Talt008399.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- ush
- Assembly
- GCA_947859335.1
- Location
- OX401974.1:16825359-16829112[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0077 0.49 11.3 0.2 1 20 118 137 118 139 0.94 2 9 9.1e-05 0.0058 17.3 0.9 1 23 176 198 176 198 0.98 3 9 0.016 1 10.2 1.0 2 20 228 246 228 248 0.93 4 9 0.02 1.3 9.9 3.9 2 21 486 505 485 506 0.95 5 9 0.0052 0.33 11.8 0.3 2 20 533 551 532 553 0.91 6 9 1.2 76 4.4 0.0 2 23 579 600 578 600 0.94 7 9 0.0089 0.57 11.1 1.3 1 23 606 628 606 628 0.99 8 9 0.92 59 4.7 0.4 1 23 665 688 665 688 0.95 9 9 0.19 12 6.9 0.7 2 20 722 740 722 742 0.92
Sequence Information
- Coding Sequence
- ATGTTAGCAGACTGTCTGCACACAAAAGTTTATACCGGTGAGGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCAGGAGAACCTCGCACGCCGAGCTCGTCGGGCGAGCGCGCCGCGTCGCCCGCGTCGGCACCCGCGTCGCCGACCGCGTCGCCGCCGCGCCTGCGCCTCAACGCGCGCCTCGCCACCGACCCCGCGCTGGCGCCGTCGGCCACGGCGCTCAAGCGCGAGCCGCCCTCGCCGCCCGCGCCCTCGCCGCCGCCGCCGCCCACCGCGCAGGCGCAGGCTAGGGACTACCTCGCGCTGACGGCGGCCTTCCCCGCCCTCTTCCCGGTCGGCCCGACGGGCTACATGTGCACGCCGTGCGGAATCCGCTATTCTTCCCTGAGCACGCTCCAGGCGCACCAGGAGCACTATTGCTCGGCCAGACGGCCCAAGCCCTCGGATTCGGCGGAACCCGGAGATGCTGCCGCGGACGAATCCAGCGGCGACGCGAAAACGCCGAGAAGAACCGGCAAGCAATACGCTTGTACGTACTGCTCGTACAGCGCTGACAAGAAAGTCAGTCTCAACAGACACATGCGCATGCATTCTTCGTCCCCGGTCAGCAGCGGAACGCCCGCACCGACGCCGACCTCGAACGGAGAAGCGACCGAAGGCCAGCCCTCGTCGGATCGCTACTGCACCGACTGCGATATCAGATTCAGCTCGCTCCAAACCTATCGAGCGCACAAAACACATTACTGCAGCACGAGGCAGGTTGTCAAACCGGCCACAGCATCAGCGAGAGGAAGTTCAGTAACGTCGGGATCCGCTCCACCCTCCCCTGGGGCGACCCCGCCCGCCCAGAACCAATACGCACTAGCCCTGCCGACTAACCCTATTCTCATCGTGCCGTACTCTCTGCTGCGAAGCGCGAGCACCCTCCCAGGTGCGACGCTCCCGGATCCGGACACACCATGCTTTTTACTCCCCAACGGCACCTTCCAACCTCTAAGCCGAGCTTTACCAAATATGAATTCAGACGGAAAGGAAGCAGAAGTTCTTAAGTCAGCGAATCGGCCTCGCGAATCCTTAAAAGACGGGGGGACGCCGTTGGATCTCAGCGTACGGCGAACTCCCGAATCGGTCGGGACCGATGAACATGAGAAAGAAAACCGATTGAGATCGGCGACACCGGAGCAAATAGTGTGCGCGCCCTCGCTGCCGGGGTCGCCGGGCACGCCCTCGCCGCGCCGCTCCTCCTCACCCAGCGGAGAAAGCTCACCCAAGCGCCGCCGGCGAGACTCCCGAGGCCCCACACCGAAACCCCAAAGCATTCCTTCCCCACCCGAAGATAAGTTCACGCCAGTGACGCCAGCCGTCTTACCGCCCGGTCTAGCCATGCGTTTAGCCTCAGAACTGCCATCGGCGGCCGCGTCACCGCAAGTCCTAGTCAAGCAGGGCGTCTCGAAATGCAAGGAGTGCAACATCGTCTTCTGCAAATATGAGAACTATCGAATCCACAAGCGGCATTACTGTTCGGCGGGCGGTGACGAGCGCGCGAGTCCCGCGCCGCCCGAGCCGGGTCCTCCGCCTCAGTACCGTCAGCTCTACTGCTTAGCTTGCGGCATTCACTTCAGCTCGCTGGATAATCTGACGACGCATCAGTCGTACTACTGCACGAAGCGCGAGACGCGCTCCCCGCGGGCGGCGCCCGAGGCGCGCGCGGGCGGCGCGGAGGGCGGCTGGAAGTGCCCGTGCTGCGACGCCGTGTCGGCCACGGCGGCCGCGGCGCAGCGCCACATGGAGGCGCACGCCGGCGTGCGCGCCTTCCGCTGCACCATCTGCCGCTACCGCGGGAACACGCTGCGCGGCATGCGCACGCACATACGAATGCACTTCCCGAAGAAGTCTGCTGATTTGCAGGAGGAGACCTACATAGCCTGCGTGCTGGAGGACGAGAGCCGCGAGAGCACGTCGCCGGCGCCGGCGCCGGGCGAGCGCCTGCACCGCTGCGGCGCGTGCGCCTACAGCTCCACGTACCGCGGCAACGTCGTGCGCCACGCGCGCCTCGTGCACGCCGCGGACGAGCCCGAGCCGGAACAAACCTCCCCCATCCCAATCCCCGTCGCCGACATAAAGAAAGAACCCGAAGCGGAGCTCGAAGAGACCCCGAACTATTGCAAATCATGCGACATATCATTCAAATACGTGAACACTTATAAGGCGCATAAACAGTTTTACTGCACGGCCAATAACCAAGATGCCGCGGCAAATAATAACGTATCGCCAGCGCTGCCAACTGCTAGGGTCAACGAAGTGCTATGA
- Protein Sequence
- MLADCLHTKVYTGEDEEWGNESEAMPGEPRTPSSSGERAASPASAPASPTASPPRLRLNARLATDPALAPSATALKREPPSPPAPSPPPPPTAQAQARDYLALTAAFPALFPVGPTGYMCTPCGIRYSSLSTLQAHQEHYCSARRPKPSDSAEPGDAAADESSGDAKTPRRTGKQYACTYCSYSADKKVSLNRHMRMHSSSPVSSGTPAPTPTSNGEATEGQPSSDRYCTDCDIRFSSLQTYRAHKTHYCSTRQVVKPATASARGSSVTSGSAPPSPGATPPAQNQYALALPTNPILIVPYSLLRSASTLPGATLPDPDTPCFLLPNGTFQPLSRALPNMNSDGKEAEVLKSANRPRESLKDGGTPLDLSVRRTPESVGTDEHEKENRLRSATPEQIVCAPSLPGSPGTPSPRRSSSPSGESSPKRRRRDSRGPTPKPQSIPSPPEDKFTPVTPAVLPPGLAMRLASELPSAAASPQVLVKQGVSKCKECNIVFCKYENYRIHKRHYCSAGGDERASPAPPEPGPPPQYRQLYCLACGIHFSSLDNLTTHQSYYCTKRETRSPRAAPEARAGGAEGGWKCPCCDAVSATAAAAQRHMEAHAGVRAFRCTICRYRGNTLRGMRTHIRMHFPKKSADLQEETYIACVLEDESRESTSPAPAPGERLHRCGACAYSSTYRGNVVRHARLVHAADEPEPEQTSPIPIPVADIKKEPEAELEETPNYCKSCDISFKYVNTYKAHKQFYCTANNQDAAANNNVSPALPTARVNEVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00050390;
- 90% Identity
- -
- 80% Identity
- -