GCA_900474355.1
- Location
- UCWB01002941.1:8142-11871[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00061 0.079 14.3 0.3 2 23 59 80 58 80 0.96 2 12 0.0001 0.013 16.7 4.5 1 23 82 105 82 105 0.94 3 12 0.41 53 5.4 3.0 1 23 111 134 111 134 0.91 4 12 7.5e-05 0.0097 17.2 0.4 1 23 140 163 140 163 0.95 5 12 0.00016 0.02 16.2 0.5 2 23 170 192 170 192 0.93 6 12 0.0014 0.18 13.2 0.2 1 23 197 219 197 219 0.94 7 12 0.00048 0.062 14.6 2.7 1 23 254 277 254 277 0.96 8 12 3.7e-05 0.0048 18.1 0.3 2 23 284 305 283 305 0.97 9 12 5.9e-06 0.00076 20.6 3.5 1 23 311 333 311 333 0.98 10 12 0.15 19 6.8 2.0 1 23 339 361 339 361 0.94 11 12 1.7e-06 0.00022 22.3 4.5 1 23 368 391 368 391 0.97 12 12 9.8e-06 0.0013 19.9 0.2 2 21 403 422 402 423 0.94
Sequence Information
- Coding Sequence
- CTGGACGCGTCACCACCGAAGGCGAAACCTCCAAGAACCCGTGCCGTACGTACGCGTGCCACGAAAGTCTCCCAGAAGCTGGAGCAGAACAACCGTACGGCGACCGTGTCACCGAAGAAAGCGCGCGTCGAGGAGGTGACATCGTCGTTGGGTATCGTGAAGGTCGAGGTGTTGGTATGCGCCAAGTGCCAGGTGACCTTCCCCGACAGAGAGTCGCTGAAGGAGCACTCGAAGAGCCACACCTACTGCTGCGACCACTGCGACATGTCCTTCCGGCTGCGAAAACAGCTGCGCAAGCACATCTCCGAGGCGCACAAGTCGGTAGCCCAGTACGTCTGCAACGAGTGCGAGAGCGTGTTCAAGTGCCGGCAATCACTGCGCGAGCATTTCGTACGCAAGCATACCGAGGGCTTCCGGTTTGCCTGTGAGGCCTGCGGCAAGAAGTTTAAGATGAAGAGCGACCTGTACATGCACGTCCAGAGCATACATAGCGACGAGCGCGAGGCTGTCTGCGACGTATGCGGCAAGACTTATCGTAACGGCTTCGCCCTCAAGAAGCACCTCGCCCACGCACACAATCAGCGACCGTTCGCCTGCGAGATATGCAAGCGCAGATTGGCCACCAAGGAATCCCTCGAGCAGCATAATCTCCTTCATCTGAGGAAGGAGCGCGCTGTGTCGTCAtccagcaccaccaccaccaccatcactaCCACCACCATCGCACTAAAACCGTCCACCTCCAAGACTCGCTCGCAACACACCTGCGAGCTGTGCCAAACGACGTTCCCCCGTTTCGCCGACCTGGTAACCCACCTGCGTCACCTACATGGTATCGAGCGTCCGGTCGTATGCGACATCTGCGGCCGTTCGTTCTGCAGTCCTTGGAGCGTCGGTCGTCACAAGCGCATCCACGAGGCGGAGAAGCGGTTCTCGTGCGACCTTTGCGACTACTCCTGCAGACAGAAGTCTAATCTGGTAATACACAGACGTCGCCACGCGAAGAACTACACCCACCGGTGCGACGTTTGCGGTAGTGGATTCATGCAGAGGACCAAGTATCTCGAACACAAGACCCTCCACGAAGGCAGCGGAGCGAACCACAAGTGCAAGGAGTGTGACAAGGTCTTCAACTACAAAAGGAACCTCGTGGCGCACATAAGACTCTGCCATCCGGAGATGTGTAACACTGGGGCACCGTTGCTCGAGTGTGCCTATTGTCCGCAATCGTTCACGACCGAGGTCAATCTTAAGCGACACCTCAAGTCTAGGATTGTAATGGGCACCGCttga
- Protein Sequence
- LDASPPKAKPPRTRAVRTRATKVSQKLEQNNRTATVSPKKARVEEVTSSLGIVKVEVLVCAKCQVTFPDRESLKEHSKSHTYCCDHCDMSFRLRKQLRKHISEAHKSVAQYVCNECESVFKCRQSLREHFVRKHTEGFRFACEACGKKFKMKSDLYMHVQSIHSDEREAVCDVCGKTYRNGFALKKHLAHAHNQRPFACEICKRRLATKESLEQHNLLHLRKERAVSSSSTTTTTITTTTIALKPSTSKTRSQHTCELCQTTFPRFADLVTHLRHLHGIERPVVCDICGRSFCSPWSVGRHKRIHEAEKRFSCDLCDYSCRQKSNLVIHRRRHAKNYTHRCDVCGSGFMQRTKYLEHKTLHEGSGANHKCKECDKVFNYKRNLVAHIRLCHPEMCNTGAPLLECAYCPQSFTTEVNLKRHLKSRIVMGTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -