Tger008303.1
Basic Information
- Insect
- Torymus geranii
- Gene Symbol
- -
- Assembly
- GCA_900474355.1
- Location
- UCWB01019099.1:977-3827[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.5 1.9e+02 3.7 0.0 9 22 113 126 112 126 0.91 2 14 0.00047 0.061 14.7 2.7 1 20 132 151 132 154 0.96 3 14 0.00085 0.11 13.8 0.8 1 23 160 183 160 183 0.92 4 14 6.6e-06 0.00085 20.5 0.9 1 23 189 211 189 211 0.98 5 14 5.4e-06 0.0007 20.8 0.9 1 23 361 383 361 383 0.98 6 14 0.0056 0.72 11.3 0.1 2 20 393 411 392 413 0.93 7 14 0.00025 0.032 15.5 2.7 1 20 435 454 435 457 0.92 8 14 0.09 12 7.5 2.8 1 23 462 485 462 485 0.95 9 14 1.1e-06 0.00014 22.9 0.3 1 23 491 513 491 513 0.99 10 14 0.0024 0.31 12.4 6.3 1 23 520 542 520 542 0.98 11 14 0.0002 0.026 15.8 0.7 3 23 550 570 548 570 0.97 12 14 0.002 0.26 12.7 0.1 1 23 576 599 576 599 0.96 13 14 0.01 1.3 10.5 0.1 1 23 613 635 613 635 0.97 14 14 0.016 2 9.8 0.0 2 23 883 904 882 904 0.96
Sequence Information
- Coding Sequence
- ATGGAgacaaatgaaaatgaacaaTTCGTTACATTTCCTTTAAATAGCATTCATGAAGGTATACAGGATAATATATCTCATGAAGAAATATGTGAGCCTGTTGATGACTGCATGTTACAAGAAGGTTTAACTGAAGTTACTGTCTGTGATGTTAATGGAGATATAACAGAAGATCAAGTTGCTGTAgaaattttaactgtaaattatgaagatgaagaaaatcAGAATACAGTTGCTTATccaattcatttgaaaaaagataCTTCTCAACAATTTACAACTGGAGATGAATCAATGGCTGTTGAAGCATTACGCCAATTGGGAGGAATGTATCCTTgttttgaagataaaaaagaattaactaAACACCAAATAACTTGTACATTGGATAAACATACTTGCGATACATGtggtgaaaaatttgaaaggaaaatagatttaaataatcatatggTATGCCACCAAGTTGATCGACCACATGCTTGTAGAACTTGTGGCAACTTGTTTAAATCTAAAGCAAATTTGCAGGTACATATGACTGAAGTTCATCAGGTTGAACGGCCTCATAAATGTACAGTTTGTGGAGCTGATTTTCAACGACCATCAAGTTTATCTAATCATATGAAAATTCATAGCTATGTTGCTGGAAGAGCATTGATGCAAAATCAAGGAAATAATCTAACAAGTGTTGAACATTTTAAAGATGTCTCTGATTCTCAAGAGGGGTCTGTAATAGCAACTGCAGTGCaaactatacaaaattttgaaatcccACAAGTACAATGGGCTGTACAAACCTACAATTTTACAACTGATCAAAATCAAGACAATGTTGATAGTTTGACGAGTCAGTCACAAAAATTAGGTACTTTGCAAGAATTTACAGTATTACCTAATGGAGAAGTTGCACAATTTGAATATACTTCACAAAATCTAGAGAGTAACCAAATACATCAACAGTACAGCTTAACTTTAAATTCCCTTAACAGTTCTGATTCATTAGTAAAAATAGAAACTACTAATGCTAATAACGATAAACAAGAAGCGTATATTAAGATAGATTTACAAGAAAACAAAGGTCATACTTGTAATCTATGTGGTGTAAGTTTTGCACGTGCTTCTTCTTTAACGTTACATGAAAAAACTCATGTAAAAAATGACTGGGCATTACCTGTAGAATGTGAATATTGTGATAAGCAATTCCAGGATGCTAACTTTTTAGCAACTCATCAAACTTCTTGCACCAAAAAGTTACTGCAAAACAATACTGATCCACTTGCTGCAAATACAAAATATGGAAAACATGCTTGTTCAGATTGTGggaaaaaatttacaacaaaacaaaaaatgttcaggCATCAATGGATTCATCGAAAGAAAACTCATTCATGTGAGATGTGCCCTTCCCAGTTTGAAAAACAATCTGAACTTGATGAACACAGATTATCATGTCATCCAGGTGATTCACCTTTTACTTGTAATGAGTGTGGTAAAAGTTTTGTATCCCGCCAAGGACTTTGGGAACATGGGAGAACACATGCTGGAAGTCCAGCTTACTTTCACTGTGATACAtgttcaaaaacattttcttctaGACAAGGATATTTGATTCATCACCGAACACATACAGGAGAACGTCCATATGGCTGTAAATTTTGTTGGAAATCGTTTCGTGATGGGGGAACTTTGAGAAAACATGAACGAATACACACTGGTGAAAGACCTCATGTATGTCCATTATGTGCCAGAGCATTTAATCAGAAAGTAGTTTTACGTGAGCATGTAAGGTGGGTACATGCAGCAGGAAAAAATGAGACTGAAGCCACTGAACCTCCATATCCTTGTCCTTTATGTGGTATCTTATCTCAAGATCGAGATGAATTATGTGCACATATTGTTAAACATTCAGATCAAATGATAGCAGAAGCTAAAGCCAAAAATAATAGTGTTGTTGTAAAAGTaaagccaaaaaaaaagaaaggaaaagcaTCAGAAGGGAAAGCAAAAGCAACACACTCAAAATCATTAGGGACTCGAGTAATTACTGCTTCAGAGCAAAGCAAAGCTTTACTTTCCATTACAGAACAATCAGATGCTTCAATGGAAACACAGGATACATATTTAGttgtgaaaaatgaatatgataATGCAGTTTGCATTAAAGCATACACGAGAACTAATGATACTCAACCAGATGAACAAAGTGAATCTATTAATGTAATAACGATTGCTAAATCACCAAATATTGAAGATGACAAAGTTGTTAATGTAGTAAATAGACAGTCTAATGTGAATACTATGCATTTAATTCCATTTACTACATCTGGTGAAACGATTCATCTTATTTCtactaataaacaaaacaatacaTTACATCTGATATccaaacaaaatgaaaatttacctGTTTTGGCAATTCCTAATCCTGACACAAATGAAAGTTTTGCAAATCAAATTTCACAAATAAGTAATTCTGAGACTTTAATAGATATAGTCACAGAAGATTGTTCTAAAGATGATGAAGAATGTGATGGAAATATTCACACAGAAACTTTAATAATAGAGCATGTTCCCATGGAATGTGCTGAAATGGAATctgaacaaattataaataaagaagaaactgATGATGAAAGTGAAGAGTTAGTATGTGGTATTTGTGGAAATGattttgatgataaaaatgtattaatggAGCATgtgaaaattcatatataa
- Protein Sequence
- METNENEQFVTFPLNSIHEGIQDNISHEEICEPVDDCMLQEGLTEVTVCDVNGDITEDQVAVEILTVNYEDEENQNTVAYPIHLKKDTSQQFTTGDESMAVEALRQLGGMYPCFEDKKELTKHQITCTLDKHTCDTCGEKFERKIDLNNHMVCHQVDRPHACRTCGNLFKSKANLQVHMTEVHQVERPHKCTVCGADFQRPSSLSNHMKIHSYVAGRALMQNQGNNLTSVEHFKDVSDSQEGSVIATAVQTIQNFEIPQVQWAVQTYNFTTDQNQDNVDSLTSQSQKLGTLQEFTVLPNGEVAQFEYTSQNLESNQIHQQYSLTLNSLNSSDSLVKIETTNANNDKQEAYIKIDLQENKGHTCNLCGVSFARASSLTLHEKTHVKNDWALPVECEYCDKQFQDANFLATHQTSCTKKLLQNNTDPLAANTKYGKHACSDCGKKFTTKQKMFRHQWIHRKKTHSCEMCPSQFEKQSELDEHRLSCHPGDSPFTCNECGKSFVSRQGLWEHGRTHAGSPAYFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKSFRDGGTLRKHERIHTGERPHVCPLCARAFNQKVVLREHVRWVHAAGKNETEATEPPYPCPLCGILSQDRDELCAHIVKHSDQMIAEAKAKNNSVVVKVKPKKKKGKASEGKAKATHSKSLGTRVITASEQSKALLSITEQSDASMETQDTYLVVKNEYDNAVCIKAYTRTNDTQPDEQSESINVITIAKSPNIEDDKVVNVVNRQSNVNTMHLIPFTTSGETIHLISTNKQNNTLHLISKQNENLPVLAIPNPDTNESFANQISQISNSETLIDIVTEDCSKDDEECDGNIHTETLIIEHVPMECAEMESEQIINKEETDDESEELVCGICGNDFDDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01466518; iTF_01468250; iTF_01465615; iTF_01469091; iTF_01469943;
- 90% Identity
- iTF_01466518; iTF_01468250; iTF_01465615;
- 80% Identity
- -