Tvir024620.1
Basic Information
- Insect
- Tortrix viridana
- Gene Symbol
- -
- Assembly
- GCA_963241965.1
- Location
- OY725198.1:5907979-5913235[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 6.3 5.1e+02 2.1 0.2 2 23 170 192 170 192 0.93 2 25 0.016 1.3 10.3 1.2 2 23 198 220 197 220 0.92 3 25 0.017 1.4 10.2 0.9 1 23 225 248 225 248 0.94 4 25 0.013 1 10.6 0.1 1 23 253 276 253 276 0.92 5 25 0.073 5.8 8.2 0.1 2 23 284 306 283 306 0.91 6 25 0.00052 0.041 15.0 0.5 1 23 312 334 312 334 0.96 7 25 0.16 13 7.2 0.0 1 23 386 409 386 409 0.90 8 25 8.9 7.1e+02 1.7 0.1 2 23 440 462 439 462 0.89 9 25 0.024 1.9 9.8 0.6 2 23 485 507 484 507 0.95 10 25 0.00017 0.014 16.5 0.6 1 23 512 535 512 535 0.94 11 25 0.093 7.4 7.9 0.2 1 23 540 563 540 563 0.93 12 25 0.033 2.6 9.3 0.3 2 23 569 591 568 591 0.96 13 25 0.00077 0.062 14.4 0.2 2 23 599 621 598 621 0.95 14 25 0.0017 0.13 13.4 0.9 2 23 628 649 627 649 0.96 15 25 7.7 6.2e+02 1.9 0.1 1 9 655 663 655 669 0.83 16 25 2.7 2.2e+02 3.3 0.2 1 23 706 729 706 729 0.91 17 25 0.0036 0.29 12.3 0.0 2 23 760 782 759 782 0.94 18 25 0.028 2.3 9.5 2.5 2 23 805 826 805 827 0.94 19 25 0.0029 0.23 12.6 3.3 1 23 832 855 832 855 0.96 20 25 0.083 6.6 8.1 0.5 1 23 860 883 860 883 0.93 21 25 0.0072 0.57 11.4 1.6 2 23 889 911 888 911 0.92 22 25 0.00046 0.037 15.1 0.6 2 23 919 941 918 941 0.97 23 25 0.0017 0.14 13.4 0.1 2 23 948 969 947 969 0.97 24 25 2.7e-06 0.00021 22.2 0.9 1 23 975 997 975 997 0.93 25 25 2e-06 0.00016 22.5 2.3 1 23 1003 1026 1003 1026 0.98
Sequence Information
- Coding Sequence
- ATGCACATACAAAGAAGTGAACTTCCGACTCCAAACACTAACCTGGAAGAGAATGCCAAAGTAAAAGCCTCTCGTTTCGTTGCAGGTTCAAAATACATTTCACGGCTGGACAAGGTCAAACTGGAAAACCGATACCAGCTCGAGACGAAACGAAGAAATATTGAATCCGTATTATTGTACAGTAACGCCACTCCTTTTGTGTGGCATCGCGGCTTACACCAGTGCTTCTTCTGTAAGGTCTCGCACAAGAACCCCAATGAGATTCTATCTCACTATGAGAGCCATGACTGCGTCAATCTGCCTATAGCCGTTAAAAAATACACGCAAAAACGGGGAAATAGAGAGGCCGCAATCAAAGTTGAAATCACTGGTTTATTCTGCAAGTTGTGCGCGGAGAGCAAGTCTGATCTAAATCAGCTTATACACCATTTAATTGATAATCACGAAGTGGAATACGACCTGCATATTCCTAACTGCTTCCTCCCGTTCCGGTTGACGGGCACGCCGACTTGCGGGACTTGTGCCGTGGAGTTTGACTTATTCGAGTATCTGCTCCGGCACGCGAACAAGCAACACCTCCACCATAGTATCGTGTGTGAAATTTGCGGGAAAAGTTTCTTTTCCGAACGATACCACACGTTGCATATGAAAGCCTTCCACAGAGAAGGCGGCTACACGTGCGAATACTGCGACTTGAAATTTTCCTCCATGcctaaaaaaaatcttcacaTTCAAAACATGCATTTGACAAAACCATATAAATGTTCAATCTGCGACGAGACATTAAAAAGCGCGTACTTGAAGAATGTGCATTTGGCTGAAGTGCACGGGCTCGAGGAGAAAAGAATCAAATGTCCACAATGCCCTAAGATCTTCCCTCAAGATAATATTATGGTTCGCCATTTAAAACGCGTGCATTTAAAATTGAAAGAACACGTGTGCCCTGTGTGCGGCGAGCGGTTCTTTGAGAGCTACCAGatgaaaatacatttaaatggaCACACAGGAGACAAGAATTACAGCTGTGGCACTACAAAGGAAAAGAAGCGCAAGGCAACTGCGCTCCGCCGTTACAACTTGAGTTTGATTCGGCGAAACGTCCATTTAGTCTTAGAATACGGGAACGTGATGCCGTTCATGTGGGCGCGGGTTGGATACCTCTGCTTCTATTGCAAAGCCTCGGTCGAGGACCCGGAGGACTTGAGGGAGCATGTCGCCGAAATGCACCAGTTCCTAGACCTCGATAAGATTCTCTGCGAGCGAATTATGACCACTTGGGACAACGAAGTGCCCGTCAAACTTGACGTCACGAATATTTCCTGCAAACTCTGCATAACCCCGACCCCTAGCCTTCCTCACCTTATTAATCACTTGAATGATGTCCACGACGCGCAATACGACACGTCCATGAAAGACTGCTTTTTCGCTTTTGAACTCGGTGCAGAAAAGGTTACATGCGCGACTTGCGACACCCAGTTCAACTATTTCGAGTATCTCTTACGCCATGCGAACAAGTATCACATTGATCACGAGTTCATCTGCAACGTTTGCGGGAAGTCTTTCCACCGGAAGATCGCTCTGGTGATGCATGTCAATGAATACCATAAAGAAGGTGGATACCCTTGCAATATTTGCGGCTTGGTAAGCAGTACCGCAGCGCGGCGGTACAATCACAAGAGGAATGTCCACTTGCTTGATCACTTGAAGTGCCCTTACTGTGATGTGATAAGTAAAAGTCAGTATTATAAGAAACTTCACTTAGCGACAGTGCATAGTGTGCAAGAGTGCAGAAGCGAATGCCCTCACTGTGGAAAAATGTTTCCTCAAAAGGGTATAATGTTAGCGCATGTTAGGCGCGTCCATTACAGGGAACGTAACGTTACTTGCACCATCTGTTCCGCTAAGTTTTTCAACAAGGCTCACTTGGACGCGCATATGGTGAAACATACTGGAGGAATGGAGTTTACATGTGATATATGTGGTGCCAAAATCAGTTCAATGGAGGATAAACATAAGAAAATGGAAATCAAACGTAAGCAATTGATAAAACGGCGTAACGTAGAATACGTGCTTCAATATGGCAACGTCACACCCTTCCTGTGGTACAAGGGGAAGTATAGATGCTTTTACTGCACTGAGCCGATGAAAAACCCCGAAATATTGCGCGAGCATACAGCCAAAGTCCATCAGTTCGCGAATCTAGAGCTCGCCGTTTTCGACAGAACGAAAGATAACCGGAACAAAGATGCTGCAATCAAAATTGATGTTACTGGCATCTCCTGTAAACTGTGCCCCAAGACTGTCCCGAACTTGGAACAGCTGATCTCGCATCTCATCATAGCACACGACGCCGAGTATGACGTCAGCGTCCCCAACTGCCTGTTACCATTCCAGCTAGACAAGGACAACCCTTCTTGCCCGACTTGTAAAATGAAATTCGTCTTTTTCGAGTATCTTCTACGCCATGCCAACAAGCATCACTTGTCACACGAATACATATGCGACGTTTGTGGAACTAGTTTCCAAGGAGAGAACCATTTGAAAATGCATCACAGGTACTACCACAGGGAGGGCGGGTATACTTGCGACTACTGCGATGTAAGCCTCACGACGCTatccaaaaagttgattcatGAAAAGAACGTTCACCTGGTCAACTTACTCAAATGCCCTCACTGCACTGAGACCTTCAAAAGTCCTTACTTCAGAAAGTTGCATTTGGCTAACGTGCACGGTGTCGAGgagttgaaaattaaatgtcaGTACTGCTCGAAAGTGTTCCCGCAGGAGAGCATAATGTCTCGGCATATGCGGCGAGTTCATTTAAGAGAGAGGAATGTCGAGTGCGAGGTTTGCGGTGAAAAGTTCTTCGGACCTTATGATGTTAAGCTGCATATGCTCAAGCATAGTGGCGAGAAGGCCTTTGTTTGTTCGGTTTGCGGAAAAAAATTCTCAAAGAAGAGCAACCTGAATTCCCACTCCGTCATACATACTGGGAGGAAAGCTTATACTTGCTCGATTTGCAATAAAGCTTTTGCGTATCACACAAATTTGACTACACATATGAAGAGTATACACCAAGCCTACATCGAACCGCTTGAGAAAGGGATAACTGAAGATTTAAACGAGATGGAAGTCGTTCAAATGGAATTTATAAAAGACGATTTAGATGAAGCCGGAGTATCCAGCCAATACGTTATTCAAGAATCGATGTAA
- Protein Sequence
- MHIQRSELPTPNTNLEENAKVKASRFVAGSKYISRLDKVKLENRYQLETKRRNIESVLLYSNATPFVWHRGLHQCFFCKVSHKNPNEILSHYESHDCVNLPIAVKKYTQKRGNREAAIKVEITGLFCKLCAESKSDLNQLIHHLIDNHEVEYDLHIPNCFLPFRLTGTPTCGTCAVEFDLFEYLLRHANKQHLHHSIVCEICGKSFFSERYHTLHMKAFHREGGYTCEYCDLKFSSMPKKNLHIQNMHLTKPYKCSICDETLKSAYLKNVHLAEVHGLEEKRIKCPQCPKIFPQDNIMVRHLKRVHLKLKEHVCPVCGERFFESYQMKIHLNGHTGDKNYSCGTTKEKKRKATALRRYNLSLIRRNVHLVLEYGNVMPFMWARVGYLCFYCKASVEDPEDLREHVAEMHQFLDLDKILCERIMTTWDNEVPVKLDVTNISCKLCITPTPSLPHLINHLNDVHDAQYDTSMKDCFFAFELGAEKVTCATCDTQFNYFEYLLRHANKYHIDHEFICNVCGKSFHRKIALVMHVNEYHKEGGYPCNICGLVSSTAARRYNHKRNVHLLDHLKCPYCDVISKSQYYKKLHLATVHSVQECRSECPHCGKMFPQKGIMLAHVRRVHYRERNVTCTICSAKFFNKAHLDAHMVKHTGGMEFTCDICGAKISSMEDKHKKMEIKRKQLIKRRNVEYVLQYGNVTPFLWYKGKYRCFYCTEPMKNPEILREHTAKVHQFANLELAVFDRTKDNRNKDAAIKIDVTGISCKLCPKTVPNLEQLISHLIIAHDAEYDVSVPNCLLPFQLDKDNPSCPTCKMKFVFFEYLLRHANKHHLSHEYICDVCGTSFQGENHLKMHHRYYHREGGYTCDYCDVSLTTLSKKLIHEKNVHLVNLLKCPHCTETFKSPYFRKLHLANVHGVEELKIKCQYCSKVFPQESIMSRHMRRVHLRERNVECEVCGEKFFGPYDVKLHMLKHSGEKAFVCSVCGKKFSKKSNLNSHSVIHTGRKAYTCSICNKAFAYHTNLTTHMKSIHQAYIEPLEKGITEDLNEMEVVQMEFIKDDLDEAGVSSQYVIQESM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -