Tvir025367.1
Basic Information
- Insect
- Tortrix viridana
- Gene Symbol
- -
- Assembly
- GCA_963241965.1
- Location
- OY725199.1:7460397-7482692[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.58 46 5.4 0.8 2 23 283 304 282 304 0.95 2 11 3.9 3.1e+02 2.8 0.2 1 21 338 358 338 360 0.75 3 11 0.00011 0.0089 17.1 3.0 2 23 366 388 365 388 0.96 4 11 0.0032 0.26 12.5 0.2 2 23 397 419 397 419 0.91 5 11 0.01 0.82 10.9 0.2 2 19 428 445 427 449 0.93 6 11 0.0028 0.22 12.7 0.9 3 23 459 480 458 480 0.96 7 11 2.1e-05 0.0016 19.4 1.0 1 23 485 508 485 508 0.97 8 11 0.0021 0.17 13.1 2.1 1 23 534 556 534 556 0.98 9 11 8.7e-06 0.0007 20.6 1.1 1 23 562 585 562 585 0.95 10 11 0.00029 0.023 15.8 1.1 1 23 591 613 591 613 0.98 11 11 2.9e-06 0.00023 22.1 0.5 1 23 619 642 619 642 0.96
Sequence Information
- Coding Sequence
- ATGGCTGCGATCAAGCTGGAAATAGATTCCTATGAGCCATTAGCGTGTCGTATATGTCTCTCTACAGATGTAAAGTTGGTTGGGATACATGAACAGAGTTTGGATGAAGTATTTGTGGAGTTAATGGGTACTCCCTTGTCAGTGGGCGATGGGTTCCCCCAGCACCTCTGCGAGCCCTGCCTGGCGCAGCTGCGGCAGGCCCGGGACCTGCGCAGCCGCTGTCGCCGCGCCCACGAGCTGCTCAAACAATCGCTGATACACCAACACTACATCACAACGGACTACATCCGAACAATCGACCGAATCGCAAACCGCCTGAACCCAAACGATCCAGACATTCCAGATGAAATAGACTATCCAAAGACAATTCCAGATTATCTAGACGTGTCGAATGACAGCTCGCAGCTCCTGTCGAATCTGTGCGCCGACAGCGACACAGACGTCAAAGACCCGAACTATATCGACGTGCCGGTGGCTGATTTAAATGATGTTGATGAGATTGATGAAAAATTATCAGAGATTAAAGCGAAGTTAGAGAGCAAGATTAAGAAAGAGAAGGGTGCTAAGAGGAAGAGGGGTGTTAAGAAGGAAAAGACGGGGAAAAAGAGAAAAGTGAAAGAAGTCAGAGGAGTGAACGATGAGAAGCCGGCTGTCGAGTGGGTGGCCAAGAAGAAATCGGCCCACGCGAGAAAGAAGAAAGGGTTCAAGAGATACTTCATGTGCGATGACGACTATGCCAAGTTCGAGGAGAGATATAATATAGAGGTGGTACGATTGTCAGAAGAAGAGCAACAACGAGAGATGGAGGCTAGGAAAGAGACGGAGAACTATTTGCACGCGCTGGTCCGCTGCGAGAAATGCTTCAAAGGGTTCCTGTCCATGTTCACGTATGAGAACCACGTCAAAGTGCACGATCCTGCGCTGGGTCCGAACGAGTGCCACTTCTGCTTCTGCCGCTTCAAGTGGCCGAACAAGCTGCGGACCCACCTGATCGAGTGCCACCAGCTCAAGTACGTGTGCAAGGAGTGCAAGCTGGTCATACGCGGCAGGTACATGGCGGTGATGCATGCGCAGTTCCACGCGGGGAAGACATGGGAATGCAAGCATTGCCCGCTCACTTtcaaAAAACAATCAACATTTTACACGCATTTAAGGATAAACCACTCGACGGAGAACGCGCTCGGCGGCACCTGCGACATCTGCGGCGAGACCTTCACGGGCGCCATGGGGCTGCGCATGCACAAGACGCAGACTCACAACAAGaaaGAAGTAAAAGCGTTGAAGTGTTTAATATGCAAGATACAGTTCGAGAGCAAGGAGGCACTGGAGCGACACTCGCAGCCCCACAACGACTGCGACCCCAAGCTAAGGTTCTGCGAGTCGTGCGGCTGCTCGTTCCCCGACGAGGACCAGCTCAGCCTGCACCGCCAGCGCGCGCACGGCGTCGACGTTTACAAGTGCGACGACTGTAACAAATCGTTCCTCTCCAAGTCGTCCCTGTCGACGCACATCGACCGCGTGCACCTGAACATCAAGCCGCGGTTCCGCTTCTACAACTACAAGAAGAACTGCCGCCAGCGGCCCGGCCTGCGCCTCGACTACATGTGTGAAACCTGCGGCAAGGCCTACacgTGCTACGCGCTGTTGAAGACCCATCAGATGAGCCACACCGGAGAGAGACCGTTCAAGTGCAGCCAGTGCCCCAAGAGCTTCATCACAGCCTCGCAGCTCAAGGGCCACCGGGACAGTTTCCACGCCAGAATCCGCAAGTACCGCTGCCCGCAGTGCCCCAAGACGTTCCTCCGACAGTCCTCCATATACAAGCACCGTCTCATCCACACAGGTGAGAAGCCCTACGAGTGCAGCATCTGCAGCAAGGCGTTCACTCAGTCCGGCTCGCTCACCACGCACGTCAAGTACGTCCACATGAAGCTgaagccgccgccgcgccggcgcaaCAAGGACAAGGCCTACTAG
- Protein Sequence
- MAAIKLEIDSYEPLACRICLSTDVKLVGIHEQSLDEVFVELMGTPLSVGDGFPQHLCEPCLAQLRQARDLRSRCRRAHELLKQSLIHQHYITTDYIRTIDRIANRLNPNDPDIPDEIDYPKTIPDYLDVSNDSSQLLSNLCADSDTDVKDPNYIDVPVADLNDVDEIDEKLSEIKAKLESKIKKEKGAKRKRGVKKEKTGKKRKVKEVRGVNDEKPAVEWVAKKKSAHARKKKGFKRYFMCDDDYAKFEERYNIEVVRLSEEEQQREMEARKETENYLHALVRCEKCFKGFLSMFTYENHVKVHDPALGPNECHFCFCRFKWPNKLRTHLIECHQLKYVCKECKLVIRGRYMAVMHAQFHAGKTWECKHCPLTFKKQSTFYTHLRINHSTENALGGTCDICGETFTGAMGLRMHKTQTHNKKEVKALKCLICKIQFESKEALERHSQPHNDCDPKLRFCESCGCSFPDEDQLSLHRQRAHGVDVYKCDDCNKSFLSKSSLSTHIDRVHLNIKPRFRFYNYKKNCRQRPGLRLDYMCETCGKAYTCYALLKTHQMSHTGERPFKCSQCPKSFITASQLKGHRDSFHARIRKYRCPQCPKTFLRQSSIYKHRLIHTGEKPYECSICSKAFTQSGSLTTHVKYVHMKLKPPPRRRNKDKAY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01135132;
- 90% Identity
- iTF_00010512;
- 80% Identity
- -