Taur026029.1
Basic Information
- Insect
- Torymus auratus
- Gene Symbol
- -
- Assembly
- GCA_900474315.1
- Location
- UXGD01001818.1:15304-20742[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00016 0.017 16.3 0.6 1 23 86 108 86 108 0.97 2 19 0.0002 0.02 16.0 4.5 1 23 110 133 110 133 0.94 3 19 0.8 82 4.6 3.0 1 23 139 162 139 162 0.90 4 19 0.00014 0.015 16.4 0.4 1 23 168 191 168 191 0.95 5 19 0.0003 0.031 15.4 0.5 2 23 198 220 198 220 0.93 6 19 0.0027 0.28 12.4 0.2 1 23 225 247 225 247 0.93 7 19 1.1e-07 1.2e-05 26.2 0.3 2 23 254 275 254 275 0.97 8 19 0.00015 0.016 16.3 2.9 1 23 281 303 281 303 0.98 9 19 2.3e-07 2.3e-05 25.2 0.5 1 23 309 331 309 331 0.98 10 19 0.00093 0.096 13.9 2.7 1 23 391 414 391 414 0.96 11 19 7.1e-05 0.0074 17.4 0.3 2 23 421 442 420 442 0.97 12 19 1.1e-05 0.0012 19.9 3.5 1 23 448 470 448 470 0.98 13 19 0.29 30 6.0 2.0 1 23 476 498 476 498 0.94 14 19 3.3e-06 0.00034 21.6 4.5 1 23 505 528 505 528 0.97 15 19 9.7e-06 0.001 20.1 0.5 2 23 540 562 539 562 0.94 16 19 0.0011 0.12 13.6 2.9 3 23 574 594 569 594 0.96 17 19 1.3e-08 1.4e-06 29.1 0.3 2 23 601 622 601 622 0.97 18 19 2.5e-06 0.00025 22.0 0.6 1 23 628 650 628 650 0.96 19 19 1.8e-06 0.00019 22.4 0.1 1 23 656 678 656 678 0.98
Sequence Information
- Coding Sequence
- ATGAGCGAGAATAGAATTAAGAAGTTGACGATTTTGGTTGAACGacgCAAGACGACGCTACGCCCCGCCCGCACGAGGACAGTCCTGGACGCGTCACCACCGAAGGCGAAACCTCCAAGAACCCGTGCCGTACGTACGCGCGCCACGAAAGTCTCCCAGAAGCTGGAGCAGAACAACCGTACGGCGACCGTGCCGCCGAAGAAGGCGCGCGTCGAGGAGGTGACATCGTCGTTGGGTACCGTGAAGGTCGAGTTGTTCGTGTGCGCCAAGTGCCAGTTGACCTTCCCCGACAGAGACTCGCTGAAGGAGCACTCGAAGAGCCACACCTACTGCTGCGACCACTGCGACATGTCCTTCCGTCTGCGAAAACAGCTGCGCAAGCACATCTCCGAGGCGCACAAGTCGGTAGCCCAGTACGTCTGCAACGAGTGCGAGAGCGTCTTCAAGTGCCGGCAATCACTGCGCGAGCATTTCGTACGCAAGCATACCGAGGGCTTCCGGTTCGCCTGTGAGGCCTGCGGCAAGAAGTTTAAGATGAAGAGCGACCTGTATATGCACGTCCAGAGCATACATAGCGACGAGCGCGAGGCTGTCTGCGACGTATGCGGCAAGACTTACCGCAACGGCTTCGCTCTCAAGAAGCACCTCGCCCACGCGCACAATCAGCGACCGTTCGCCTGCGAGATATGCAAGCGCAGATTGGCCACCAAGGAGTCCCTCGAGCAGCACAATCTCCTTCATCTGAGGAAGGAGCGCGCTGTGTGCCAGGTATGTGGCAAGACCTTCAGCGGCAACGACGCCCTCAAGAAACACATGAGGATACACACGGGTGTGAGGCCATTCCCGTGCAAGGTTTGTGGTAAAGCCTTCAGGAGACAGAACACACACAAGCAGCACCTACTCACGCATACGGGACAGCGGCCTTATGTATGCGATATCTGCGGCAAGACGTTCACCCAGAAGCCAGGACTAATTACGCACAGGAAGAAACATCCGGGACCGTTACCACCGCTACCCGCGATCTCGATCGATTACGTCATTGCGGATCTGATGGAGAAAACGGGGAAGACGACGCACATCGACGATGCGTTGTCGTCGtccagcaccaccaccaccatcactaCCACCACCATCGCACTAAAACCGTCCACCTCCAAGACTCGCTCGCAGCACACCTGCGAGCTGTGCCAAACGACGTTCCCCCGTTTCGCCGACCTGGTAACCCACCTGCGTCACCTGCACGGTATCGAGCGTCCGGTCGTATGCGACATCTGCGGCCGTTCGTTCTGCAGTCCTTGGAGCGTCGGTCGTCACAAGCGCATCCACGAGGCGGAGAAGCGGTTCTCGTGCGACCTCTGCGACTACTCCTGCAGACAGAAGTCTAATCTGGTAATACACAGACGTCGCCACGCGAAGAACTACACCCACAGGTGCGATGTTTGCGGTAGTGGATTCATGCAGAGGACCAAGTATCTCGAACACAAGACCCTCCACGAGGGCAGCGGAGCGAACCACAAGTGCAAGGAGTGCGACAAGGTCTTCAACTACAAAAGGAACCTCGTGGCGCATATAAGACTCTGCCATCCGGAGATGTGTAACACTGGGGCACCGTTGCTCGAGTGTGCCTACTGTCCACAATCGTTCACGACCGAGGTCAATCTTAAGCGACACCTCAAGTTCAGCCACGCCCGACTTACCGAATCCTGCGAGAAGTGCCTCTGCGATCTATGCGGCAGACAACTGTCGTCCAAGAAAGCCCTGATACAGCATATGCGCGGCCACACTGGCGAGAAGGTCGCCGAGTGCGACATTTGCGGCAAGAGCTTTTCCAAGTGGGACAATCTGCGCGTTCACCAGAGGATACATACTGGGGAGCGGCCTTATCTGTGCTCGGTGTGTGGCAAAGGATTCGCACAGAGGACCTCGCTCGTTCATCACATCAGGATACACAACGGGGAGAAGAACTTCAAGTGCGAGGAGTGCGGCAAGGCCTTCGTAGCTGCCTCTCTGCTGAGGAAGCACGCGAAGGTTCACGATAGGGGATGA
- Protein Sequence
- MSENRIKKLTILVERRKTTLRPARTRTVLDASPPKAKPPRTRAVRTRATKVSQKLEQNNRTATVPPKKARVEEVTSSLGTVKVELFVCAKCQLTFPDRDSLKEHSKSHTYCCDHCDMSFRLRKQLRKHISEAHKSVAQYVCNECESVFKCRQSLREHFVRKHTEGFRFACEACGKKFKMKSDLYMHVQSIHSDEREAVCDVCGKTYRNGFALKKHLAHAHNQRPFACEICKRRLATKESLEQHNLLHLRKERAVCQVCGKTFSGNDALKKHMRIHTGVRPFPCKVCGKAFRRQNTHKQHLLTHTGQRPYVCDICGKTFTQKPGLITHRKKHPGPLPPLPAISIDYVIADLMEKTGKTTHIDDALSSSSTTTTITTTTIALKPSTSKTRSQHTCELCQTTFPRFADLVTHLRHLHGIERPVVCDICGRSFCSPWSVGRHKRIHEAEKRFSCDLCDYSCRQKSNLVIHRRRHAKNYTHRCDVCGSGFMQRTKYLEHKTLHEGSGANHKCKECDKVFNYKRNLVAHIRLCHPEMCNTGAPLLECAYCPQSFTTEVNLKRHLKFSHARLTESCEKCLCDLCGRQLSSKKALIQHMRGHTGEKVAECDICGKSFSKWDNLRVHQRIHTGERPYLCSVCGKGFAQRTSLVHHIRIHNGEKNFKCEECGKAFVAASLLRKHAKVHDRG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -