Basic Information

Insect: Tortrix viridana
Gene Symbol: -
Assembly: GCA_963241965.1
Location: OY725199.1:1321358-1338230[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 4.5 3.6e+02 2.6 2.0 1 23 345 368 345 368 0.90

2 11 0.0018 0.15 13.3 0.2 1 23 375 397 375 397 0.98

3 11 1.1 88 4.5 0.6 1 21 401 421 401 424 0.82

4 11 1.2 94 4.4 1.2 1 19 431 449 431 453 0.73

5 11 1.3e-05 0.0011 20.0 0.1 2 23 458 480 457 480 0.91

6 11 4.5e-05 0.0036 18.3 1.9 1 23 486 508 486 509 0.95

7 11 0.017 1.4 10.2 1.5 3 21 519 537 518 542 0.91

8 11 1.9e-05 0.0015 19.5 1.3 1 23 550 573 550 573 0.94

9 11 0.00031 0.025 15.7 2.4 1 23 578 601 578 601 0.97

10 11 2.1e-06 0.00017 22.5 3.5 2 23 609 630 608 630 0.97

11 11 1.3e-05 0.001 20.0 1.4 1 23 636 659 636 659 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	4.5	3.6e+02	2.6	2.0	1	23	345	368	345	368	0.90
2	11	0.0018	0.15	13.3	0.2	1	23	375	397	375	397	0.98
3	11	1.1	88	4.5	0.6	1	21	401	421	401	424	0.82
4	11	1.2	94	4.4	1.2	1	19	431	449	431	453	0.73
5	11	1.3e-05	0.0011	20.0	0.1	2	23	458	480	457	480	0.91
6	11	4.5e-05	0.0036	18.3	1.9	1	23	486	508	486	509	0.95
7	11	0.017	1.4	10.2	1.5	3	21	519	537	518	542	0.91
8	11	1.9e-05	0.0015	19.5	1.3	1	23	550	573	550	573	0.94
9	11	0.00031	0.025	15.7	2.4	1	23	578	601	578	601	0.97
10	11	2.1e-06	0.00017	22.5	3.5	2	23	609	630	608	630	0.97
11	11	1.3e-05	0.001	20.0	1.4	1	23	636	659	636	659	0.95

Sequence Information

Coding Sequence: ATGGAAAGTAAGGATACTTTAGTGGATAAACTGTTGTGCATGGGGTGCCTCTGCGTAGGTAGGTCACTCCAAAAAGTAACAGACGAAAGAATGAAGCAGTACTATCTGGATGCTCTCAATGAAATACCACTTTGTGATTTGCCTCAAGCGTGCCCTACCATCTGCTGGGAGTGTGAAGCTCTGCTGAACAAGGCGGTGTCGTTCAGGGAGCAAGTAAAGGATTGCTATCGGATTCTGCAGAGTTATACTAATGATAATTTGCGTGAATGCTTTCTCACCGACGTGAGCCGGCCGCCGCGCCTCCGGGTGCGTGTGTCCAGCCCCATCGACCTGCCCCCGGCTGGGCCGCGGGACCTGGCGCTGGTCAGCGTCAAGGAGGAGATGAAGGTTGACTGGGATGATGACAGAGatgaTGACCTGATGCCCACGGAGTTAGAGGACCCGGTACCAGATGATGACCTGATGCCCACGGAGTCAGAGGACCCGGTACCAGATGTTCCGGATGAAAAGACCGAGATCCAAAATTTGGATGAATGTCTCCTGATCGGCGAGAGCCAGCCGCCGCGCCTCCGGGTGCGTGTGTCGAGCCCCATCGACCTGCCCCCGGCCGGGCCGCGGGACCTGGCGCTGGTCTGCGTCAAGGAGGAGCTGGTCAGCGTCAAGGAGGAGATGAAGGTTGACTGGGATGATGACAGAGatgATGACCTGATGCCCACGGAGTTAGAGGACCCGGTACCAGATGATGACCTGATGCCCACGGAGTCAGAGGACCCGGTACCAGATGTTCCGGATGAAAAGACCGAGATCCAAGCAGTTAAAAATGACACCAAACCTGTGGTTGGGAGAGAATCGAAAAAAGCACGGAAAACGGAGAAACAAGTTGAAAAGATTCTGAAATTGAAGGAGAAAACCAAGACGAAAAGAAAACTCACCGAAGCGGAATCAAAGATAATCACCATAGAGCTGTCGTACGAGGAGATGCTGGCGGAGCGCGAGCGCGAGGCGACGCGGGAGGGCTACGTGCGGGCGCCCTACCGCTGCGAGAGCTGCCTGCTCGCCTTCAGCTACAGCCGCTCGCACCAGGCGCACCGCGCCAACAAACACGCGCCGGAGTTGGGCGACTACAGCTGCCCGATATGCAAGACGGTCATCGCGTCGGTAGACTCCTTCACCGCGCACTACAAGCGACACACGAGGagGTACGAGTGCAGTATTTGCCGCAAGCGCACGCAGGACATGAAGGTGATGCAGCAGCACTACTACGGCGCGCACGCCATCTCGCTCCGCCAGTACGAGTGCAACCTCTGCGGGAAGATATCCAActccatCGACACGCACCGCTACCACAAGGACTCGCACAAGGCGCGCGTGCCGTGCCCCGACTGCGACAAGAGCTTCAGCCACCGCGCCGGCCTCTTGAACCACAGGATAGCAGTGCACGAGCTGAAGAACGCGTTCCCTTGCTCGATGTGCGAGAAGGTGTTCCGGTGGAAGGCGAGCCTGAAGCGGCACATGGAAAAACACCATGCCAAGGACAAGTCTGCGCCGGCGTACTGCGCCGCGTGCGGCGTGAGCTTCTCCTCGGTGTGCTCCTTCCAGCGGCACATGCGGAACAGTCTCAAGCACGTCTCGCAGGACCAGCTCAAGTTCATCTGCGACCACTGCGGCCGTCGTTTCGCCGACAAGACGAAACTGCGCGACCACATCGAGGAGAAGCATCTGCATAAGACCTACCAGTGCCACATTTGTCACAAGGTGTCGAAGAACCGCGTGGGGCTGGACCAGCACGTGCGCAACGTGCACCGCGGCCGCCCCATCAACAAGATGTGCCACCACTGCGGCAAGGGCTTCCCGACCAAAGTCCAGCTGGAGTCCCACATACGCAGGCACACCGGCGAGCGGCCGTTCATATGCGAGTTCTGCCCCACCACCTTCTCGCAGCAGTCCAATCTCTACAAACACAACAGACAGGTACACCTGAACATCAAGTCTAAGCGGTACCCGCTCTCCAAGAAGAAAGGCGACAAGCCGCAGCCCGCGGAGGAACTCCAGAGGCCAGCGGCGGCGCTGCACTTCCCGCCCCAGCGGGGGTTCGTCATGTGA
Protein Sequence: MESKDTLVDKLLCMGCLCVGRSLQKVTDERMKQYYLDALNEIPLCDLPQACPTICWECEALLNKAVSFREQVKDCYRILQSYTNDNLRECFLTDVSRPPRLRVRVSSPIDLPPAGPRDLALVSVKEEMKVDWDDDRDDDLMPTELEDPVPDDDLMPTESEDPVPDVPDEKTEIQNLDECLLIGESQPPRLRVRVSSPIDLPPAGPRDLALVCVKEELVSVKEEMKVDWDDDRDDDLMPTELEDPVPDDDLMPTESEDPVPDVPDEKTEIQAVKNDTKPVVGRESKKARKTEKQVEKILKLKEKTKTKRKLTEAESKIITIELSYEEMLAEREREATREGYVRAPYRCESCLLAFSYSRSHQAHRANKHAPELGDYSCPICKTVIASVDSFTAHYKRHTRRYECSICRKRTQDMKVMQQHYYGAHAISLRQYECNLCGKISNSIDTHRYHKDSHKARVPCPDCDKSFSHRAGLLNHRIAVHELKNAFPCSMCEKVFRWKASLKRHMEKHHAKDKSAPAYCAACGVSFSSVCSFQRHMRNSLKHVSQDQLKFICDHCGRRFADKTKLRDHIEEKHLHKTYQCHICHKVSKNRVGLDQHVRNVHRGRPINKMCHHCGKGFPTKVQLESHIRRHTGERPFICEFCPTTFSQQSNLYKHNRQVHLNIKSKRYPLSKKKGDKPQPAEELQRPAAALHFPPQRGFVM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -