Talt004922.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- -
- Assembly
- GCA_947859335.1
- Location
- OX401971.1:26176566-26195161[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.016 1 10.2 1.3 2 23 491 513 490 513 0.93 2 10 0.84 54 4.8 0.6 1 23 534 556 534 556 0.94 3 10 6.5 4.2e+02 2.0 1.3 1 10 560 569 560 583 0.82 4 10 0.058 3.7 8.5 0.9 1 23 586 609 586 609 0.92 5 10 8.8e-05 0.0056 17.4 0.1 2 23 622 644 621 644 0.95 6 10 6.1 3.9e+02 2.1 3.1 1 21 653 673 653 678 0.93 7 10 0.0046 0.3 12.0 5.0 2 23 689 711 688 711 0.93 8 10 5.5e-05 0.0035 18.0 1.2 1 23 717 740 717 740 0.96 9 10 6.4e-06 0.00041 21.0 0.8 3 23 751 771 750 771 0.99 10 10 0.00014 0.0091 16.7 0.1 1 23 777 800 777 800 0.98
Sequence Information
- Coding Sequence
- ATGTACAGCATCAAGACGGAGTTCGGAACCGCTATATGCCGCGGCTGCCTCAGCACCGACCGGAGGCTCTTGCCATTGACTAATAATAAATCGTTCTTTAATCTTTTGACTGATAAACAAAAACAAGAGGTACGGGCTTTGATGGATTTGGAACTACTTATGTGCTGGGAGTGCACTGCTGCCCTGAAAAGGATGCAGTTGTTCCAGGCACAGGCACAAAAAGCTCATATGGTTCTTGAGCAGCATTTTAACAACCCCTTGAGTATCTCTAACCATGGTCAAGTGAAGGCCTCCATAAAATCTTTATCCTCGCTTACAACTTTTCATACACAATATTATGACGCTAGATTTATTGAAATTGAAAGAATAAAGAAACCGCCTGAACGAATTAATCCCACTATAGGCCCTGTAATTACCCCCATTAAAATAGAAAACGTTTTAACTGTAAAATCTGATGATGAAATGAACGAAGATGATTCTTCTAATGAAATTGAAGATACGGATCACCTTGAAGTTAATGCAGATTTTAGTTTAGAACAAGAAACTGTGATGGATGAAGTAGAACAACCATGGAAAAAATATTTCTCAGTTTTGAAAAATATGCAGCAAAGAAAAGAGATAGCTAATGTAGCTGTAAGAAACACGAAAATTAAAGTGAAAAATTTAGAAAATGAAGAGTTTTATAAGACAAGAAATAACACGAGCGAAACAATAAAAAGGCCTCCTTCGGCGCGTATTAAAAAGCTTGTACGGTCCAAAATGAATGTAAATGAAATAAAGAAAGTTACTGGAAAAAAGAAAACATCAAAAAGAGCAGCTAGTCCAATCCAGTCTAGTCAAGGGCTCAGAAGATCAAAGCGAAGATCTGGAATAGTAGAAGTCGGCGAAAGAGAAAATTCAAAAGAATTTTATGTAGAAATTGGTGATGATATTGGAAAAAATAATGTAGAATTAATAAAAGAATATAATGAAAGTGATAGTGATATTGGCGGGAGAGATGATGTTGATCTGATTAATTTAAACAAAAACTGTGAGAATGAACTAAAGGCCAATAAAATAGTGCTTATTGAAAAAGAAAATGCAAATAGCACTGGTAATGGTGGCAGAGATGATGATCATATAGATAGTATGATTTGCGAAAGTTTAGAAGCAGCTTCAAGCAAAATTTCAGAGCAAGAGCTTATTGAAAAAGAAAATGCAAATAACACTGGTAATGGTGGCAGTGATGATGATCATACTGATAGTATGAATTGCGAAAGTTTAGAAGCAGCTTCAAGCAAAATTTCAGAGCAAGCTAATAAAGAAGATGAAAATGATAATAAAGTTCAATGGGTTGATTTTGGAAAAACACTAGTTGAATATAAATCTGGTGAATTAGATACTTATTTTACTAAACTTGAATTGAGTGAGGAAGAGACAGAAGTTGCATTACAAAGAGAGCCTAAATATATAACTAAGGAATTGCCTTGGAACTGTGATTATTGCGGTCTTTGTTTTCAGGTACAAAGAACTATGATCAACCATAAGAGGGACGTTCATAAACAGCTCAGGAAGATGTTAAACCAAATCAACCCGAATATCTACTACCGTGACAGCGTGTTCCGATGCAACCAGTGTCCTGCTGTTTTAAGGGAGACCCACACTGCAGCTCACATGAAATATGTCCACCGGTTCAAATACAATTGTAAACATTGCGACGTGGAGTTTTGGAACAAAGAAGAGTGCAAGCCGCACATGGCAGCCAATCACAGCCAGTTCGAGTGCGACATCTGCTCGGAGATCAGATCCAGCTTGAAACTCTTGCAAAAGCACAAAGCACACGACCACAAGGTCCGTCAACCTAAGTCGAATAATAATCCGTTACAATGCGAGGAGTGTGGCAAGAAGGTCTCCTCGAGCTGGTACCTGATCGCGCACCAGGAAATGAAGCATCCACGCGAAGGCACCGACCCCCGATTCCATTGCGCGTCGTGCAATTTCACGCTACGCAGCGAAAGGCACTACCTCTGGCACTTGAAAAACTCTAAAGCACATAACCCTGATGTTAAGAAACTTCCCAGATGTTCTTGCCCGGCATGCGGAAAAGTGTGTAAAAGTAAATATGAGATGAAGCGGCACTATGATCGATTCCACAGCGACAAAACTGATTTCCCGTGCAAAATCTGTGGCAAGTATTTATCTCGGAAAAGCGGGTTGAATTACCATATTAACCACGTCCATTTAAAAGTACAGCCGCCCAAGGATAAGTTGTGCACTATCTGCGGCCAAGGCTTTTCCAGTAATCGGACGCTGAAGTATCACATTCGTACACACACGGGTGAGCGTCCGTACAAATGCACGCTCTGCCCCGCGGCGTTCGCGCAGCCCTGGCCGCTCAAAAAGCACCAAGCAACGCAGCACCGACACCGCACCACACAAAGCAACACAAAAGACACAACTGAACAAATACATGAAGTTAAATCGCAAAAGTTAGATCAAATAATAGAATCGCGAAGCCAAGATGAAATTAAATCACAAAGTCTAGCTGAAGTTATAGATGAATCAACAAGTCCAGATGATGTAATCGTAGAATCAACGAACCAAGATGAAGTAATTGCCAGAGCTGATTTAGACGACAGTGTAATTACAAATTAA
- Protein Sequence
- MYSIKTEFGTAICRGCLSTDRRLLPLTNNKSFFNLLTDKQKQEVRALMDLELLMCWECTAALKRMQLFQAQAQKAHMVLEQHFNNPLSISNHGQVKASIKSLSSLTTFHTQYYDARFIEIERIKKPPERINPTIGPVITPIKIENVLTVKSDDEMNEDDSSNEIEDTDHLEVNADFSLEQETVMDEVEQPWKKYFSVLKNMQQRKEIANVAVRNTKIKVKNLENEEFYKTRNNTSETIKRPPSARIKKLVRSKMNVNEIKKVTGKKKTSKRAASPIQSSQGLRRSKRRSGIVEVGERENSKEFYVEIGDDIGKNNVELIKEYNESDSDIGGRDDVDLINLNKNCENELKANKIVLIEKENANSTGNGGRDDDHIDSMICESLEAASSKISEQELIEKENANNTGNGGSDDDHTDSMNCESLEAASSKISEQANKEDENDNKVQWVDFGKTLVEYKSGELDTYFTKLELSEEETEVALQREPKYITKELPWNCDYCGLCFQVQRTMINHKRDVHKQLRKMLNQINPNIYYRDSVFRCNQCPAVLRETHTAAHMKYVHRFKYNCKHCDVEFWNKEECKPHMAANHSQFECDICSEIRSSLKLLQKHKAHDHKVRQPKSNNNPLQCEECGKKVSSSWYLIAHQEMKHPREGTDPRFHCASCNFTLRSERHYLWHLKNSKAHNPDVKKLPRCSCPACGKVCKSKYEMKRHYDRFHSDKTDFPCKICGKYLSRKSGLNYHINHVHLKVQPPKDKLCTICGQGFSSNRTLKYHIRTHTGERPYKCTLCPAAFAQPWPLKKHQATQHRHRTTQSNTKDTTEQIHEVKSQKLDQIIESRSQDEIKSQSLAEVIDESTSPDDVIVESTNQDEVIARADLDDSVITN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -