Tger031633.1
Basic Information
- Insect
- Torymus geranii
- Gene Symbol
- -
- Assembly
- GCA_900474355.1
- Location
- UCWB01012547.1:3298-6258[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.4e-12 3.3e-09 37.2 0.0 1 39 139 178 139 182 0.90 2 4 7.3e-12 1e-08 35.6 0.0 2 39 194 231 193 234 0.94 3 4 1e-18 1.4e-15 57.6 0.0 2 45 249 293 248 293 0.97 4 4 3.2e-18 4.5e-15 55.9 0.0 1 42 300 342 300 343 0.97
Sequence Information
- Coding Sequence
- ATGTTCTGTCACACAGGTCTCGGGCATTATGGGCATCATCCGGACCCGGCGGAGGTCGACCTACCGCCGGAGACACAGCCAACGCCGCCCAGCGCCACCCTCGTAGGCACAACCATCACTCACCTCAGGGATCCCGATCACCATACGGCAGACATCCAGAGCTGCGACAGCGTGAAGATAAAATTCGAGACGCTGCACACGATGGACTCGTCGGATACGATCGACATCGACAGCCACATGTCCGACCGGGCGAGCGTCAGCTCGAAGAACGCCGATGACAACATGATGATGATAACGCCGGAGCTGCTCGGCCTCATGCCGTCCGGAAGCAGCGTGCACTCCGACTCGGGAGAGAACAATTCGCGCAGTCACTCTGGACAGTCGGGATCGCATCATCATGGTTCCAAGTCCTGGACGCAGGAGGATATGGACGCGGCGCTCGACGCGCTCAGAAATCACGATATGAGCCTCACTAAGGCTTCCGCGACATTCGGCATCCCCTCGACGACGCTCTGGCAGCGCGCGCACCGCCTCGGCATCGACACGCCGAAGAAGGACGGCCCGACGAAATCCTGGAGCGATGAGAGCCTAAACAACGCATTGGACGCGTTGCGCACCGGCACTATATCTGCGAACAAGGCCTCAAAGGCTTTCGGCATACCCTCGAGCACGCTCTATAAGATTGCGAGGCGAGAGGGCATCAGATTAGCGGCCCCTTTCAATGCAAGCCCGACGACCTGGTCACCCGCCGATCTCGATCGCGCACTAGAGGCGATAAGGTCCGGGCAGACGTCCGTGCAGAGGGCGTCGACGGAATTTGGCATACCTACCGGGACGTTGTACGGGAGATGCAAGAGGGAAGGCATCGAGCTCAGTAGAAGCAATCCCACGCCGTGGAGCGAGGATGCCATGACAGAGGCGCTCGAATCTGTTAGATTGGGCCACATGAGCATAAACCAAGCGGCGATTCACTACAACCTGCCGTACTCCTCGCTCTACGGGCGCTTCAAGCGTGGCAAGTACGAAGAGCCGGTGGTGAACGAGATGTCGCAGGATGGCTCAGCACAGCACTTCCACCAGAGTCCGACGCCGAACAATCACTCATCCTCGCTGCCCGACCAGATGCCCTACCAGGGCAGCTGA
- Protein Sequence
- MFCHTGLGHYGHHPDPAEVDLPPETQPTPPSATLVGTTITHLRDPDHHTADIQSCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNADDNMMMITPELLGLMPSGSSVHSDSGENNSRSHSGQSGSHHHGSKSWTQEDMDAALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALESVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNEMSQDGSAQHFHQSPTPNNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00692811;
- 90% Identity
- iTF_00692811;
- 80% Identity
- -