Tvir024204.1
Basic Information
- Insect
- Tortrix viridana
- Gene Symbol
- -
- Assembly
- GCA_963241965.1
- Location
- OY725198.1:1391360-1395063[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.17 13 7.1 1.9 1 19 101 119 101 122 0.89 2 12 0.0018 0.14 13.3 1.5 1 23 141 163 141 163 0.97 3 12 1.1e-06 8.6e-05 23.4 2.8 1 23 168 190 168 190 0.99 4 12 0.0015 0.12 13.5 10.4 1 23 191 213 191 213 0.99 5 12 6.7e-05 0.0053 17.8 0.2 1 23 219 241 219 241 0.96 6 12 0.00051 0.041 15.0 0.6 1 23 247 269 247 269 0.97 7 12 2.1e-07 1.7e-05 25.7 1.7 1 23 275 297 275 297 0.98 8 12 0.29 23 6.3 0.4 2 23 306 328 305 328 0.95 9 12 9.2e-06 0.00073 20.5 0.4 1 23 334 356 334 356 0.97 10 12 0.00032 0.025 15.7 4.7 1 23 362 384 362 384 0.96 11 12 2e-06 0.00016 22.6 0.5 1 23 392 414 392 414 0.97 12 12 2.8e-06 0.00023 22.1 1.2 1 23 420 442 420 442 0.96
Sequence Information
- Coding Sequence
- ATGGCGTCGCCGGCGACCGTGCGCGTGAAGGAGGAGCCGGAGTGGGCCGACGCGGACGACGCGGCGGGCTTGTGCTCCGAGCACGAGGTCAAGGACGAGCTCGAGCTGGGCGAGGAGCGGCTGCAGCCGCAGGACATCGCCTACGCGCTGCACGAGTCGTTGAGCGAAGTGAAAGCTGGCGCGGTGTCTCGGGCGCcgcccgcggccgccggcgccgagGCGGCTCGCGCGCAGGAGGCGCTCGCCGCGCTCAGGCCCTGCTCCGTCAAACTCGAGAGCGTTCCCGTCGACCAGCTCCTGCATGCGTGCACTACTTGCCACAAGACATTCCTCCAAGAAGCCAGTCTGCTCACTCACGCGTGTGCTCGTGGTGGCCGTGAAACTCTTGCGAGAAGCGCTGTCAGCGATAAAACGAGACAATACTTCTGTGATAATTGCGGGCGAAATTTTCTTTTCAAGACTTCTTTAATTCGGCATCTTCAACTTCATCAAGAGGAACCTTACGTTTGTAACATTTGCGAGAAATTGTTTACTAATTGCTCCGCCCTACGTTATCACATGCGAACTCACTACACGTGCAGCATTTGCCAAAGAGAGTATAAACATTTgtgtcatttaaaaaaacacaagAGAACTCACTCGAAGGAAAGACCATACTCTTGCGGCATTTGCAACAAAACGTTTAAGCAACCGGGATACTTGGGCGGGCACAAGCTGATTCACGCCGGGATAAAACGCCACGTTTGTGATGTTTGTAAAAGAGCGTTTAGGGCGCGTTCTATTCTGGtccagcacatgcgggttcacactggagagaaaccaTACTCCTGCGACGTCTGTAAGAAAACGTTTTCACAGAGCTCCTCGCTACTTAAGCACATGTTTATTCACAAGAGGGCCAGCCCCGAATCGGTGTCTTGCGAAATCTGTAATACACAGTTAATGCATCGCTCGTATTTACCGGAACATATTATGAAAGTTCACTCGGGGCTCAAACTGTACTCGTGCGATATTTGTAAGAAAGAGTTTTCGACTCGCACTGATATAGCTCGGCACATGCTCGGCCATACAGAGTTCAAACCGCACTCTTGCGAAATCTGTAAAAAGCGTTTCGTGCATCGCCGGAGTTTAAACGATCATAAGCTGGTTCACTCTCAGCCCAACGTCAGACCCTTCCCTTGCGACATTTGCAGCAAAAGGTTTACGTCACGCGGAAATTTGTGGTCGCATAAACAGATTCACTCAGAAGCGAAGAAACACGCTTGTGATGTGTGTAAGAAAGGGTTTACGCGGCTTCCTAGCTTATTTGTGCATATGCGGACTCATTCCGGCGAAAAAAAGACAAATGATACTCCTGCGACATGA
- Protein Sequence
- MASPATVRVKEEPEWADADDAAGLCSEHEVKDELELGEERLQPQDIAYALHESLSEVKAGAVSRAPPAAAGAEAARAQEALAALRPCSVKLESVPVDQLLHACTTCHKTFLQEASLLTHACARGGRETLARSAVSDKTRQYFCDNCGRNFLFKTSLIRHLQLHQEEPYVCNICEKLFTNCSALRYHMRTHYTCSICQREYKHLCHLKKHKRTHSKERPYSCGICNKTFKQPGYLGGHKLIHAGIKRHVCDVCKRAFRARSILVQHMRVHTGEKPYSCDVCKKTFSQSSSLLKHMFIHKRASPESVSCEICNTQLMHRSYLPEHIMKVHSGLKLYSCDICKKEFSTRTDIARHMLGHTEFKPHSCEICKKRFVHRRSLNDHKLVHSQPNVRPFPCDICSKRFTSRGNLWSHKQIHSEAKKHACDVCKKGFTRLPSLFVHMRTHSGEKKTNDTPAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -