Basic Information

Insect: Tortrix viridana
Gene Symbol: -
Assembly: GCA_963241965.1
Location: OY725199.1:7736944-7759421[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0027 0.22 12.7 4.4 1 23 256 278 256 279 0.95

2 14 0.43 34 5.8 1.5 1 23 286 308 286 308 0.95

3 14 0.14 11 7.4 2.9 1 23 312 334 312 334 0.94

4 14 0.00042 0.033 15.3 3.0 1 23 339 362 339 362 0.97

5 14 1.1 91 4.5 0.1 2 23 368 390 367 390 0.77

6 14 0.018 1.5 10.1 1.0 3 19 403 419 402 419 0.97

7 14 0.026 2.1 9.6 0.1 3 23 433 454 432 454 0.95

8 14 0.035 2.8 9.2 0.2 2 23 462 484 461 484 0.94

9 14 3.7 3e+02 2.9 1.7 1 10 507 516 507 520 0.88

10 14 0.00016 0.013 16.6 2.2 1 23 529 551 529 551 0.98

11 14 0.011 0.86 10.8 0.0 1 17 557 573 557 574 0.90

12 14 0.00064 0.051 14.7 1.6 2 23 600 621 599 621 0.96

13 14 1.3e-06 0.0001 23.2 1.6 1 23 627 649 627 649 0.97

14 14 1.9e-05 0.0015 19.5 1.3 1 23 655 678 655 678 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0027	0.22	12.7	4.4	1	23	256	278	256	279	0.95
2	14	0.43	34	5.8	1.5	1	23	286	308	286	308	0.95
3	14	0.14	11	7.4	2.9	1	23	312	334	312	334	0.94
4	14	0.00042	0.033	15.3	3.0	1	23	339	362	339	362	0.97
5	14	1.1	91	4.5	0.1	2	23	368	390	367	390	0.77
6	14	0.018	1.5	10.1	1.0	3	19	403	419	402	419	0.97
7	14	0.026	2.1	9.6	0.1	3	23	433	454	432	454	0.95
8	14	0.035	2.8	9.2	0.2	2	23	462	484	461	484	0.94
9	14	3.7	3e+02	2.9	1.7	1	10	507	516	507	520	0.88
10	14	0.00016	0.013	16.6	2.2	1	23	529	551	529	551	0.98
11	14	0.011	0.86	10.8	0.0	1	17	557	573	557	574	0.90
12	14	0.00064	0.051	14.7	1.6	2	23	600	621	599	621	0.96
13	14	1.3e-06	0.0001	23.2	1.6	1	23	627	649	627	649	0.97
14	14	1.9e-05	0.0015	19.5	1.3	1	23	655	678	655	678	0.96

Sequence Information

Coding Sequence: ATGGAGTCCTTGAAGCTCGAGCCTGCAGGCGAGCTTCTCGCTTGCCGTATATGCCTGGCAACTGACACAGAGTTATACAGCATTATAGACCATCATTTGGGAGAAGCTTATGTGGAAATAATCGGAACTATGCTGTCAGCGTGGGACGGGTTCCCGCAGCACGTGTGCGCCATCTGCCGGCGGCTGCTGCGCAAGAGCGCCGAGTTCCGCGCGCGCGGGCTGCGCGCGCAGGAGAAGCTGCGCCACTGCCTCATGCACCAGCACTTCATAACGACGGAGTATATTCGCTCGGTGGACCGCGCGGCGCTGGACCTGGTGCTGGCGCtgagcgcggcgcgggcgcccgAGCCGATCAGCTGCGCGCACGGCGACGTCACGCTGAAGCCCGAGCCGCGGGAGAGGGCCGAGCCGCCGGAGTGCAAGGACGAGCTGCTCTCTGTTGGTGGACaagAGAACGTGACAGAGGACTTGGACAGCGACCATCTCAGTCTGAAGTACGAGGACGACTCGAACGACGACGTGGCGCTGAGCGAGCTGcaggcggcgcccgcgccgaaGGAGAGGAAGAAGAAGGTGCTCAGGAAAGCTAAGataaaaaaagtaaaaacagaTACGAAACAACGCCGGAAAACAATGAGGATCCGCGACGAGGATTTCCCCGCGTTTGAAAAGGAGTACAACTTCGAGGTGGTGATCCTGACGCGCGAGCAGCAGGCGGCGGACATGGCGGCGCGCCGCGAGCGCGACAACTACGCCAACTCGCTGTTCAAGTGCGAGCGCTGCTTCAAGGGGTTCTACTCGCAGGACACGCTGCGGAACCACAACGCGAAGCACCACGACGAGAGCATCGGCGCGCATGCATGCGAGCTGTGCCAGTGCCGCTTCCGCATCCCCGGCATCCTGCGCCGCCACGCCGAGACGCACCGCCTGCGCTTCCTGTGCCAGCACTGCGGCTTCACGGCCAGGGACAGGTCGCACGCCATGACGCACGCCAAGGAGCACCGCGGGCTCCGCTACGAGTGCCAGCACTGCGGGAACTCCTTCAAAAAACGGTCGACGTACGGCACGCACGTGCGCATACAGCATCCCAACGAGAACAAGTCGTGCGACGTGTGCGGCGAGACGTTCCTCGGCGCGCTCGGGCTCGCGCTGCACAAGAAGAAATCGCATAGGCAGCAGCAGGCGTCGGAGAGCGGGTCGGCGTGCTGCAAGCAGTGCGGCGTGCAGTTCGCGAGCCAGTACGCGCTCTCGCGGCACTGCTCGCTCGCCGCCGACGGCTGTCAGAACACCAGCGCGTGCGCACTGTGCGGCGCCAACTTCAAGGACGACGGCGGCCTGCAGGAGCACACGCGGGAGCGGCACGGGGGCGGCTCGCGGGAGACGCGCTGCCGAGAGtGTGACATGACGTTCGCGACGGAGGCGTCCCGCGCCGTGCACTACGAGCGCGTGCATCTCAAGGTCAAGGTCACGCGGCGGCTGCCCAAGACGGGCCGCAAGTACGACCGATACGGGGACCACTTCATGTGCGAGATGTGCGGAAAGAAGTGCCAGACGGGCCGCAAGTACGACCGATACGGGGACCACTTCATGTGCGAAATGTGCGGGAAGAAGTGCCAGAACAACATCGCGCTGAAGTACCACATCCGGTCGCACACAGGCGAGAAGCCGCACGCGTGCCCGCACTGCCCCAAGCACTACTCCACGCCCGTCGCGCTGCAGGTCACCACACTTTCTAATCTAATAGAAATCATTTCTTTTCAGTACCACATCCGGTCGCATACTGGCGACAAGCCGCTGGTCTGCCCGCACTGCCCGCTGCGGTACGCCACGCACAAGGGACTGCAGACGCACCTGCTGAAGCACACGGGCGAGCGGCCGTTCAAGTGCGAGCTGTGCGGGAAGGCGTTCACGCAGAAGACCATGCTGCAGAAGCACAAGACCGTTCACACGGGAGAGAAACCTTTCTCGTGCGAAATATGCGGCAAGACGTTCACGCAGTCAGGCTCGGTGCACACGCACGTCAAGTACGTGCACAAGAAgctgccggcgccgccgcgcaaCCGCGCCGCGCGGCACAAGCCCGAGTga
Protein Sequence: MESLKLEPAGELLACRICLATDTELYSIIDHHLGEAYVEIIGTMLSAWDGFPQHVCAICRRLLRKSAEFRARGLRAQEKLRHCLMHQHFITTEYIRSVDRAALDLVLALSAARAPEPISCAHGDVTLKPEPRERAEPPECKDELLSVGGQENVTEDLDSDHLSLKYEDDSNDDVALSELQAAPAPKERKKKVLRKAKIKKVKTDTKQRRKTMRIRDEDFPAFEKEYNFEVVILTREQQAADMAARRERDNYANSLFKCERCFKGFYSQDTLRNHNAKHHDESIGAHACELCQCRFRIPGILRRHAETHRLRFLCQHCGFTARDRSHAMTHAKEHRGLRYECQHCGNSFKKRSTYGTHVRIQHPNENKSCDVCGETFLGALGLALHKKKSHRQQQASESGSACCKQCGVQFASQYALSRHCSLAADGCQNTSACALCGANFKDDGGLQEHTRERHGGGSRETRCRECDMTFATEASRAVHYERVHLKVKVTRRLPKTGRKYDRYGDHFMCEMCGKKCQTGRKYDRYGDHFMCEMCGKKCQNNIALKYHIRSHTGEKPHACPHCPKHYSTPVALQVTTLSNLIEIISFQYHIRSHTGDKPLVCPHCPLRYATHKGLQTHLLKHTGERPFKCELCGKAFTQKTMLQKHKTVHTGEKPFSCEICGKTFTQSGSVHTHVKYVHKKLPAPPRNRAARHKPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -