Basic Information

Insect: Tortrix viridana
Gene Symbol: stc
Assembly: GCA_963241965.1
Location: OY725182.1:11616867-11636910[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2 2.9e+04 -4.5 1.6 15 19 623 627 622 627 0.81

2 13 0.038 5.5e+02 1.4 1.5 2 10 655 663 655 663 0.93

3 13 0.00018 2.6 8.8 20.3 4 19 671 686 669 686 0.93

4 13 4.3e-08 0.00063 20.4 9.7 1 18 722 739 722 740 0.98

5 13 7.5e-05 1.1 10.0 11.8 1 19 781 799 781 799 0.98

6 13 6.5e-05 0.93 10.2 11.3 1 19 840 862 840 862 0.87

7 13 2 2.9e+04 -4.5 1.3 6 10 892 896 892 897 0.93

8 13 0.01 1.5e+02 3.2 7.7 1 11 902 912 902 913 0.95

9 13 0.16 2.3e+03 -0.6 0.5 4 10 917 923 916 925 0.92

10 13 9.4e-05 1.4 9.7 15.2 3 18 931 946 919 947 0.88

11 13 0.062 8.9e+02 0.7 14.7 9 18 993 1002 986 1003 0.91

12 13 1.5e-08 0.00022 21.8 14.8 1 17 1039 1057 1039 1063 0.84

13 13 0.00015 2.1 9.1 5.5 1 13 1069 1080 1069 1081 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2	2.9e+04	-4.5	1.6	15	19	623	627	622	627	0.81
2	13	0.038	5.5e+02	1.4	1.5	2	10	655	663	655	663	0.93
3	13	0.00018	2.6	8.8	20.3	4	19	671	686	669	686	0.93
4	13	4.3e-08	0.00063	20.4	9.7	1	18	722	739	722	740	0.98
5	13	7.5e-05	1.1	10.0	11.8	1	19	781	799	781	799	0.98
6	13	6.5e-05	0.93	10.2	11.3	1	19	840	862	840	862	0.87
7	13	2	2.9e+04	-4.5	1.3	6	10	892	896	892	897	0.93
8	13	0.01	1.5e+02	3.2	7.7	1	11	902	912	902	913	0.95
9	13	0.16	2.3e+03	-0.6	0.5	4	10	917	923	916	925	0.92
10	13	9.4e-05	1.4	9.7	15.2	3	18	931	946	919	947	0.88
11	13	0.062	8.9e+02	0.7	14.7	9	18	993	1002	986	1003	0.91
12	13	1.5e-08	0.00022	21.8	14.8	1	17	1039	1057	1039	1063	0.84
13	13	0.00015	2.1	9.1	5.5	1	13	1069	1080	1069	1081	0.95

