Tvir016404.1
Basic Information
- Insect
- Tortrix viridana
- Gene Symbol
- -
- Assembly
- GCA_963241965.1
- Location
- OY725185.1:4486415-4500757[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5 4e+02 2.5 1.2 2 21 7 27 6 28 0.85 2 12 3.4 2.7e+02 3.0 0.1 2 21 34 53 33 54 0.90 3 12 0.15 12 7.3 0.3 1 12 195 206 195 215 0.83 4 12 7.7e-06 0.00061 20.7 0.1 1 23 371 393 371 393 0.99 5 12 1.7e-06 0.00014 22.8 0.7 1 23 405 427 405 427 0.99 6 12 5.1e-05 0.0041 18.1 2.3 1 23 479 501 479 501 0.98 7 12 0.0078 0.63 11.3 2.2 1 23 517 539 517 539 0.98 8 12 1.5e-06 0.00012 23.0 4.5 1 23 545 567 545 567 0.98 9 12 0.003 0.24 12.6 6.2 1 23 573 595 573 595 0.97 10 12 2e-06 0.00016 22.6 0.4 1 23 601 623 601 623 0.98 11 12 0.00027 0.021 15.9 1.0 1 23 627 649 627 649 0.98 12 12 0.0051 0.41 11.9 0.1 1 23 657 680 657 680 0.95
Sequence Information
- Coding Sequence
- ATGGGCGATCTGTTGTTAAAATGCCCATTATGCTGTAGCGAAGTATTTCATTCTAAGCAATTACTAGTAGATCACTTGTCAAAGATTTGGTTTAATTTGCGTTGTCCTGTGTGCAACGATGAATGCTCTTCAATAGCACAGATGATAGAACATATAAATTTAGAGAGATGTAGTTGTAAAACTAAGACCGAGGCGGTGGATCATAACGGGGTCCTGGAGACTACCCACAACGTTCAAGCAAGTCCACCCCAGGAGCATCACAGTATTTCAGAAGACCAAGAGGAAAATATTATTGATCAGTCTCAAGTGCCAGAATTGTCAGATGTCAGCAGGCTGTACGTAGAATTGTTAAGCAAGCAGCTTGCAAAACCCTGCCTTCAAACACAAGACCTGGAGCTGGTGAAAGAAGATGGGGAGAGCCGCTATGTTATTGTGACACAAGCGGACTCAATGCAGTCtggcaatacaatttttactaaACAGAATAGTGATGGGACTATATCTTTGACTACTGTCACAGATATGAAGCTGGAGCCAGAACCTCTCATACCAGATCCTGAGCCAAAGGAGAACCAGGAGATTTACAGTTGTAACACATGCGGAGTGTCCTTCTCTTCAGTCATAGAGCACATTCAGAACTATCACAATGACCAAGAAGTTGTTGTGGAGGAATCATTAGAACAGTGCTCGCTTCCAGTGGAGTTCCAACAGATGAACAATGAGGAAACACTTTCTACAGACCAACAGATGTCACGTAGGGTGATTACTGACACCGGAGACATTGTAGAAACGCCTGTTCTTCTGAACTCTACTCCAGGAGATAACTCGGCAACGGAACCCATGACCACAGAAGTACCAGTTTTAACACAGGAGCAGCCTAAACCAAGTCGACCGGCCACTACTGAAAAGCGTTTCGTACAAGTTGATAGTGTTGTAAGAAGTCTCAAAACTAAAGATGATGTCAAGAAAGGTCCTTTCCATAAAGTGGTAGTGAAGGAGATGCAAATGCTAGAAGGCGGCAACAAGGTGAAAGTGTATAACTGCCTTACCTgcaatatttatgtgatgtctCTAGATGAATTCAAGTCTCATCCGTGTAAATCACCGAAATATCAGTGCCCGCAATGCCCAGTAGTTTACGAGAATTCTAAATCACTAAGTGCACACATGAAGGTCCACAAAGCGCTTCCAAatGGTGACATCGCAGGCCCTTTCAAATGTGACATTTGTACCACAGTGTTCCCGAGTAATAAATCGTTGAAGTTACACATAAGAATGCATGATCCAGTCAAGGCGCGACCGATAGAGCTGCCCGTGGAAACGGAGGAAGGCGCGGAGCCCAGCCGCGACAAGTTCATCTGCTCCGTGTGCGACAAGCTCATCCCCATCGACTACCGCGCCGTGCACCACAACTCGCACAAGGCCAGCAACAAGTACAACTGTGACATCTGCAACCGCAAGTTCCATTCCAAAGAGTACCTGGAAATGCATATGAGTGTTCATAATATGGATAAGGCTCCTGTAAATAAGCAACTCAAGTCGCTTCCCTACAACTGTATGTACTGCAGCCGGCAGTTCGCGCGGCCGCACGAGAAGGTCAAACACGAGCGGATACACACTGGCGAGAAGCCCCACTCGTGCGAAATCTGCGGCAAGTCGTTCCGCGTGTCGTACTGCCTCACGCTGCACATGCGCACGCACACTGGTGCGCGGCCCTACGCCTGTCCGCACTGCAACAAGAGGTTTAAAGCGCATAGCGTGTACAACCATCACCTGCTAACGCACTCCGAAGTCCGCGCCTACAAGTGTCCGTACTGCCCCAAGGCGTTCAAGACGAGCGTGCAACTCGCCGGCCACAAGAATTCTCATACCAAGCCGTTTTCCTGCCAACACTGCAACAGGCCGTTCGCGTCGCTGTACGCGGTGCGCGCGCACACGGAGACGCACGCGCGCCAGAACAACCTGAAGTTCTCGTGCGCGCTGTGCGGCGCCAGCTACGCGCGCACGTTCGCGCTCAAGGACCACGTCAAGCAGGTGCACAAGCAGGAGCTCGGCGCCGACAACACGCTCGGCGTGAAGACGGTGGACCTTAAAGAGGAGGACTGGCCGGTATCAGAAGACACGGACGCGGCGCAAGTCTCTCTCGAGAAATCTGTGCCAAACGAGATAAATCAACTCGCGATAAATTCTAATGAAGCAGAGCCTGTGATGATAGTACCCTAa
- Protein Sequence
- MGDLLLKCPLCCSEVFHSKQLLVDHLSKIWFNLRCPVCNDECSSIAQMIEHINLERCSCKTKTEAVDHNGVLETTHNVQASPPQEHHSISEDQEENIIDQSQVPELSDVSRLYVELLSKQLAKPCLQTQDLELVKEDGESRYVIVTQADSMQSGNTIFTKQNSDGTISLTTVTDMKLEPEPLIPDPEPKENQEIYSCNTCGVSFSSVIEHIQNYHNDQEVVVEESLEQCSLPVEFQQMNNEETLSTDQQMSRRVITDTGDIVETPVLLNSTPGDNSATEPMTTEVPVLTQEQPKPSRPATTEKRFVQVDSVVRSLKTKDDVKKGPFHKVVVKEMQMLEGGNKVKVYNCLTCNIYVMSLDEFKSHPCKSPKYQCPQCPVVYENSKSLSAHMKVHKALPNGDIAGPFKCDICTTVFPSNKSLKLHIRMHDPVKARPIELPVETEEGAEPSRDKFICSVCDKLIPIDYRAVHHNSHKASNKYNCDICNRKFHSKEYLEMHMSVHNMDKAPVNKQLKSLPYNCMYCSRQFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCNKRFKAHSVYNHHLLTHSEVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFSCQHCNRPFASLYAVRAHTETHARQNNLKFSCALCGASYARTFALKDHVKQVHKQELGADNTLGVKTVDLKEEDWPVSEDTDAAQVSLEKSVPNEINQLAINSNEAEPVMIVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00009353;
- 90% Identity
- -
- 80% Identity
- -