Tvir025170.1
Basic Information
- Insect
- Tortrix viridana
- Gene Symbol
- -
- Assembly
- GCA_963241965.1
- Location
- OY725199.1:4750907-4764567[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.8 2.3e+02 3.2 0.5 2 13 236 247 236 252 0.86 2 13 6.2 4.9e+02 2.2 2.3 1 20 258 277 258 279 0.92 3 13 0.78 63 5.0 1.5 1 23 304 327 304 327 0.93 4 13 0.0043 0.34 12.1 1.3 1 21 364 384 364 385 0.93 5 13 5.1 4.1e+02 2.4 2.1 1 23 737 759 737 759 0.85 6 13 4.1 3.3e+02 2.7 0.1 2 23 765 786 764 786 0.94 7 13 0.42 34 5.8 2.6 3 23 885 905 884 905 0.95 8 13 0.00093 0.074 14.2 1.2 2 23 921 942 920 942 0.96 9 13 5.6e-07 4.4e-05 24.3 2.1 1 23 948 970 948 970 0.98 10 13 9.3e-05 0.0074 17.3 1.7 1 23 975 997 975 997 0.98 11 13 0.0023 0.19 12.9 3.5 1 23 1003 1026 1003 1026 0.97 12 13 0.15 12 7.3 0.7 1 20 1033 1052 1033 1052 0.94 13 13 0.042 3.3 9.0 1.7 3 22 1065 1084 1064 1086 0.88
Sequence Information
- Coding Sequence
- ATGTCTGAAAACGGCAGAAAAAGGTGCAGAAAGACTAAATTAGTGCCGCGGGATTGTGCCGAATTTATTGAAGATGATAGCTTTTTGCAGGATCCTCCGTACAAGAAACTTCTTCtccagaaaataaaaaaagagccACTCGACCAAGAGGCTTCATCAGCTTTGCAGTTCTCTGTCAAAGTTGAGGTCGAGGACATCGCAGACACCCTCCCTGACGAAGATCCTTCAGACTATATGCAGTATCTCTTCAGTTTGTCCAAGGAACCCAAATCCAAACTTGCCCAAGAGAGTTCTGGAAAGTCCTATGATGAAGAGGTTTATATTATGgatgccaataaaatacatagACTGCTGCCCGCACTCCTCAGAAAGTACCCATATGAGAAAGAAGCTGTTGTAGCCACCAGGAATTCATGGGGGAAGCTGTTTTTTGAGATGGCAGAGGAATTTCCCAGAAGTTCACAGGATAGTGAGTTACAACAGACAATAAATGAGTGGAGGGCGTGGTATCCACGACAGAGAGAAACCCCTTTCTGCTACAAATGCTACGTGTGCTCGCATGCTTGGTGGAATTTCATGGACTTTAAAGATCACATTAAAAATCACCCAGATTCAAACGTCAAATTGGAAATCGTTCAACACGAGTGCAACGTTATATGCTTTGAGGACGAACAGCCTGCCGTTAGAGATATATTTGTTGAGGGCAAGTGTTTAAAATGCGGCCAGAATTTCAAAGATCATCTGGAGAACAAGAGGTTCtcggattattattattattgcatacATTGCAGTGAGAAGTTTCATACATGCAGCGTTTTGGCCAAACATGTGGGAGTGTGTGACAAAAATCCATTACGTACAACTGAAGTTATAAACGATATAATAAACAGTGAAAATAATGCCACAGATTATAATTGCCAAATCTGTGACACAGCCTTTTTGAATAAGCTAGATAAAATGAATCACCTTAACGTATGCCACAGCGTCCGCTCAGACGAGCCGATTGTTACATATTGTAAGATATGTCGACTTTGTGAATTGCCTTATTTCCTCTTTTGTTTCCACATATGTCCAAAGAGGAACATACTCCATCCGTGCAAACACTGTGGTGTCAAATTTCAGAACAAGCAAATGTTAGAGCTTCATACGAAAGTGTCAAGGAAACCGGTTCAGTGTTATGTTTGTGATAAACATCTGTTAAAAAAGTGCATGGAAGTAGAACACTACGTGTCCCACAGTACTAACTTCCAAGTGATGTATAGGTGTTTGAAATGTAAGAAGATCAAGTTGTTCCAAGGAGAGGACTCCGTGAAGAATCACCGCATGAAGGCGCACAAGCGGTTTGATAACCGCAGGCCTATTTGGGAGAAGATAATCGTCCCGAAACTGATGCTGGACCAGTGCCTGTTTAATCCCAATGCGCGGGCGCGGAAGAGTAAGTTCCCATTGTTTTTACCCCCGGCGCAAAAATCAGTTCAAAGGAAAGAAAACAATTTCACCATTTCTGAAGACGAGgaatttgttataaataaatctaatgaACCAGCCAAATATTATAAGAAACCTAAGGAGACTAACTTGGAAAAAGTTCAAGATGTCTCCAAAATACTTGAACAAATTACAGAAATTGTGGACTTGAAACCGGACATTGTAaaagttaaagaagaaaaagatGATACTATAGAGCCTTCAGGTGGAACAGAAGAGTCTAATGAAATAGAAGCACCAAGATTGAATACAGAAGAATTGCAAATAGATCCAAATGTCTCCAAAGTATTCCAGGTATCGAAACTGAATGAAAATACAGATGTATTGCAAATAGATCCAAAAGTCTCCAAAGTATTCCAGATATCGAAACTGAATGAAGAATACAAGAAAGCAACTGAAGGGTTTCAGAACAATTTGgcttttgaaaatattatagttaaacatgaaattaaagAAGAACCGGCAGATTTCGAGGATGatttaatcattattaatcAAATGGAAGACACTACTGTTAAACAGGAAACGAGTAGTGATCAATCAGACGTAAGTATTCTCAAATTAGAACCtgaagttattttaaaagcaGGCTATAGGAAAAGGAAGGTATATAAGTGTACCAAGTGTGATTTTGAAAGTTTTCACAAAGAATATAAACAACATGTTAACAATCATTGCATGAAAGTTACTAGCGAGCCTACGTCGCCTTcggaaaataatttcaaatgtaCCAAATGTAACGACAGTTTTGATACAATAAAAAGATACGCGCTGCATTTTGTGAAACATAATTGTCACTATATGTCTTGTCCTAAATGCAGTGGCGAGTTCGACAGTATCACTAAACTGATACCACATCTGAACAGTCATATCAAGAGTCAGTTCTTAAGAATACAACAAATAAGTGATAACGAACCGGAACATCAGAAGAAGGATTTTCAATGTGTTACGTGCAGGAAAGTGGTTTTTGTGAAGGATATGTTTGAACATTGGGAGGGGCACTTGGAGATTGTTGGTGAAAAGGAGAAAGTGGTGGTCAAAGTGGATACTGGCAAGACGATAGAGAAGGGAGATTACGCTTTGGAGCCGGAAGTGTTGAAGAAGCTTCTAGaactcCTCCAAAACACCACTGTCCCAATAAGCtttccaaagaaaataaaaatctgttTCGTATGTCAACGAAATTTTGAGAGACAGAACGATTGCAAGAGGCACTTGATTGAGCATTTACTTGAAGACGCTTTGGCCAAAATAGTTGTGTCGGGACAACTGAAATGTCAATTGTGCAAAGAACTATTCAGGAAACCGGATGGTTATAAGAAACATATGAGAGACCACGGCTCTCTGCCGATATATCAGTGCGCGTTGTGCGACAAAACTTTCAGTGATTCAAGCAATTTCACTAAACATAAGAAAATACATAATTCAAAGGCGTTCGTTTGTGATTTATGCCATAAGAAGTTCCAGATTAAAGCGTCACTGGAGAAGCATATGCAGATTCACCTATCTACCGACCCTTACCATTGCGATCTATGCGACCGCATCTTCTACGATCGCGCCTTCTTCAACCGCCACCGCCGCCAGCTCCACGAGAAATCTAGCCTTCGCTTCAAATGCTTCGTCTGCAAGAAAGGCTTCGAATCCCTCAAGGATAAGTGGGACCACATGTGGGATGTCCACAAACACAGGACCAACAAAGCCGACTGCCCAATATGCAAAAAGGGCTACAGAAAATATTCTGACGTCAGAAAACATTGTCAAGTTGAACATAGCTTGAATATTACCCTAGAAGGCATCATAGAACTCATGGCTCAGTATAAGAAGGTTCGAGGTGAAGATTATTTCGAAGATAAAAGTGATGTGCAAGGTGTGAAGAGGAATGAAGTTAATAGTGGTGAAAGTAGTGTTGAAGTTAGTGTTGAAAATGGTGATGAAATTGAAAATGGTGAGGGTTTTGGTGAAGTTGAAAGTGATGATGATGTGTTATTGATAGAGGAGGAGAGGGAAACTCTGGTTATATATGACGACGACGTCCCGGCGTGA
- Protein Sequence
- MSENGRKRCRKTKLVPRDCAEFIEDDSFLQDPPYKKLLLQKIKKEPLDQEASSALQFSVKVEVEDIADTLPDEDPSDYMQYLFSLSKEPKSKLAQESSGKSYDEEVYIMDANKIHRLLPALLRKYPYEKEAVVATRNSWGKLFFEMAEEFPRSSQDSELQQTINEWRAWYPRQRETPFCYKCYVCSHAWWNFMDFKDHIKNHPDSNVKLEIVQHECNVICFEDEQPAVRDIFVEGKCLKCGQNFKDHLENKRFSDYYYYCIHCSEKFHTCSVLAKHVGVCDKNPLRTTEVINDIINSENNATDYNCQICDTAFLNKLDKMNHLNVCHSVRSDEPIVTYCKICRLCELPYFLFCFHICPKRNILHPCKHCGVKFQNKQMLELHTKVSRKPVQCYVCDKHLLKKCMEVEHYVSHSTNFQVMYRCLKCKKIKLFQGEDSVKNHRMKAHKRFDNRRPIWEKIIVPKLMLDQCLFNPNARARKSKFPLFLPPAQKSVQRKENNFTISEDEEFVINKSNEPAKYYKKPKETNLEKVQDVSKILEQITEIVDLKPDIVKVKEEKDDTIEPSGGTEESNEIEAPRLNTEELQIDPNVSKVFQVSKLNENTDVLQIDPKVSKVFQISKLNEEYKKATEGFQNNLAFENIIVKHEIKEEPADFEDDLIIINQMEDTTVKQETSSDQSDVSILKLEPEVILKAGYRKRKVYKCTKCDFESFHKEYKQHVNNHCMKVTSEPTSPSENNFKCTKCNDSFDTIKRYALHFVKHNCHYMSCPKCSGEFDSITKLIPHLNSHIKSQFLRIQQISDNEPEHQKKDFQCVTCRKVVFVKDMFEHWEGHLEIVGEKEKVVVKVDTGKTIEKGDYALEPEVLKKLLELLQNTTVPISFPKKIKICFVCQRNFERQNDCKRHLIEHLLEDALAKIVVSGQLKCQLCKELFRKPDGYKKHMRDHGSLPIYQCALCDKTFSDSSNFTKHKKIHNSKAFVCDLCHKKFQIKASLEKHMQIHLSTDPYHCDLCDRIFYDRAFFNRHRRQLHEKSSLRFKCFVCKKGFESLKDKWDHMWDVHKHRTNKADCPICKKGYRKYSDVRKHCQVEHSLNITLEGIIELMAQYKKVRGEDYFEDKSDVQGVKRNEVNSGESSVEVSVENGDEIENGEGFGEVESDDDVLLIEEERETLVIYDDDVPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -