Taio028398.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Torymus aiolomorphi
Gene Symbol
-
Assembly
GCA_036365515.1
Location
CM070873.1:257675960-257679065[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.016 7.9 9.9 0.3 6 21 12 27 6 28 0.86
2 14 3.8 1.8e+03 2.4 0.0 2 21 34 53 33 54 0.90
3 14 0.14 65 7.0 0.2 1 12 225 236 225 245 0.88
4 14 0.14 68 6.9 0.8 1 20 364 383 364 385 0.94
5 14 0.00015 0.073 16.3 0.4 2 23 390 411 390 411 0.98
6 14 0.054 26 8.3 3.0 1 23 422 444 422 444 0.95
7 14 0.12 60 7.1 0.2 1 23 463 484 463 484 0.93
8 14 0.0074 3.5 11.0 0.0 2 23 490 511 489 511 0.95
9 14 5.8e-05 0.028 17.6 4.8 1 23 586 608 586 608 0.99
10 14 6.5e-06 0.0031 20.6 4.0 1 23 614 636 614 636 0.96
11 14 0.00015 0.073 16.3 4.6 1 23 642 664 642 664 0.98
12 14 8.3e-06 0.004 20.3 0.8 1 23 670 692 670 692 0.98
13 14 0.00011 0.053 16.7 0.2 1 23 696 718 696 718 0.99
14 14 0.00011 0.055 16.7 0.2 1 23 726 748 726 748 0.97

Sequence Information

Coding Sequence
ATGGGTTCGATGACCCTGATATGTCCTATGTGCTGCGGAGAGACTTTTAATAATTCGGAGTCTCTCAAATATCATTTACTGAGTATGACTGATAACTTGTATTGCCCTGGATGTGCATTGAGAACATACTCCGTGGCTGCATTGATACAGCACTTAGATACTTGTGGGAAGGATTCAGAGCAAGAGGAGCTGCAGCAAAAAAATAGTCAAACTGATATTAATGAAGATAAAGTGGGACCAGATATTTTAATGGATGACGATGATGATCCTATGAGCGACAGTTTTTTGGCAACTGTCAATGAAGAAGGTATCATGATTGTTGGAGAAGGCAGGACTATTCAAGTGGATGAAAAtggtgataTTCAAGTTTTAGAGAAGGGTAGTCATTTGCAGAATGAATCTACATCTTTTGTTAATGTTAATGGTACAGATGATTCAAATGACAATACCATTAAAACTTCCAAAATTTCTGCTGCAGTTCAACATGATCACTCAATGGCAAAAAAAcctataataataaatgaatctAATGCTTCGGAATTCTTGAATAGCAACTCTGATTCTCTAATTAATATGTCACAAATCGATGATATTCAAATGTACCATtgtaatatacttataaaaaaagaatCTGAAATGATACCAGAAAATGACCAAGAAGCGGAAATCATGTACAGCTGCAGTACTTGTGGTTTGAGTTTTAGTTCTGTATTAGAACATATACAAGAGTATCATAATGGACAAGAAGTTATACTAGAAATGGCAGAACAACAACTAGATGAAATAGAAACATCAACAGATGTTGTAGTTCCAACTCCAGTTGTTACAAGCCCATTACCACCAAATAAAATTCTTCAAACGCCTATACCAACAAAACATAGACAGTCTATGAACACTTTAAGAACTGAAGAATGTGTTGACAGTGAAGGTAGACTGTACACAAGGAAAGTAGTACAAATTGAAAGATTTAGTGATAGAACCCCAGTTACTTTGTCATCAACAAAAGCTCCAATGATTGAAAAATTCTTCTCTAATGTTGAGGGAGTTAAGgtcAGGGATAAAAGCGTCACCGTTGCCCCAACTCGTATGTATAGGTGCAACCAGTGTCTAGAACAATTTGCAAAATTAGTCGATTTTCGTGTTCACGTGTGCCTTCAAGGGAACAACCGATGCGACCAATGCGAACAAACCTTTGCTACCGTAAAAGCGTTACAATTGCACATGAAAGTTCACGAAAACAGTGAATTTCCTTCACAAAAGATATTTCTGTGCACCGTATGTGGAACCCAATTCTTAACGCACAAAAGTCTACGACTGCATTCGCGGATGCATCTTCCCGTCAAAGCGCGACACGTGGACGCACCCGAAGGCACGGAAGAAGAGACATTCGATTGCAGCGAATGCGGCACAACGCTGTCGGAATCGTACAGAACAGCGCACATGGCCTTGCACACCGGCGACTCGATCACTTGCGCGGTGTGCAATCGGAAATTTGACTCTGAGGAAAGCTTGGCGATGCACGCGGCAGTGCACACCGAAGCTGCGAACATACAACATGGCTCGCCgaacgcagcagcagcagcagcagcgtccgCTGCGGCTGCGGTAGCGGCGAATGATCTCGTTGCCGCGAGCGGGCAAGATAACACCCAAGAAATGGAATTTATCAGTACGGGTATGCCACAGGCAATGGCTCCCGCGAACACCGCAACGACCGCGACGCAGGATCCTCTGGAGGTGCAGATACAGAAGCCTTATCAGTGCCAGCACTGCGGACGTAGGTTCACGCGGCCCCATGAAAAAGTGAAGCACGAGAGGATACATACGGGAGAGAAGCCGCATGCTTGCGAGGTCTGTGGTAAAAAATTCCGAGTATCTTACTGTCTGACCCTGCACATGCGAACGCACACGGGTGTGCGGCCATACGAGTGTCAACACTGTGGCAAGCGCTTCAAAGCTTCTTCAGTTTACAACCACCATCTTCTCACCCACGGTGACGAGCGCGCCTACACTTGTCCATTCTGCCCGAAGACCTTCAAGACGCGGGTGCAGCTCGCCGGCCACAAGAACAGCCACACGAAGCCGTTCCGCTGCACCGAGTGCTCGCGGCCGTTCGCCTCGCTCTACGCGGCACGTGCTCATATACAAACTCATCGGAAGGACAACAACCTGAAGTTTAGCTGTAACATCTGCGGTGCATCATACGGCCGTGCATTCGCCCTCAAGGATCACCTCAAGCAGCACGAGGGCGAGACTGCGCTGCTATTGCTGCCTGAGCCCGCGCACGAGGAAGAAGTAGTGCAGCAGGTCGAGTCTTTCTTTGGGAGTGAGGAACTTATTGTACCGCCGCCACGGGGTGAGCACATAATATACACGGTGCCCGACGATGACGAATAG
Protein Sequence
MGSMTLICPMCCGETFNNSESLKYHLLSMTDNLYCPGCALRTYSVAALIQHLDTCGKDSEQEELQQKNSQTDINEDKVGPDILMDDDDDPMSDSFLATVNEEGIMIVGEGRTIQVDENGDIQVLEKGSHLQNESTSFVNVNGTDDSNDNTIKTSKISAAVQHDHSMAKKPIIINESNASEFLNSNSDSLINMSQIDDIQMYHCNILIKKESEMIPENDQEAEIMYSCSTCGLSFSSVLEHIQEYHNGQEVILEMAEQQLDEIETSTDVVVPTPVVTSPLPPNKILQTPIPTKHRQSMNTLRTEECVDSEGRLYTRKVVQIERFSDRTPVTLSSTKAPMIEKFFSNVEGVKVRDKSVTVAPTRMYRCNQCLEQFAKLVDFRVHVCLQGNNRCDQCEQTFATVKALQLHMKVHENSEFPSQKIFLCTVCGTQFLTHKSLRLHSRMHLPVKARHVDAPEGTEEETFDCSECGTTLSESYRTAHMALHTGDSITCAVCNRKFDSEESLAMHAAVHTEAANIQHGSPNAAAAAAASAAAAVAANDLVAASGQDNTQEMEFISTGMPQAMAPANTATTATQDPLEVQIQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKKFRVSYCLTLHMRTHTGVRPYECQHCGKRFKASSVYNHHLLTHGDERAYTCPFCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHRKDNNLKFSCNICGASYGRAFALKDHLKQHEGETALLLLPEPAHEEEVVQQVESFFGSEELIVPPPRGEHIIYTVPDDDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01466525;
90% Identity
iTF_01466525;
80% Identity
-