Talt014811.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- -
- Assembly
- GCA_947859335.1
- Location
- OX401972.1:8723404-8725580[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.9e-05 0.0025 18.5 1.4 2 21 167 186 166 187 0.94 2 11 6.4 4.1e+02 2.1 0.1 12 23 203 215 194 215 0.79 3 11 0.012 0.74 10.7 0.3 1 23 220 243 220 243 0.95 4 11 1e-05 0.00066 20.3 0.9 2 23 249 270 248 270 0.95 5 11 0.00082 0.053 14.3 1.8 2 21 274 293 273 294 0.92 6 11 0.062 4 8.4 0.1 2 23 337 359 336 359 0.93 7 11 4.5 2.8e+02 2.6 1.9 3 16 367 379 366 386 0.65 8 11 0.0005 0.032 15.0 0.2 1 23 392 414 392 414 0.98 9 11 0.0012 0.075 13.8 0.4 1 23 420 443 420 443 0.96 10 11 0.0069 0.44 11.4 0.2 1 23 452 475 452 475 0.96 11 11 0.011 0.7 10.8 6.6 1 23 482 504 482 504 0.98
Sequence Information
- Coding Sequence
- ATGAACCGGCAAGTGGACATAAAAGCTTTGGTTTCTCACATAGTGAGAGGCGACGGTTTGGACAAATGCCGAATTTGTATGGGGGATACAACTGAAGGCCAAGTTTACCTCGGGGATACCGTTATGATGGACGGAGACAAACCAGTGACACTTGCTGAATTACTGGAAATAATCACAGGCATCGAGGTTCCTGTGGAGGAGGACCTACCAGCTGGGCTGTGCACCGTCTGTGCAGCGAGAGCCCTGGAGGCTGCTAACTTCCGAGCTCTATGCCAGAAAGCTGTTAACCAATGGGACACCACGCTACAGCTGCTAAATGACCTACCAACCAAAGATAGACATGTAAAAAGCATGTTCATCATTGTTGATGAGGATCATATCACAGTAGTTGATGATTTCAAGGGTTCGGATAGTAAAAAACTAGCAGCAGATAGATTGACAACACAGCTGGTCCATAAATCTATAGAGAAAACTGTAAGGGAAGTTAAGCATAAATGTCAGTGTCCGGACTGTGGAAAGAAATTTGCGTACCCTCAACATTTGTACTTGCATTTGAAGGAATCTACGGAGTTGAAACGGGCCTGCTACATCTGTGCTCAGATCATGACAAGAGATGATTTGGTTCGGCATTTAAAACTGATCCATAAGCTGGTTACTTATGATTGTAAGAAATGTCCAGCGTTAGTGCGGTCACAAAAGCTGTTTGTGCGGCATATGCAGGAGGCCCATAGTTCAAGCGCGTGCACGTGCGGCGACTGTGGCCGCAGCTTTAAGTCTAAACCGGCTTTCAATGCTCATCTATCCATTCACACTGTCAAAACTTGCCCTGGCTGCGACAAAGTCTTCCGTAATCAAACATGTTATTTATACCATGTAAAAAAATGCTGTGAATTAGACATCAGTAACGAGACACATCGGACAAAACACAGAGTGATGATTGAGGTTCAAAATAAGAAGAGTAGGCGGAAAACTAAAGTAGGACTACGCGGTGCGGCTGATAAAGAATGCATATGTGATTATTGCGGGAAGATACTAGCTGGCAAGAAATTCATAGCCGCTCACATACAAATAGTGCATCTTAAGAACACACACAGGCCGTGTCCGTACTGTGGCAAGCTCCTTGCTTCTGCCCATATGGGAGAACATTTGAAAAAGCACGAACTTGAAATTTCATTCACGTGTGAATACTGTGGTATAGTTTTAAAAACTAAATTGGGTTATGTTCAACATATTCGCCTCCATACTGGAGAAAAACCATACCCTTGTCAATATTGTGGAGAAACTTTTTCAGCTTCTTCTAGAAGATCCGAGCATGTTAGAAAAATACATGAACTAAAAGAAGTTGAGTTAAAATATGCATGCGAGTTCTGTCCAGCAAGGTTTCAACTGCCTTACAAACTTAGGAACCATGTGTCTACGGTTCATAATACGGATATGATGCCGTTTTCTTGTAAGATTTGTCTAGAGAAGTTCAGTAGTTGTAGGGGGTTGACGCATCACAGTAGGAAGCACCAGAAGCAGGGAAATAGTGACTTTAAGGTGTATAGTCAACCGATCATGAGAGAGGAATCTATTGAGCCATAG
- Protein Sequence
- MNRQVDIKALVSHIVRGDGLDKCRICMGDTTEGQVYLGDTVMMDGDKPVTLAELLEIITGIEVPVEEDLPAGLCTVCAARALEAANFRALCQKAVNQWDTTLQLLNDLPTKDRHVKSMFIIVDEDHITVVDDFKGSDSKKLAADRLTTQLVHKSIEKTVREVKHKCQCPDCGKKFAYPQHLYLHLKESTELKRACYICAQIMTRDDLVRHLKLIHKLVTYDCKKCPALVRSQKLFVRHMQEAHSSSACTCGDCGRSFKSKPAFNAHLSIHTVKTCPGCDKVFRNQTCYLYHVKKCCELDISNETHRTKHRVMIEVQNKKSRRKTKVGLRGAADKECICDYCGKILAGKKFIAAHIQIVHLKNTHRPCPYCGKLLASAHMGEHLKKHELEISFTCEYCGIVLKTKLGYVQHIRLHTGEKPYPCQYCGETFSASSRRSEHVRKIHELKEVELKYACEFCPARFQLPYKLRNHVSTVHNTDMMPFSCKICLEKFSSCRGLTHHSRKHQKQGNSDFKVYSQPIMREESIEP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -