Talt004862.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- -
- Assembly
- GCA_947859335.1
- Location
- OX401971.1:25381786-25406562[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.006 0.38 11.6 0.3 1 23 233 255 233 255 0.97 2 12 0.1 6.6 7.7 0.2 2 23 263 285 262 285 0.94 3 12 0.69 44 5.1 0.3 1 23 369 392 369 392 0.82 4 12 0.0038 0.25 12.2 0.1 1 19 396 414 396 418 0.88 5 12 0.00021 0.013 16.2 0.4 2 23 425 447 424 447 0.93 6 12 4.9 3.1e+02 2.4 1.7 2 14 452 464 451 474 0.69 7 12 0.00064 0.041 14.7 0.1 1 20 489 508 489 513 0.91 8 12 4.8 3.1e+02 2.5 0.0 6 22 526 542 526 542 0.93 9 12 0.88 56 4.8 0.1 3 23 588 607 587 607 0.93 10 12 6 3.8e+02 2.2 0.1 1 14 612 625 612 635 0.69 11 12 6.8 4.3e+02 2.0 4.4 1 23 640 663 640 663 0.95 12 12 0.072 4.6 8.2 6.6 1 19 669 687 669 692 0.91
Sequence Information
- Coding Sequence
- ATGTGGGACGTGAGAGCCTGCCGCGGCTGCCTCGCCGTGAAAGGCAAGTTGGAGAAAATAGGTGATGCCTTCAAGAGGCTCTATGAAGCTCTAACTGGTCTCCAGGTTACGTACAGCGACATCGTCACAGTGAACCGCAAGAAGACCAATCTAGAATCTTCTCTGAACTTCTGGGAACCACTGAAAACCAGCTACCTTGTTATGAATGAGGATGATCCTGTACAAAATATATTAGTTCCCGCTGAGCGCACTTACAGTACGTACAACACGCGAGTAGTTGGTATAAAGCCTGAGAAAGAATTTGAAGTTGTCAAAGAAACAACTACAGCCGTAGAAGAAACTACAGCGATAGAAGAAGCTGAAGCCATAGAAGAAAGTCTGGATCCATCAGATATAGGTAACGATGACGATGACAATACTGAACAAGAACCACTCGACATTGATTTGAATGACGTTTTCAAAGATCTCAACGACGAAGCTGTTGATGTAAGTGATAACGAATCCACTGTGGAAGCGCCTAAAAAAGTGGTAGAAGTAAAATCAAGAGAAGATGCTTTTGAAAGTCAGAGTAGAAAATTGAGAACCACGCCAGTAATTAAGGCGTTGGAGATGTGCAGCATTAAGGTGCTGAGTTTGGAAGAGCAGATGCAAGTTATGGATGTTCGGAGGATGAGGGAGCCGTTCTATCTCGCGCATTATAAGTGTTCGATGTGTTTAACTGTGTACAGAACCATGGACGAGCTGGTGCAGCATGTGGAGTACCATAATAGTAGACGCACTGGCCTCGAGTGCGAAGTGTGCAGAAACAAATTCCCGACGGCCGAGGAGATGACTATGCACACAGCTCGGTTTCACTTGTATGAGTACAAGTGTAAGTGTAACGCGACGCACTACTCCCTGTACGACATCGTGCAGCACAGCAAAACCTGCTCGTACAATCGTAAAAAGCTGATGGCCGAGAGAAAAAAAACCGTGTACGAAAACTTGCGGACTTTCACTATCATCAGTTTGTCGCAGAGAATGATGGCAGAAATGCAATTGCTGCGGCCGGAGCAACCGGAAACCACAAAGCAACAGGAACCAAGATCGAAGCTGGCCAACAACTATAAATGTGATATTTGCGGTATATGGCTTTTCTCGCACCGCGCTATGGAGAAACACATTATTTTGTCGCACAAGTATCTCTACACGTGTAACATCTGCAAGGAGGTTTTTAGTAGGCGAGCGGAGGCAATGCTCCACGCGCCGACGCACAAAAGGGCGAAGCCGTTGGTCTGTCCCGAATGCGGCATGAGTTTCGTCAAGAGGCATTCTCTCAGCGTGCACCGCGGGAAGGCGCATCTCCCGAAGACTCCATGCAACATGTGCGGGAAGTCCTGCTTGTCGCGCGTCGCGCATTTGAGGCACCAGCTGCTCAAGCATAAGTATATCAGCCTCAACGACCCACTATTAGGGGATCCGCAATACAAGTGCGTGGACTGTGGCGTGCAGTTTGTGGACAAGCGGAGTCTGGAGACGCACGTAGTGTCCGTCAACCACACCGGCGCGAATCTAGTCGAATTCGCTTGCATTCCGTGCAGAAAGATATTCGAAAACGAGGAACAAATGGAGACACACCTAATTACTTGCGTGAACCCCAAGAAGTATCCCAGACAATGTTGCTATTGTGAAGAAATCCTCCTGGACAGTATTCATTACAAATGCCACTACATACACATGCATCCAAATCTGCAGTATCGGTACGCCAGCAACAACGCCATCTGCGAACTATGCGGGAAATTGATATTCAAACCGCAACTGGAAGCGCACTTGAAGTCTCACTCGGGCACGCACTACGAGTGCCGGCACTGCGGCGTGGCCAGCGCGGCGCCCAGCGCGCACGTGGCGCACGTGCTGAGCGCGCACGCGGCGCGCCCCTACTGCTGCGCGCTGTGCGCGCGCCGCTTCCAGTACCGCAGCGATTGCAAGGACCACATACTCAAAGTACACGCACCAGCGAAGCTGTACAAATGCGAATTCTGCGGTTACGAGTTCTCCTACTTCCGACACTTAAAAGACCACTGTGAGAAACTGCACAATCTCATCATCCCACCCGTTAAAACTAGACCAATTAGAAATAAAGAAAAAATATTCGTCTACGCTCATATGGAAATAGAAATCAGCATGCTAGAAAAAGAAATAGTCGAGAAAGCCGACATACATATGCTGGATTACCTCGATCAAAAATCGAAACCCGTGGATTATAAGAACTTCTTCAGATTCAACTCTGAAGCCGACGAATATGTCGTTAGGATTGATAAAAGAACACGCAAGAATAAACGTAGACAACGCAAATACTACAAGAAAATCAAGATTGAAAGTGACGTCCTAATAAAACCAGGGGATGAAGAATTAAAAAATGAATTCAAATTTCATTTTAATCTTAATAAAGAAGAACCCAAAGTAAAAATAGAGATGATTGGAAACGAAATTGAGAATGCTGTTAGAGGACTAGAGATTGAAGAATTAAAATACATGAAACATGAAGTGATGATGGAAGAAGAGATTATGGCGCAAGATGTTATAGAGCCAGATGTTATACACCGAGAAGTTATGGAGCAAGATGTTACAGAGCAAGAAGTTATGGAGCAAGATGTTATAGAACAAGCAGTAGAGCAAGTGGACCAAGAAATAATCGAACAGGAAATGGGACATGACATGACGGAGAATGAATTGGTGACTGAAGGGACGGAGTTGGAAAATAAGCCATTGGAAGTGATTGAAACTGATGGGCATCAATATGTGACGATTGCCGGACAACTGTACAGGATTGCATGCGATGACGAAGATTAA
- Protein Sequence
- MWDVRACRGCLAVKGKLEKIGDAFKRLYEALTGLQVTYSDIVTVNRKKTNLESSLNFWEPLKTSYLVMNEDDPVQNILVPAERTYSTYNTRVVGIKPEKEFEVVKETTTAVEETTAIEEAEAIEESLDPSDIGNDDDDNTEQEPLDIDLNDVFKDLNDEAVDVSDNESTVEAPKKVVEVKSREDAFESQSRKLRTTPVIKALEMCSIKVLSLEEQMQVMDVRRMREPFYLAHYKCSMCLTVYRTMDELVQHVEYHNSRRTGLECEVCRNKFPTAEEMTMHTARFHLYEYKCKCNATHYSLYDIVQHSKTCSYNRKKLMAERKKTVYENLRTFTIISLSQRMMAEMQLLRPEQPETTKQQEPRSKLANNYKCDICGIWLFSHRAMEKHIILSHKYLYTCNICKEVFSRRAEAMLHAPTHKRAKPLVCPECGMSFVKRHSLSVHRGKAHLPKTPCNMCGKSCLSRVAHLRHQLLKHKYISLNDPLLGDPQYKCVDCGVQFVDKRSLETHVVSVNHTGANLVEFACIPCRKIFENEEQMETHLITCVNPKKYPRQCCYCEEILLDSIHYKCHYIHMHPNLQYRYASNNAICELCGKLIFKPQLEAHLKSHSGTHYECRHCGVASAAPSAHVAHVLSAHAARPYCCALCARRFQYRSDCKDHILKVHAPAKLYKCEFCGYEFSYFRHLKDHCEKLHNLIIPPVKTRPIRNKEKIFVYAHMEIEISMLEKEIVEKADIHMLDYLDQKSKPVDYKNFFRFNSEADEYVVRIDKRTRKNKRRQRKYYKKIKIESDVLIKPGDEELKNEFKFHFNLNKEEPKVKIEMIGNEIENAVRGLEIEELKYMKHEVMMEEEIMAQDVIEPDVIHREVMEQDVTEQEVMEQDVIEQAVEQVDQEIIEQEMGHDMTENELVTEGTELENKPLEVIETDGHQYVTIAGQLYRIACDDED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -