Tvir007433.1
Basic Information
- Insect
- Tortrix viridana
- Gene Symbol
- ken
- Assembly
- GCA_963241965.1
- Location
- OY725174.1:16231992-16240132[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.13 11 7.4 0.9 2 19 501 518 500 524 0.92 2 11 0.018 1.4 10.1 2.4 1 23 538 561 538 561 0.96 3 11 0.023 1.8 9.8 4.0 1 23 566 590 566 590 0.92 4 11 7.7 6.1e+02 1.9 1.3 2 23 611 636 610 636 0.84 5 11 0.0024 0.19 12.9 0.3 2 21 642 661 641 662 0.96 6 11 3.3e-05 0.0026 18.8 1.2 1 23 724 745 724 745 0.98 7 11 8.4e-06 0.00067 20.6 2.1 1 23 751 774 751 774 0.97 8 11 0.0026 0.2 12.8 2.5 2 21 786 805 785 806 0.94 9 11 0.01 0.8 10.9 0.3 2 23 812 835 811 835 0.95 10 11 0.00019 0.016 16.3 3.9 2 23 843 864 842 864 0.97 11 11 0.0055 0.44 11.8 3.1 1 21 870 890 870 895 0.93
Sequence Information
- Coding Sequence
- ATGCTTTCACCAAGAGATGAGGATGACGATGACAGCCATCTCTGCATCAAATGCAATGCAACTATCATCGGTCTCGAAAACTACGTCAAGCACAGAAAAGAACAATGCGCCAAAACGAAACCGGTACAAAAAGTCGATCTACGTATTGATACTTTAGAGCCTACTTGTAATCTCGGAGCCGATGTCTTCTTCCAGTCCTTAGAACTTCAAAGTAGCGTCAAAAAGACGTCGTTGTCAAGACTAACACATCCTATTACGATTTCGAAAGCAAGCTTAGAgggaaaaaatgcattagtggTTGCATCTACGTCTCGAGATATACCAACAATGAGTCCGGTTGAAAGCAATTTTAGGGGTGAAGATTGGATTGGTGGACACAGTTTAAGAATTGGCAGCAATGAAGATAATCAGACTAAATTGATTAACGCTGTGGCTAGTATCAGTGGGGCTGTCAAAAAAGACATTCCTACATCTTCTTATAACATTGGACCTTTTAATGATTTTAAACCAGACGATGAATCTGACGAATCAGAAGATACTGAGGATGATGAAGAAGAGGATGCTCCAACGGGTGGCAAGTGGAAACCTCCTCCAAATTACACTGGTGGCAAATGGAGACCAGTGTCGCCAGAACAGGAAGAATGGGCAATGAGGGATGAACAGGAACATACTGGAGGAAAATGGAGACCCATTATGACTGATGCTAATGAGAGGGATGAAGATTACGATGCTCCTCCACCAGGACATACTAAAGGGAAATGGGTTCCAGGAGCCAATGAAAAATCGCAGATTATGCAAACGACTTTACAAACAAAAGGATTGGTACAGTATTGGTGTGGTCCGTGTAATAGAAGGTTGGGTTCCAGAGCGATTTATGAAAAACATTTAATGTCGAAATTGCATATGAAAAAAGTACTACCAGAAAATGAGCTAGAGTTTTCTGGACATCTAGAACCATTAAGACCAGTCGTAGTAAAACAAAACAGCCGAAAGTTGCGATCTATTACTAATGCTAATTCTCAGAAAAAGAAACTCACGGCTTCAAAAGTGAAAAACAATGAACTggacaaaaaaaagaaacgaaagCGGAAACTTCTTTTTGTTAACTGCCCTGGCTGTAAATCGAGAGTAAGGCAGCACTTAATGGGGAAGCATCTCATATCGCACTACCATTTTAGAAAGGCTTCAACGGTTCAATCCACAGTGTACCGCCAGTTGATTCTGAACAACATTGACGTCATTGTTCACCAATCACCTTTTCAATGCAGTCCTTGTAAATTCTACACGAACTGGCAGTCTCATTTCATGCGACATTGGTCTTCAGATGAACATGCTGAGAAGACATCATCCATGGACGGTAGATACTGGTGTTCCTTTTGTAAATTTGAAAGCGATACATCTGTTGAAATGCTTCTGCATTTATCGAGCCTTGAACACAGCGAGGTGGTCGCTGTTATTAACAGATCAATGCCTATTATCATTAGAAAGAAAAGCATTATAAAATGTGAGACGTGTTACAAAGAGTTTCGCTATAATGCTGAAATCATCAGACATTGTCAGATTACAGGGCATCAATTGACGTATACGGCTACAAATGATTATCAAGACCTCCATAACTGCCAGCAATGTACAGCTAAGTTTAAATCTTCTCTCACTTTGGCTGCTCACTTAAAGTCTTTTCACAAGCAAAAGTCGCACATGTGTCTTGTGTGTTCTCGAACGTTCTGTTCTTCAGAAGAAGCGAAGCGACACAGGAATACTTCAGAGCATAGACTAAGGAGGAGAGCCAATATGAGAGCTCGTGGCTTGCCAGTCAAAGAGATTAGTAAGAAGTGCCCATATTGCACCGATAAGAAAGTTGTTTTGAGCAATATTTTAGAGCTCAAGGACCATATTAGGCGAATGCATCCgaataataagaaaaagTGTCCAAAATGCGGCATGTCCTTCATTTTGCATCAGGAAGTAACGCGCCACATCAGAGCCAACGCCTGTCAGTTCCGCAACTGGCTCCCACCCAGCTCCTCCGGAAACTTCCAACTCTGGAACTGTAGCCAATGCCTCTTTACCACCGACTCCCAAGCTGAATGTTTCTTCCACGAAGTCCTTCACACCACTCCTTTGGAGGAAGCCTTAAGAGCTGGAGATAAGGAGAAGATTGTATTAAAATATGAGTGTCCTTTATGCCCTAAGAGGTTTAAGAAGTCTTCCCTTCGTTTGCATCTTCGGCAGCATACGCGTGAGCGGCCTTTTGTGTGTAAAGTTTGTGGGGCTAATTTCACGAGGAAGAGTAGTTTATGCAACCACGTACAGAAGGAACATGAGACATCAAAGGTTGAGAAAGGGCAAGAGAGTCAGTGTGGGAGGTGTAAAAAGAAGTTTTCCAGCAAGGAAGAACTTAACCTCCATTTATGCCAAGCAGCGGCAGAACTTAGCTGCCCTCACGAACAATGCGGCTACGTCGCATCGACTCCTACGCAGTTCGCTAAGCACTATGCGACTCATGGCGAGCGTCTGAAGCACCTGAAGTGTCCTCACTGCCCGTTCAAGTCAGACCAGAACAGCCATCTGAAGAGGCATTTGATCACACACGCTGGTGCCAAGCCATACAAATGTCCACATTGTGAATTTACATGCGGAAGTTTAGAAAACCTCCGCAAGCacgcgctgcgccggcgcctgcACGGCGGGCGGCCGCTGTACGGCTGCCGCGCCGGCGCCTGCGCGTTCGGCTGCGACTCGGCCGCCGCGCTGCGCGCGCACCTCGTGGCCGCGCACGGCGACCTGCACGACGCGCGCAGCGCGGTCGCCGCTGTCAAGAGGCACCTGATGGTcgactaa
- Protein Sequence
- MLSPRDEDDDDSHLCIKCNATIIGLENYVKHRKEQCAKTKPVQKVDLRIDTLEPTCNLGADVFFQSLELQSSVKKTSLSRLTHPITISKASLEGKNALVVASTSRDIPTMSPVESNFRGEDWIGGHSLRIGSNEDNQTKLINAVASISGAVKKDIPTSSYNIGPFNDFKPDDESDESEDTEDDEEEDAPTGGKWKPPPNYTGGKWRPVSPEQEEWAMRDEQEHTGGKWRPIMTDANERDEDYDAPPPGHTKGKWVPGANEKSQIMQTTLQTKGLVQYWCGPCNRRLGSRAIYEKHLMSKLHMKKVLPENELEFSGHLEPLRPVVVKQNSRKLRSITNANSQKKKLTASKVKNNELDKKKKRKRKLLFVNCPGCKSRVRQHLMGKHLISHYHFRKASTVQSTVYRQLILNNIDVIVHQSPFQCSPCKFYTNWQSHFMRHWSSDEHAEKTSSMDGRYWCSFCKFESDTSVEMLLHLSSLEHSEVVAVINRSMPIIIRKKSIIKCETCYKEFRYNAEIIRHCQITGHQLTYTATNDYQDLHNCQQCTAKFKSSLTLAAHLKSFHKQKSHMCLVCSRTFCSSEEAKRHRNTSEHRLRRRANMRARGLPVKEISKKCPYCTDKKVVLSNILELKDHIRRMHPNNKKKCPKCGMSFILHQEVTRHIRANACQFRNWLPPSSSGNFQLWNCSQCLFTTDSQAECFFHEVLHTTPLEEALRAGDKEKIVLKYECPLCPKRFKKSSLRLHLRQHTRERPFVCKVCGANFTRKSSLCNHVQKEHETSKVEKGQESQCGRCKKKFSSKEELNLHLCQAAAELSCPHEQCGYVASTPTQFAKHYATHGERLKHLKCPHCPFKSDQNSHLKRHLITHAGAKPYKCPHCEFTCGSLENLRKHALRRRLHGGRPLYGCRAGACAFGCDSAAALRAHLVAAHGDLHDARSAVAAVKRHLMVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00656672;
- 90% Identity
- iTF_00010673;
- 80% Identity
- -