Taur011774.1
Basic Information
- Insect
- Torymus auratus
- Gene Symbol
- -
- Assembly
- GCA_900474315.1
- Location
- UXGD01003819.1:12357-16652[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.9e-06 0.0004 21.3 2.4 1 23 315 337 315 337 0.98 2 14 1.6e-07 1.7e-05 25.7 0.6 1 23 343 366 343 366 0.96 3 14 0.00095 0.098 13.8 0.8 1 23 372 394 372 394 0.97 4 14 6.4e-06 0.00066 20.7 3.6 1 23 400 422 400 422 0.98 5 14 6.4e-05 0.0066 17.5 4.3 1 23 428 450 428 450 0.97 6 14 4.8e-05 0.005 17.9 2.3 1 23 456 478 456 478 0.96 7 14 0.00059 0.061 14.5 2.2 1 23 484 507 484 507 0.96 8 14 0.00037 0.039 15.1 0.2 1 23 604 626 604 626 0.99 9 14 1.2e-07 1.2e-05 26.1 1.9 2 23 633 655 632 655 0.95 10 14 0.11 11 7.3 0.7 1 23 661 683 661 683 0.98 11 14 5.1e-06 0.00053 21.0 1.9 1 23 689 711 689 711 0.96 12 14 2.1e-05 0.0022 19.0 0.8 1 23 717 739 717 739 0.98 13 14 0.00024 0.024 15.7 1.1 3 23 747 767 745 767 0.98 14 14 1.4e-05 0.0014 19.6 0.4 2 23 774 796 773 796 0.96
Sequence Information
- Coding Sequence
- ATGGACCagataaattcagaaaatgttCAGGTTGTGATAAAAGCTGTTGGGAATTCAGGAATAGTAATTCCAAAAGGATTCGTAGACAAAGATGGAGTTAAGGGgactcaatattttttaaatgtcgaTCAAGGTGTGGTGGATGATAATGAAGGTACCCAATTCGTTCCTGTGGACGGTGAATGTGAAGGAAGCGAGGAGGCACAGTTTGTTACTATGGAAGTCGGAGATGCTGGTCAAATTATCTTACACAATAAGGATGTGATAATTTATGATGAATTGTGTAGGGTATGTGCCAATCCAAGTGATCGATTTATTCCAATATTTAGCGAGGAAGGATTGGAACATAATTTACAAGAAAAGATTCATACGTATTTACCTTTTCAaGTATCTGAAAATGACAGTCTTCCTCTTCAAGTTTGTTATAACTGTGCAGCTACGTTACTATCATGGCATGAACTGTACAAAGACTGTCTTGAATCGCAGCAACGATTAATGGAACTTCAATCAAAACTTCATCCAAAAGAACAGtactaCAATGACCCAACCGTAgaagatgaaaatattgaaaatatattagaagTTGAAACTAGTAATAATGAAGAGGCACAGaCTGAGGACAAAGAGGAGAATGATGCACAATCACTGCATATTATCACTGCTTCAGAATTAGACagGTCCAACAATTTGCAGACATcagttaaaaaatcttttgatgtAATGATTGCAAATGAGGATACCGTTgacaaaatggaaaataaaaaagctaaTGCTGATAAAGGTGAACGCTGGATGACGGTGGCACACTTCGCGAAATGTCTGCCAAATCCTAGCGCTTTACCTGACGCTCAAAGCATAAGTGATGAAAACGAtgctgcaaataaaaataagaaactcAATCAGAATTCGAATAAAGCTAAACGTAACTTAACGAATAAATCTTATGACTGCAAGGATTGCAGAAAAAAGTTCAATTCCAGAGATTCACTTTTACGTCATACGAGAATCCACAAAGATGAACGTCCTTTTACATGTCACATATGCGGCAAACAATTCCGTGATTCTGGCGGGCTATGGCGTCATATTAGAGACGTACatgcaaaagttaaaaatttctcatgCAAGTTTTGCGGAAAGACTTTTGCGGCGAAAGCGTCGAAAGATGATCATCAGCGGATTCATACGGGCGAGAGACCTTACGTTTGCGACATCTGCGGAATGTGCTTTAAATCGAAATCTTCGCtttatatgcattttaaaaCACATACCGATGAGTTTCCACATCCTTGCGTGcattgtaataaaaagtttcgCAGAAGACAGGAACTTGTGTCGCATATATCGACGCATACcggcgaaaaaaattttgaatgtgaCATATGTCGAAGAAGGTTTAGGCTAAAATCAGAACTCAAGAGGCATAAGTATATCCATTCGGATGAAAAACCGTTTGTCTGTGATGTTTGTGATTTTCGCTCTAGACAAAGGCGTTATCTGAACAACCACATGAAGCAAAAACACAACAATGTAGTAAAAGATGAATCGAATACATGCATGGCTATGGAAGACGGCGAGGTCATCACCATCCTCACGACGGCGGCGCCAGCGCCAGTACCCGCCGCGCCAGCGCCTGTACCAACGAAACGAAAAAAACGCAAGCTCAAAGACCCATTGAGGCTCGACAAGAAGTCCTCCAAGTCGCCGAGGCGCTCGAGTTCCCAGCTCTCCTCCGCCAAGGCTAATTCTCGTAATCTGCAGCGTCGACACGAGCTAGCGCGAGCTAAGGTCAGCCTAGCAGGCACGACGTTCTTTAAGTGCCCGACGTGCGCGAAGCTCCTCTCGACGGCTTACAACTACGTCGCCCACCAGCGCGTGCATACGCACGAGAAGCTTTGCACGTGCGAGATGTGCGGCAAGAGCTTCACGGTTTCGTCCTCGCTGACGCGCCACATGCGTGAGGTCCACGAGAAGATCAAGGACTACAAGTGTAACTTCTGCGAGCGCAAGCTCGCCTCCAAGGTGGCGCGAGACGAGCATGAACGCACGCACACGGACGAGCGACCGCACGTCTGCGACGTATGCGGCAAGAGCTTTCGGCAGCGTGCCTCGCTGTCCGTGCACAAGCGTTTTCACACTAAGAACAACTTGTACAGCTGTAAAGAGTGCAATAGGGGCTTTCCCCGCAAGCAGGACATGGAGAGGCACGAGCTCACCCACACCGATCAGAAGCCCTATGGCTGCAAGCTCTGCAGCAAGACCTTCAGGAGCTCGGCCTCGGCCATCAGGCATAGACAGACGCACGACGAGAGCAATGCGCTTATGTGCGACGTGTGCGGCGAAAGCTTTAATCAGGAGAGGTATCTCAAGAATCACCTTAAGAAAGTACACAAGAGCGACTGA
- Protein Sequence
- MDQINSENVQVVIKAVGNSGIVIPKGFVDKDGVKGTQYFLNVDQGVVDDNEGTQFVPVDGECEGSEEAQFVTMEVGDAGQIILHNKDVIIYDELCRVCANPSDRFIPIFSEEGLEHNLQEKIHTYLPFQVSENDSLPLQVCYNCAATLLSWHELYKDCLESQQRLMELQSKLHPKEQYYNDPTVEDENIENILEVETSNNEEAQTEDKEENDAQSLHIITASELDRSNNLQTSVKKSFDVMIANEDTVDKMENKKANADKGERWMTVAHFAKCLPNPSALPDAQSISDENDAANKNKKLNQNSNKAKRNLTNKSYDCKDCRKKFNSRDSLLRHTRIHKDERPFTCHICGKQFRDSGGLWRHIRDVHAKVKNFSCKFCGKTFAAKASKDDHQRIHTGERPYVCDICGMCFKSKSSLYMHFKTHTDEFPHPCVHCNKKFRRRQELVSHISTHTGEKNFECDICRRRFRLKSELKRHKYIHSDEKPFVCDVCDFRSRQRRYLNNHMKQKHNNVVKDESNTCMAMEDGEVITILTTAAPAPVPAAPAPVPTKRKKRKLKDPLRLDKKSSKSPRRSSSQLSSAKANSRNLQRRHELARAKVSLAGTTFFKCPTCAKLLSTAYNYVAHQRVHTHEKLCTCEMCGKSFTVSSSLTRHMREVHEKIKDYKCNFCERKLASKVARDEHERTHTDERPHVCDVCGKSFRQRASLSVHKRFHTKNNLYSCKECNRGFPRKQDMERHELTHTDQKPYGCKLCSKTFRSSASAIRHRQTHDESNALMCDVCGESFNQERYLKNHLKKVHKSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -