Basic Information

Insect: Tortrix viridana
Gene Symbol: -
Assembly: GCA_963241965.1
Location: OY725198.1:241765-243243[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.18 15 7.0 1.9 1 19 57 75 57 78 0.89

2 15 6.7e-05 0.0054 17.8 0.2 1 23 97 119 97 119 0.97

3 15 3.2e-05 0.0026 18.8 0.7 1 23 124 146 124 146 0.97

4 15 1.2e-05 0.00099 20.1 2.7 1 23 147 169 147 169 0.99

5 15 5.1e-07 4.1e-05 24.4 2.6 1 23 175 197 175 197 0.97

6 15 5.8e-08 4.6e-06 27.4 2.1 1 23 203 225 203 225 0.96

7 15 8.5e-08 6.8e-06 26.9 1.6 1 23 231 253 231 253 0.99

8 15 0.00019 0.015 16.4 1.8 2 23 262 284 261 284 0.96

9 15 9e-05 0.0072 17.4 0.2 1 23 290 312 290 312 0.97

10 15 0.00041 0.033 15.3 3.6 1 23 318 340 318 340 0.97

11 15 0.00085 0.068 14.3 1.4 1 23 348 370 348 370 0.97

12 15 0.021 1.7 9.9 0.5 1 23 375 397 375 397 0.95

13 15 0.00013 0.011 16.9 0.1 1 23 403 425 403 425 0.98

14 15 0.00065 0.052 14.7 1.8 1 20 431 450 431 450 0.95

15 15 0.00039 0.031 15.4 1.6 1 23 462 484 462 484 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.18	15	7.0	1.9	1	19	57	75	57	78	0.89
2	15	6.7e-05	0.0054	17.8	0.2	1	23	97	119	97	119	0.97
3	15	3.2e-05	0.0026	18.8	0.7	1	23	124	146	124	146	0.97
4	15	1.2e-05	0.00099	20.1	2.7	1	23	147	169	147	169	0.99
5	15	5.1e-07	4.1e-05	24.4	2.6	1	23	175	197	175	197	0.97
6	15	5.8e-08	4.6e-06	27.4	2.1	1	23	203	225	203	225	0.96
7	15	8.5e-08	6.8e-06	26.9	1.6	1	23	231	253	231	253	0.99
8	15	0.00019	0.015	16.4	1.8	2	23	262	284	261	284	0.96
9	15	9e-05	0.0072	17.4	0.2	1	23	290	312	290	312	0.97
10	15	0.00041	0.033	15.3	3.6	1	23	318	340	318	340	0.97
11	15	0.00085	0.068	14.3	1.4	1	23	348	370	348	370	0.97
12	15	0.021	1.7	9.9	0.5	1	23	375	397	375	397	0.95
13	15	0.00013	0.011	16.9	0.1	1	23	403	425	403	425	0.98
14	15	0.00065	0.052	14.7	1.8	1	20	431	450	431	450	0.95
15	15	0.00039	0.031	15.4	1.6	1	23	462	484	462	484	0.96

Sequence Information

Coding Sequence: ATGTTGTATTGTTCGGTTTCAGAGTCGTCGAGCGAAGTGAAAGCCGACGCGGTGTCTCGGGCGCcgcccgcggccgccggcgccgagGCGGCTCGCGCGCAGGAGGCGCTCGCCGCGCTCAGGCCCTGCTCCGTCAAACTCGAGAGCGTTCCCGTCGACCAGCTCCTGCATGCGTGCACTACTTGCCACAAGACATTCCTCCAAGAAGCCAGTCTGCTCACTCACGCGTGTGCTCGTGGTGGCCGTCAAACTCTTGCGAGAAGCGCTGTCAGCGATAAAACGAGAAAATATATCTGTGATAATTGCGGggaaaactttattttgaagACTTCTTTAATTCGGCATCTTCAACTTCACCAAGAGGaaccttacatttgtaacaTTTGCGAGAAATTGTTCACTAATATCTCCACCCTTCGTAATCACAAGCGAGCTCACTACACGTGCAGTGTTTGCCAAAGAGAGTTTAAACAATTGACACTTTTGAATAGACACAAGAAAACTCACTCGAAGGAAAAACCGTACCCTTGTGACATTTGCAACAAAACGTTTAAGCGACGGGATCACTTGAACAGccacaagctgattcactccggaataaaaagccacgcttgtgatgtctgtaagagaGTGTTTAGCCGGCGTTCTaatttgacccagcacatgcgggttcacgCTGGAGAGAAACCATACTCCTGCGACGTCTGTAAGAAAACGTTTTCACGGAGGGGCTCACTAACTTCGCACATGCTTACTCACACGGGAGCCAGCCCCGAACCGGTGTCTTGCGAAATCTGtaataaacgtttaaagcatCGCCGGTCTTTATCGGCACATATTAAGAGGATTCACTCGGGGATCAAACCGCACTCGTGCGAtatttgtaagaaagcgttttcGACTCGCGGCGAAATAGCTGGTCACATGTTGGTTCATACAGGGTTCAAAGCGCACTCTTGCGGAATCTGTAAAAAGCGGTTCAGGTTTCGCCGGAGATTAAACGATCATATGCTGATTCACTCTCAGCCCTACGTCAGATTCTTTCCTTGCGACATTTGCAGCAAAAAGTTTACGATACGCGCAAGTTTGTTGTCGCATAAACACATTCACGAAGCGAAGAAACACGCTTGTGATGTGTGTAAGAAAGAGTATACGTGGCGTGTTGACTTAGTTACCCACATGTTTGTTCACTCGGGGATCAAACCGTACTCGTGCGAtatttgtaagaaagcgtttgCGACTCGCAATAGAATAGCTGCTCACATGCTCGTCCATACAGGGGTCAAACCGCACTCTTGCGGAATCTGTAAGGAACGGTTCAAGTATCGCTGGAATTTAACTAAGCACTACTGGTTGAGTCACTCCCGGCCCGACCACAGACCTCACGCCTGCGACGTTTGCAACGAAGCGTTTAAGACACGCGAACGTTTGTTGACGCATAAGCAGACACACTACGAAGCAAAACACGCTTTTGGTTGA
Protein Sequence: MLYCSVSESSSEVKADAVSRAPPAAAGAEAARAQEALAALRPCSVKLESVPVDQLLHACTTCHKTFLQEASLLTHACARGGRQTLARSAVSDKTRKYICDNCGENFILKTSLIRHLQLHQEEPYICNICEKLFTNISTLRNHKRAHYTCSVCQREFKQLTLLNRHKKTHSKEKPYPCDICNKTFKRRDHLNSHKLIHSGIKSHACDVCKRVFSRRSNLTQHMRVHAGEKPYSCDVCKKTFSRRGSLTSHMLTHTGASPEPVSCEICNKRLKHRRSLSAHIKRIHSGIKPHSCDICKKAFSTRGEIAGHMLVHTGFKAHSCGICKKRFRFRRRLNDHMLIHSQPYVRFFPCDICSKKFTIRASLLSHKHIHEAKKHACDVCKKEYTWRVDLVTHMFVHSGIKPYSCDICKKAFATRNRIAAHMLVHTGVKPHSCGICKERFKYRWNLTKHYWLSHSRPDHRPHACDVCNEAFKTRERLLTHKQTHYEAKHAFG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -