Talt004739.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- -
- Assembly
- GCA_947859335.1
- Location
- OX401971.1:23649778-23667108[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0037 0.24 12.3 1.8 1 23 355 377 355 377 0.98 2 9 0.016 1 10.3 5.4 1 23 391 414 391 414 0.96 3 9 0.12 7.4 7.6 0.1 1 23 418 441 418 441 0.93 4 9 0.0064 0.41 11.5 0.5 2 21 453 472 452 477 0.92 5 9 0.33 21 6.1 1.0 3 20 487 504 487 506 0.93 6 9 0.0036 0.23 12.3 0.3 2 23 523 545 522 545 0.95 7 9 4.6e-06 0.00029 21.4 0.1 1 23 558 580 558 580 0.95 8 9 0.00013 0.0082 16.8 1.7 3 23 597 617 596 617 0.97 9 9 8.9e-07 5.7e-05 23.7 2.5 1 23 623 646 623 646 0.94
Sequence Information
- Coding Sequence
- ATGGCACCGCCATTCGTTGCTTGTCGTATTTGTTATAAAGTAGAAGGAAAATTGAAAAATTATAAGGACGACGAATTTTACATTCAAGCGTATGAAGATTTGACCGGATGTCCATTTGACGATCTGCTGTACATAACTAAATTCTGTCCAATATGCGCCTGCCTGCTCAAGAAAATGTACTTATTCCGGAAGTATTGCCGCTCTAGACATAATTCTTTGATAGACTATTTGAACACGGGGAGAAAGATGACAAAACCCTACGTGTATGCCTTAGAGTACACCAGAAAGCGGCACCCAGTCAATCTGGCTCCTTGGAAGGGTTCAACGGTTCTGGACTGTGTACACTCTCTGAAAAAATACAGGTCCAAACTAAAACTGGATGAAGAGGTTTACGTGACGCATCTGGCAGTACCCAAAGACGAAGCCGCTGAAACAGCACACAAAAGTAAGCTCCCAACACGCAAAGACAAGTATATGAATTATGAAGAAGACTTCTGGGAAACTGATTTGAATGATGACGGTGATTTTGATGATGAGTTTCCTGAAGCGATGGAGATAGAGGTGGCATCACCGATGATGGAAGTGGGTGATGCTGTCAAGACGGAGGACTTGGAAGAAGCCACTTTTGAAGATAGAGTTGTTGAAGATAAAGATGCAATCAACCAACTATACCCAAATGATCAAAACAATCGATCAGTTGATCGTCTGGATACTGATCAAGATTCTGTGGATGTGTTGAACAATCAACTAGAGATACAAGTGAAAGACGAGAGGGATCCGGATAATTTGACGCTGCAGGAGATTAAAGAAGAATTACAGTCCGGGACAGGAATGGATGTAGATTATTGCGTTCAGAAAGAAAAAAGAAAGAAAGGGGCTAAGAAAAAAGAGAAAGCCCCCAAACCCACAAAGAAGACTGAACGGCAGCTCCTCCAAGCGAAACGCCAGAAATCCAACCAGGACCTCAAAGACCATTTCATCATCACACCATTCCTCACTGACGAGGAGCAAATCGAGGAGTTCCTGAAGAGGAAGGGGGGTGAGGGGTATTTGGAGGGGCGGTTCAAATGTGAGCTTTGCTTGAAGAGTTTTAAGGAGCAAAAGTGGATGGACACGCACGTCAAAAAACATGAGGCGCTGAAGCATCACGGCTGGCACGAGGGCGTGCAGCACGCGTGCCAGCACTGCGGAGCCACTTTTAGGAAACACACAACGTACATGGGCCACCTGCGGCGCGCGCACCCGTCGTCGTACATCTGCGGCGCGTGCGCATGCAGCTTCGTCAGCGCGTACGGGCTCAATCTACACGTCAAGGCTGTTCACAAGGATATAAATAAGTTAGAAAATGACGGCACCAGGTGTGAAGAGTGCGACGTTACATTTGTCTCACACAAAATGTACATACGGCATGTACTGATAACGGATAAGCACAAAGAAATGTCCAAAGATATACTAGGCTGTCGCAAGTGCGGTGAGCAGTTTGACAGTAAAGAACTAATGGACAAACACACGCACTATAAGGAGAGGAAATTTGTGAGGAGGACTGACGCGCCGAAGAGGACTATTAAATGCGATGAATGCGAAGAAGTATTTTCTCATCCAAACGGAGTGTACCAGCACTATTTACGCGAACACCCGGACAAACCGTACCAGTTTGCTATACAGAGGCACTACCTATGCGAACAGTGCGGGAAAACGTTCAAATCACCAGGCTTGCTACAACAGCACGCCTTAATACATAAGGGCCTCCGACCACCGACGGCTAAGAAGCCGCCCGGCAGGAACTCTTGTAGGTTATGCGGCAAAACTTACAGCAAACTCAGTGGATTGTTCAGGCACAAGCTGACGCACATGGGCGTCAGACGGCACAAGTGCCACATATGCGACAAGGCGTTCACGGACACGTCGAATTTGAAGCAGCACGTGCAGGGCGTCCATCTTAACATCCGCCGCGTCCGGAAGCGGTGA
- Protein Sequence
- MAPPFVACRICYKVEGKLKNYKDDEFYIQAYEDLTGCPFDDLLYITKFCPICACLLKKMYLFRKYCRSRHNSLIDYLNTGRKMTKPYVYALEYTRKRHPVNLAPWKGSTVLDCVHSLKKYRSKLKLDEEVYVTHLAVPKDEAAETAHKSKLPTRKDKYMNYEEDFWETDLNDDGDFDDEFPEAMEIEVASPMMEVGDAVKTEDLEEATFEDRVVEDKDAINQLYPNDQNNRSVDRLDTDQDSVDVLNNQLEIQVKDERDPDNLTLQEIKEELQSGTGMDVDYCVQKEKRKKGAKKKEKAPKPTKKTERQLLQAKRQKSNQDLKDHFIITPFLTDEEQIEEFLKRKGGEGYLEGRFKCELCLKSFKEQKWMDTHVKKHEALKHHGWHEGVQHACQHCGATFRKHTTYMGHLRRAHPSSYICGACACSFVSAYGLNLHVKAVHKDINKLENDGTRCEECDVTFVSHKMYIRHVLITDKHKEMSKDILGCRKCGEQFDSKELMDKHTHYKERKFVRRTDAPKRTIKCDECEEVFSHPNGVYQHYLREHPDKPYQFAIQRHYLCEQCGKTFKSPGLLQQHALIHKGLRPPTAKKPPGRNSCRLCGKTYSKLSGLFRHKLTHMGVRRHKCHICDKAFTDTSNLKQHVQGVHLNIRRVRKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -