Taio102917.1
Basic Information
- Insect
- Torymus aiolomorphi
- Gene Symbol
- znf711
- Assembly
- GCA_036365515.1
- Location
- CM070876.1:168740107-168754157[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00098 0.47 13.7 0.2 1 22 42 65 42 65 0.96 2 18 0.00049 0.24 14.7 0.8 2 23 74 96 74 96 0.95 3 18 0.0023 1.1 12.6 0.2 1 21 116 138 116 139 0.96 4 18 0.2 94 6.5 1.5 2 23 148 170 147 170 0.96 5 18 0.046 22 8.5 1.1 1 21 190 212 190 213 0.97 6 18 0.11 54 7.2 0.5 1 23 221 245 221 245 0.95 7 18 0.0019 0.92 12.8 0.5 1 21 273 295 273 296 0.97 8 18 1.7 8.4e+02 3.5 0.4 5 21 308 324 296 325 0.85 9 18 0.00035 0.17 15.1 0.1 1 22 411 434 411 434 0.97 10 18 0.039 19 8.7 1.8 2 23 443 465 443 465 0.96 11 18 0.016 7.6 9.9 0.2 1 21 485 507 485 508 0.96 12 18 0.2 94 6.5 1.5 2 23 517 539 516 539 0.96 13 18 0.046 22 8.5 1.1 1 21 559 581 559 582 0.97 14 18 0.11 54 7.2 0.5 1 23 590 614 590 614 0.95 15 18 0.00015 0.074 16.3 0.9 1 20 670 691 670 693 0.94 16 18 0.00068 0.33 14.2 1.3 2 23 702 724 702 724 0.97 17 18 1.9 9.2e+02 3.4 0.7 1 20 743 764 743 766 0.91 18 18 1.6 7.5e+02 3.6 3.2 2 23 775 797 775 797 0.97
Sequence Information
- Coding Sequence
- ATGGAAAGATCGAGTCCACCCCCACGTTATCACACAGGAGACTTGTTCTGTGTTGATGGTGCAGCAGCATCAATAAATTCCAGTGAGCTTCAAAAAGACGTTCCAGACGACGTATCGACACGGTACAAGTGCCCGAACCCGGGTTGTAGGCGGTCATACGCCACCAAGAAATCCTTACAAGGTCACGTGCGCAGGATATGCCAAAAGCTGCCAACGGCCAAGTGTCCGTACTGCCCTTATAAGTACCAAGACAGCTCCAAAGTGCGCCGACACATTAAGTTTGTACACAAGGGGATGGAGGTCCGTGTCATTAAGATCCGGAAAAAAGAGGGACCAAGAAAGACGTTCAAGTGTCCGAACCCGGGTTGTAGGCGGTCGTACGACACGGAGAAATCCTTGTCCCGTCACGTCCGCGGAACATGCCAGAAGCCGCCAACGTCCAAGTGTCCGTATTGCTTTTATAATTCTCCCCGAGGCTGCGACGTGCGCAAACACATTAGGAACGTCCACAAAGGAAAGGAAGTCCGTGTCATTCCGATCAAAACAGAAGTGGTTCCAATAAAGTCATTCAAGTGCCCGAACCAGGATTGCTCCCGCGAGTACAAGTTGGAAAAAAGGTTACAGAAACACTTGCGCTTCGAGTGCCAGGTACCCTGTGCTTTCGAGTGTCCGTACTGTCCTCATTATCGCTCGGCTCTTAGCTCCAACGTGGCCAGGCATATCAAGAAGGCGCATCCGGGCATGGAAACCAAAGTGGTTGAACTTAGAACAAAGCAATATGTCATTTTCGAATTTTCAGACGCAGCATTCAAGATGTACCAATGTCCAAACGCAGGCTGCGGACGAGAGTATAAGTATAGGAAGTACATAAACAAACATCTGCGACACGAGTGCCAGCTACCAGAAAAGTTGAATTATGTTCATTGCCAGTTTGACACTGCCTATCGGCGGAATTTGGTCAAGCATATTCGAAATAAGCAGGAAAGAAGTTCCGACGAAGTATTAACAAAGTCAAGCAATCATACTATCATTGAAATAGAAAGATCAAGTCAAGATCAAGattCCTTTGAAATCTTCGAAGAGCCAATTACTGATCCTCTAGGAAAAATGGAAAGATTGGGTTCACTTCCAAGTGATCACACAGGGGATTTGTTCTGGAATGACGATACGACGACATTAATGAATCCCACTGAGCTTCAAAAAGGTGTTCCAGACAACGAATCGACATGGTTCAAGTGCCCGAACCCGGGCTGTAGAAGGTCATACGCCACCGAGATATCCTTGCAGAATCACATGCGCAGGATATGCCAGAAACCGCCAAGGGCCAAGTGTCCATACTGCTTCTATAAGGCCCACCAAAGCTCCGATGTGCGCAGACACATTAGCAGTATGCATAAGGGAAAAGAAGTCCGTGCTATCAAGATCAAGAAAAAAGAGGTGCCAAAAAAGACGTTCAAGTGCCCGAACCCCGGTTGTAGGCGGTCGTACGACACCGAGAAATCCTTGTACGATCACGTGCGTCAGATATGCCAGAAGCCGCCAACATCTAAGTGTCCGTATTGCTTTTATAATTCTCCCCGAGGCTGCGACGTGCGCAAACACATTAGGAACGTCCACAAAGAAAAGGAAGTTCGTGTCATTCCGATCACAAAAGAAGTGATTCCAATAATGTCATTCAAGTGCCCGAACCAGGATTGCTCCCGCGAGTACAAGTTGGAAAAAAGGTTACAGAAACACCTGCGTTTCGAGTGCCAGGTACCCTGTGCTTTCGAGTGTCCGTACTGTCCCCATTATCGCTCGGCTCTTAGCTCCAACGTGGCCAGGCATATCAAGAAGGCGCATCCGGGCATGGAAACCAAAGTGGTTGAACTTAGAACAAAGGAAAAATCCACGCACAAAATATTTCCAGGTTATCACACAGGGGACTTGTTCTGTATTGATGGTGCGGCGGCATCACTGAATCCCAGTAAGCTTCAAAAAGACGTTCCAAATGACGAATCGGCACCATACAAGTGTCCAAATCCGGATTGTGGACGGTCGTTCGCCACCGAGAAATCCTTGTATCATCACGTGCACAGGGTATGCCAAAAGCCGCCAACGGCCAAGTGTCCGTACTGCCCTTATAAGTACCACGACAGCTCTAAAGTTCGCCGACACGTTAAGGTCGTGCACAAGGGGGTGGAGTTCCGTATTAAGATCAGGAAAAAAGAGATGCCAAGAAAGTTATTCAAGTGCCCGAATCTGGGTTGTAGGCGATCGTACGACATCAAGAAATCCTGGTACCAACACGTGCACAATGAATGCCAAAAGCCGCCAACGGCCAAATGTACGTACTGCTCTTATAAGGCCCACGAGAGCTCTAAAGTGCGCACACACATTAAGAGCATGCATAAGGGAATGGAGGTCCGTATCATTCAGATCAAAGAAAAAGATGgaacattaaaagaaaatgcaGTGGAACGAGAGGTTTTGGTGAATTCGGAGATGCACTCTGCAGAGTAG
- Protein Sequence
- MERSSPPPRYHTGDLFCVDGAAASINSSELQKDVPDDVSTRYKCPNPGCRRSYATKKSLQGHVRRICQKLPTAKCPYCPYKYQDSSKVRRHIKFVHKGMEVRVIKIRKKEGPRKTFKCPNPGCRRSYDTEKSLSRHVRGTCQKPPTSKCPYCFYNSPRGCDVRKHIRNVHKGKEVRVIPIKTEVVPIKSFKCPNQDCSREYKLEKRLQKHLRFECQVPCAFECPYCPHYRSALSSNVARHIKKAHPGMETKVVELRTKQYVIFEFSDAAFKMYQCPNAGCGREYKYRKYINKHLRHECQLPEKLNYVHCQFDTAYRRNLVKHIRNKQERSSDEVLTKSSNHTIIEIERSSQDQDSFEIFEEPITDPLGKMERLGSLPSDHTGDLFWNDDTTTLMNPTELQKGVPDNESTWFKCPNPGCRRSYATEISLQNHMRRICQKPPRAKCPYCFYKAHQSSDVRRHISSMHKGKEVRAIKIKKKEVPKKTFKCPNPGCRRSYDTEKSLYDHVRQICQKPPTSKCPYCFYNSPRGCDVRKHIRNVHKEKEVRVIPITKEVIPIMSFKCPNQDCSREYKLEKRLQKHLRFECQVPCAFECPYCPHYRSALSSNVARHIKKAHPGMETKVVELRTKEKSTHKIFPGYHTGDLFCIDGAAASLNPSKLQKDVPNDESAPYKCPNPDCGRSFATEKSLYHHVHRVCQKPPTAKCPYCPYKYHDSSKVRRHVKVVHKGVEFRIKIRKKEMPRKLFKCPNLGCRRSYDIKKSWYQHVHNECQKPPTAKCTYCSYKAHESSKVRTHIKSMHKGMEVRIIQIKEKDGTLKENAVEREVLVNSEMHSAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -