Tger003493.1
Basic Information
- Insect
- Torymus geranii
- Gene Symbol
- lola
- Assembly
- GCA_900474355.1
- Location
- UCWB01007798.1:4945-8003[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-08 1.6e-05 25.4 0.1 9 40 346 378 343 383 0.87
Sequence Information
- Coding Sequence
- ATGATGGACTACATGTACAGGGGGGAAGTAAATATCTCCCAAGACCAGCTTACGGCCCTGTTGAAGGCGGCGGAATCCCTGCAAATTAAGGGCCTGTCGGACAACAACAGACCGCAAACACAGCAGCCCGCGACCGGCAAGGTTGAAAATACGAGGCCCGCGAAAACGGCGTCCTCGACGGTCGCACCAGTTGCGGCCGACATTCCACACGCGTCTTCCGGTCTGACCATAGAGAAGAACAGCAGCAAAGTTCCTAGGACGAGTATGCAGCAGGTCAACGTCAGTGATCTGCCCGAAGACTCGGCCAGTCCTCAACTCAGGGGTCTCTCCTCCAGGGAAGGATCACAAAGCCCGACGAGGAAAAGAAAGAGGTTGCGAAGGAGAAGTCTCGGTAACGACGACACAAACTCCATGGAAAATCACGAAGCATCTAACTCGAGTGACGTTAACATCAGCGCGCCAGCGCTCGGAGTCGCGCCGGTCGCAGAAGAAAAGACTCACGCCGATCCTGCGGATTCGATCGGCAGGTCAGCGCTAATGCAGCAGCTCACGAAACCCGCAGAAGAGATGCTTCAGTTGCCAGTCGAAAAGCCAGAACCAAGTGATGAAATGATCCAACCAAAGTCTGAATACCTGGATGACCAGGAAAGTGTCGAAGACCTCACGAATCTGGATGACGACATGAATGACCTCAACGAAATGGAACAAGACAATAGTAGAGCGGGCCCCAGCAGTCATGATCCTTCCCAACATCCTGGTGGGTGGTCGGTGGGTGGTGGTCGCGGTACGAAACTTCGAGGCGCCtcgcgctcgtcgtcgtcgacagcGGCGGCTGTCTGGGGCGCCTCGCATTTCCTAGCGTCGTCTCCGTTCGACGACAATCGCGCTATTAATCGTCGCAGCAGCGCCGTCGGCATTAATAATGATGGCAACAACGCGACCACTACCGCCTCAGCTGCGGACGTGGGCGCGTtgctgcgctcgctcgctagcaaGCAGGGCAGGAAGTATAGCTTAGACTCGGTTAGGCTCTCGCTGGAGGCTATACTGCAGCAGGGCGTGAGCACGACCCACGCATCGGAGATGTACGGCATCAATCGATCGACCCTGCAGTTCTATCTGAAAAAGTTAAACGTCGTGAGGCGCAGGCGCATGGTGTATCGGCCCAGTGAGGCCGGTGGCCGTTCCGCACAGTAG
- Protein Sequence
- MMDYMYRGEVNISQDQLTALLKAAESLQIKGLSDNNRPQTQQPATGKVENTRPAKTASSTVAPVAADIPHASSGLTIEKNSSKVPRTSMQQVNVSDLPEDSASPQLRGLSSREGSQSPTRKRKRLRRRSLGNDDTNSMENHEASNSSDVNISAPALGVAPVAEEKTHADPADSIGRSALMQQLTKPAEEMLQLPVEKPEPSDEMIQPKSEYLDDQESVEDLTNLDDDMNDLNEMEQDNSRAGPSSHDPSQHPGGWSVGGGRGTKLRGASRSSSSTAAAVWGASHFLASSPFDDNRAINRRSSAVGINNDGNNATTTASAADVGALLRSLASKQGRKYSLDSVRLSLEAILQQGVSTTHASEMYGINRSTLQFYLKKLNVVRRRRMVYRPSEAGGRSAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01468943;
- 90% Identity
- iTF_01467358;
- 80% Identity
- iTF_01467358;