Sequence Information

Coding Sequence: ATGTCTCAATGGAACAATTCCTACTCTTACAACCAGCAATACCAAGGCTCGGGTACCTGGGACGGTGAATTAAGCAACCAGTACACAAACCAACCTTACTTCCCTACCAACCAGCAAACATACGAGCCAAGCAACCAATATGTAAATTTTCAGGAATTTCTGTCCCAGATGCAGAACAGTAGCGCAGGCGCATCAAGTTCCGCGACATACAACAATGCTCAATATCCAAATTACCCCAACAATCAGTATGATTACCAAACCACTCCATCAACTTCTCAAAATGCTAGTTACCTATCAGCAAGCTCAAATATTGTAAATGGTGCAGAAGGATACCAAACCACTGCACAAAGCCAGAATAAAGGTACATCTGACACCAACTATGACAACCACATGGTCTTCAAATCCAATCTTACACCAACCGCTATTGAATTTGTGCCAAAGGGGATGTTGCCAAACCAGGATTCAGGGGCTCTAAACTCTAATTCTTTACATGACACTTCCACTTATAACGGAGTTGTAGAATCTAAGAGCAAACACTTGGGTGATAGAAACTGGAGAGAAAAGCAGTCTTCCCAACCTAGTAGTTCTCGTagttataatgataataaaagtgAACAAGAATCAGGAGGAAAAACAGAGAAAGACCGCCCCAATAGTTCTCATACTTCAAATGAATCTAAGAATGATCAAGATTCAAAGAAGAAACCAGAAAAAGATCGTAGGCGACGgaataataatttaagtattCAAAAAGATTccagtaataaaagtcaagagcATGGTAGCCTAAATGAACCAGAAGGTGGTGACTATGAGTCCAACACTTATAGCCATGACTCCAACAAGCATAGCACAGAGTTTAACAACCGCAATTATGAACCACACAGTAGAAAATTTGAACCAAATAGTCGTGGTACCAGGAAAAACGAATCTAGCCGTAACTTTGACAGTAACAATCAAAGTAATGACcctagttataaaaataatgacttggaCCGTAATAATGATCATAATGACCAAACCCGTAACAATGATTCTGATAGCCGACAATATGAGGCTGGTAATCGCAATTACGATAACAATGGCCGAAATTATGACTCGAGAAGACGTAATTATGACTCAAATAATCGCCACTATGAAGGAAATAGTCGTAATTACGATTCTAACAGTCGCAACTATGAGCCTACTAGTCGTAATTATGATTCAACATCTGCAAGTCGCAACTCTGACTATAACCGCAGGACTGATTTCAATGGGCGTGACAGTGATTACAATAGCCGAAATAACGACTACAATGGGCGTAACCAAGATTATAGTAGTCGCAATAATGATTACAATGGCCGGAACTATGACTCAAATAATCGGAATTACGAAAATAAGGGCCAAGGAAAGAATTCAAAGTCAAAGAATAAGGAACCTGATAACCGCACATTTTACAATAGTTCAGCTAACAAAAGCAGTCAGGATGTCAGAAGTGTAAGAGGTGAAAGAGGTGAGAGCTCAGGAAGGACTAGAAATTGGCCTGGAAGTCAAAGGGTCAGGCCAACTGAGAGAGTAGATGATGAACAATTTGCTAAAGGGTATTTGGATCACCGTGAAGACCGGTATTCAAAGGGATCTAGGTCAGAGGCCACATTTAGTCCCTTGAGAACTAGGAACAAGCAAGTAGATCAATGCAACACAGACATGACCCAACGGGAGCGTCTCTCGGAACAGCTGGACAAGGGTACCCTGGAGTGCCTGGTGTGCTGCGAGCGCGTGAAGCAGACGGACTCGGTGTGGTCCTGTGGGAACTGCTACCATGTGCTGCATCTGCGCTGCATCAGGAAGTGGGCCTTGAGCAGTGTTATAGAGGGCAAATGGCGCTGCCCTGCGTGCCAAAACACGAGCGACGCGATCCCGACGGAGTACCGCTGCATGTGTGGCGCCGTGCGCGCGCCGGAGTACCagcgcggcggcagcggcgcccACACCTGCGGACAGGCGTGCCAGCGGCCGCGCTCCTGCCCGCACCCCTGCACGCTGCCGTGCCACCCCGGGCCCTGCCCGCCGTGCCAGGCCACCGTCGTCAGAAAATGCGGGTGCGGCGCGGAGAGCCGATCCGTGCTGTGCAGCAGCAAGCTGGCGCAGGAGTGCGGGCGCGAGTGCGCGCGCACGCTGCCCTGCGGCGTGCacgcctgcgcgcgcgcctgccACGAGGGGCCCTGCGACGACTGCGCGCAGGCCGTGGACCAAGTGTGCTACTGTCTCGCCGCGAAATCCCGCTCGGTGCCGTGCACGGCGGAGAGCGGGCGCGAGGGCTCGTGGTCGTGCGGCGCGGCGTGCTCGCGCGTGCTGGCGTGCGGCGCGCACGTGTGCCGGCGCGCGTGCCACGCGCCGCCCTGCGCCCCGTGCCAGCTGCTGCCCACCGCCGTGCTCAGCTGCCCTTGCGGACGCACCAGATTGGACAAAGACGCGCGCAAGTCGTGCACGGACCCGGTGCCTCTGTGCGGCAACATCTGCGCCAAGCCGCTGGCGTGCGGGCCGGCCGGCGACAAGCACTTCTGCAAACTGGACTGCCATGAAGGCCAGTGTCCCGCCTGCCCGGAGAAGACTCTGCTGCCGTGCCGCTGCGGACACTCCAGCCGCGAGGTGCCGTGCGCGGACCTGCCGGAAATGTTGGACAACGTGTTCTGCCAGAAAAAGTGCAACAAGAAATTGTCGTGCGGGCGCCACCGCTGCCGGGCGTCGTGCTGCAACGCCGCGACGCACCGCTGCGGCGTCGTGTGCGGCCGCTTGCTGGCCTGCCAGCTGCACCGCTGCGACCAGTTCTGCCACACCGGCCACTGCGCGCCTTGCGCACGCGCCAGTTTCGAGGAGCTGGCCTGCGAATGCGGCGCCGAAGTGATTTTACCACCGGTTCCTTGCGGGACCAAGCGGCCCGCGTGCTCGGCGCcgtgccgccgcccgcgcccctgCCAGCACCCCCCGCACCACGCCTGCCACCAGGGCGAGTGCCCCCCCTGCGTCGTGCTCACCGCCAAGCGCTGCCACGGCCAGCACGAGGAACGCAAGACTATTCCGTGTTCGCAAGAGGAGTTCTCCTGCGGCCTACCGTGTGGGAAGCCTCTACCTTGCGGGAAACACACCTGCCAGAAGATTTGCCACAAGGGACCGTGCGACACCGGCAAATGCACGCAGCCCTGCAACGAGAAGCGCCCCAGCTGCGGGCACCCGTGCGCGGCGCCGTGCCACGccggggcgggcggggcgggcggggcggggcgcgcgggcgcggggggctGCCCGAGCGCGGCGCCGTGCCGGCGGGCCGTGCGCGCCACGTGCCCCTgcggccggcgcgccgccgacCGCGCCTGCCACGACAACGCCAAGGACCACGCCAAaaTAATGAGTGCTCTGGCCGCGTCGAAAATGCAAGACGGCGGTTCGGTGGACCTCTCCGAAGTGCAGCGTCCCTCGGCTATGCTCAAGACACTGGAGTGTGACGACGAGTGCCGCGTGGAGGCGCGCACGCGCCGCCTGGCCCTCGCTCTACAGATCCGCAACCCCGACGTGTCGGCCAAGCTCGCGCCGCGCTACAGCGAGCATGTTCGCGCCACCGCCGCGCGCGAGCCTTCGTTCGCGCTCGCCGTGCACCAGGCGCTCACCGACCTCGTGCAGCGGGCTAAGAAGTCGAAACAGAAGACGCGCGCCCACTCGTTCGCGTCGATGAACTGGCAGAAGCGTCAGTTCATCCACGAGCTGTGCGAGCAGTTCGGCTGCGAGAGCGTCGCGTACGACGCCGAGCCCAACCGCAACGTGGTCGCCACCGCCGACCGCGAGAAGTCCTGGCTGCCGGCGATGAGCGTGCTGGAGGTGCTGGCGCGCGAGACGGGCAAGCGCCGCGTGCCGCCGCCCGtgctgcgcgcgccgcccgcgcccgccgccgccgccgccaacaAGCCGGCCAGCGGCTGGGCGACACTAACGTCGACCAACGcgtgggcggcgcgcgcgcagaagAAACCTGATGTACCTGCGCCGCCCAAGATAGACTACTTCGACAACCCGCCCAACAACTAA
Protein Sequence: MSQWNNSYSYNQQYQGSGTWDGELSNQYTNQPYFPTNQQTYEPSNQYVNFQEFLSQMQNSSAGASSSATYNNAQYPNYPNNQYDYQTTPSTSQNASYLSASSNIVNGAEGYQTTAQSQNKGTSDTNYDNHMVFKSNLTPTAIEFVPKGMLPNQDSGALNSNSLHDTSTYNGVVESKSKHLGDRNWREKQSSQPSSSRSYNDNKSEQESGGKTEKDRPNSSHTSNESKNDQDSKKKPEKDRRRRNNNLSIQKDSSNKSQEHGSLNEPEGGDYESNTYSHDSNKHSTEFNNRNYEPHSRKFEPNSRGTRKNESSRNFDSNNQSNDPSYKNNDLDRNNDHNDQTRNNDSDSRQYEAGNRNYDNNGRNYDSRRRNYDSNNRHYEGNSRNYDSNSRNYEPTSRNYDSTSASRNSDYNRRTDFNGRDSDYNSRNNDYNGRNQDYSSRNNDYNGRNYDSNNRNYENKGQGKNSKSKNKEPDNRTFYNSSANKSSQDVRSVRGERGESSGRTRNWPGSQRVRPTERVDDEQFAKGYLDHREDRYSKGSRSEATFSPLRTRNKQVDQCNTDMTQRERLSEQLDKGTLECLVCCERVKQTDSVWSCGNCYHVLHLRCIRKWALSSVIEGKWRCPACQNTSDAIPTEYRCMCGAVRAPEYQRGGSGAHTCGQACQRPRSCPHPCTLPCHPGPCPPCQATVVRKCGCGAESRSVLCSSKLAQECGRECARTLPCGVHACARACHEGPCDDCAQAVDQVCYCLAAKSRSVPCTAESGREGSWSCGAACSRVLACGAHVCRRACHAPPCAPCQLLPTAVLSCPCGRTRLDKDARKSCTDPVPLCGNICAKPLACGPAGDKHFCKLDCHEGQCPACPEKTLLPCRCGHSSREVPCADLPEMLDNVFCQKKCNKKLSCGRHRCRASCCNAATHRCGVVCGRLLACQLHRCDQFCHTGHCAPCARASFEELACECGAEVILPPVPCGTKRPACSAPCRRPRPCQHPPHHACHQGECPPCVVLTAKRCHGQHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCQKICHKGPCDTGKCTQPCNEKRPSCGHPCAAPCHAGAGGAGGAGRAGAGGCPSAAPCRRAVRATCPCGRRAADRACHDNAKDHAKIMSALAASKMQDGGSVDLSEVQRPSAMLKTLECDDECRVEARTRRLALALQIRNPDVSAKLAPRYSEHVRATAAREPSFALAVHQALTDLVQRAKKSKQKTRAHSFASMNWQKRQFIHELCEQFGCESVAYDAEPNRNVVATADREKSWLPAMSVLEVLARETGKRRVPPPVLRAPPAPAAAAANKPASGWATLTSTNAWAARAQKKPDVPAPPKIDYFDNPPNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -