Talt014506.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- -
- Assembly
- GCA_947859335.1
- Location
- OX401972.1:3805667-3825265[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.1 1.3e+02 3.6 1.6 1 18 51 68 51 68 0.90 2 13 0.44 28 5.7 1.4 1 23 173 195 173 195 0.98 3 13 0.0065 0.41 11.5 1.9 1 20 199 218 199 221 0.91 4 13 0.00037 0.024 15.4 3.4 1 23 226 249 226 249 0.97 5 13 0.2 13 6.8 0.2 1 23 255 278 255 278 0.86 6 13 0.44 28 5.7 1.4 1 23 388 410 388 410 0.98 7 13 0.0065 0.41 11.5 1.9 1 20 414 433 414 436 0.91 8 13 0.00037 0.024 15.4 3.4 1 23 441 464 441 464 0.97 9 13 0.2 13 6.8 0.2 1 23 470 493 470 493 0.86 10 13 0.2 13 6.8 2.3 1 23 499 522 499 522 0.96 11 13 0.12 7.5 7.5 1.2 3 23 530 550 528 550 0.90 12 13 6.6e-07 4.2e-05 24.1 0.6 1 23 556 578 556 578 0.99 13 13 0.0001 0.0064 17.2 5.5 1 23 584 606 584 606 0.97
Sequence Information
- Coding Sequence
- ATGTCAATTGACACGTATTTTTGCTTCTGTTGCTTGTCGACAAACGATTTAATGAACTTGTTCAGTGAAAGCCAAGATACAAATTATTCTGCCATTCTCATGGATTTGTTTTCCATAAAACCTTTACAAGCAGACTATGAATATGACAGCTACATCTGTACCGAGTGTGCCAAGTGCCTCAAGGATGCACGGAAGTTCAAACGACAAGTGCTGGATACTTTAAACGCATTGCAGGTCAATGGTTTAATAAAAACGAACAAAACTGCAGAGCACATGATTATAGCAAAAGTATTCAACGAATATGCCTCAGATTTGGATGAGAAATATGCCCTCGACAAATTAGATGATAAAAAACTAAATGAAGAAGTTAAACATGATATAAAATACCCAGACCCCATCAAACTGGAACACGAGAAAACGATAATGTTAGAAAGAGAGAAACGCATAACAGTACCAAGAAAGAAGAAGAAAGAACCTACAGTGAAGAGCGAGGTGCTGCATGAAGTTACCGAGGATTTCAAGTGTACTGTGTGTGCCGTGACGTTGCCGAATATGTATGTGTATCACACACACATGAATAGACATTTCCCGAATCATATTTGTGACACATGTGGAAAAGGTTTCTTAACGAAGAAGAGGCTCAAGAGGCACATGCCGTCCCACATAAAAGGGCCCTTCGAATGCAAGGAGTGCAATACAACGTTTAGCAATTATAATACTATGAACTCACACAGGCAGCGCAAGCACAAATCGATAGAGCTGTACGCGTGCCCGCAGTGCCCGGAGCGCTTCGGCACGATGACGCGGCGCGCGCGCCACCTGTCCGCGCAGCACGGCGCGCGCGCGCCGCACCGGTGCGGGGTGTGCGCGCACCGGTTCCTGCTCGCAGTAATAAAAACGAACAAAACTGCAGAGCACATGATTATAGCAAAAGTATTCAACGAATATGCCTCAGATTTGGATGAGAAATATGCCCTCGACAAATTAGATGATAAAAAACTAAATGAAGAAGTTAAACATGATATAAAATACCCAGACCCCATCAAACTGGAACACGAGAAAACGATAATGTTAGAAAGAGAGAAACGCATAACAGTACCAAGAAAGAAGAAGAAAGAACCTACAGTGAAGAGCGAGGTGCTGCATGAAGTTACCGAGGATTTCAAGTGTACTGTGTGTGCCGTGACGTTGCCGAATATGTATGTGTATCACACACACATGAATAGACATTTCCCGAATCATATTTGTGACACATGTGGAAAAGGTTTCTTAACGAAGAAGAGGCTCAAGAGGCACATGCCGTCCCACATAAAAGGGCCCTTCGAATGCAAGGAGTGCAATACAACGTTTAGCAATTATAATACTATGAACTCACACAGGCAGCGCAAGCACAAATCGATAGAGCTGTACGCGTGCCCGCAGTGCCCGGAGCGCTTCGGCACGATGACGCGGCGCGCGCGCCACCTGTCCGCGCAGCACGGCGCGCGCGCGCCGCACCGGTGCGGGGTGTGCGCGCACCGGTTCCTGCTCGCAGGCAACCTGTCGACGCACATGCGCAGTAAGCACCTCAGAGTGAAGCGCCATCTGTGCGCAGAGTGCGGCGCAGGATTCTTTCACCGGCATGAGTTGCGCGGTCACGCGGCGGCGCACACTGGTCAAAACGAGTTCCAGTGCACGCTGTGCCCTAAAAGCTACCCCCGTAAGAAAGCGTTAGACGTTCACATGCGCACGCACAGCGACGATCGACGGTTCTGCTGCGACAAGTGCGGCAAGAAGTTCGTGCAAAAATGCACCTTGAAGGCGCACGCTAAGGTCCACAATCGCGAGGACGAGAAGCTAGGGGTGGCGCAAAAAAGTTTTGTACAACTTGCTTGA
- Protein Sequence
- MSIDTYFCFCCLSTNDLMNLFSESQDTNYSAILMDLFSIKPLQADYEYDSYICTECAKCLKDARKFKRQVLDTLNALQVNGLIKTNKTAEHMIIAKVFNEYASDLDEKYALDKLDDKKLNEEVKHDIKYPDPIKLEHEKTIMLEREKRITVPRKKKKEPTVKSEVLHEVTEDFKCTVCAVTLPNMYVYHTHMNRHFPNHICDTCGKGFLTKKRLKRHMPSHIKGPFECKECNTTFSNYNTMNSHRQRKHKSIELYACPQCPERFGTMTRRARHLSAQHGARAPHRCGVCAHRFLLAVIKTNKTAEHMIIAKVFNEYASDLDEKYALDKLDDKKLNEEVKHDIKYPDPIKLEHEKTIMLEREKRITVPRKKKKEPTVKSEVLHEVTEDFKCTVCAVTLPNMYVYHTHMNRHFPNHICDTCGKGFLTKKRLKRHMPSHIKGPFECKECNTTFSNYNTMNSHRQRKHKSIELYACPQCPERFGTMTRRARHLSAQHGARAPHRCGVCAHRFLLAGNLSTHMRSKHLRVKRHLCAECGAGFFHRHELRGHAAAHTGQNEFQCTLCPKSYPRKKALDVHMRTHSDDRRFCCDKCGKKFVQKCTLKAHAKVHNREDEKLGVAQKSFVQLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -