Talt004558.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- -
- Assembly
- GCA_947859335.1
- Location
- OX401971.1:20295019-20306581[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.011 0.69 10.8 0.1 2 23 208 229 207 229 0.97 2 12 0.0003 0.019 15.7 1.5 1 23 235 258 235 258 0.96 3 12 1.3 80 4.3 3.3 1 23 274 296 274 296 0.97 4 12 2e-05 0.0013 19.4 2.4 1 23 572 594 572 594 0.97 5 12 0.0039 0.25 12.2 0.5 2 23 600 622 599 622 0.96 6 12 0.0035 0.22 12.3 2.3 1 20 630 649 630 652 0.93 7 12 0.073 4.7 8.2 4.8 2 23 656 677 655 677 0.97 8 12 0.1 6.5 7.7 0.3 3 23 691 712 689 712 0.95 9 12 6.8e-05 0.0043 17.7 1.2 1 23 718 740 718 740 0.98 10 12 0.00084 0.053 14.3 2.4 2 23 747 768 747 768 0.97 11 12 7.1e-05 0.0045 17.7 1.0 1 23 774 797 774 797 0.97 12 12 0.00048 0.031 15.1 2.2 1 23 801 824 801 824 0.95
Sequence Information
- Coding Sequence
- ATGGATTCCAACGAGCCGAATAAACTGTTAAATGATAATTTAAATGACCACGATATTTTCTCTAGTTCAACGTTGCCCTCTTATGTTGGTGCCGATGTTGTCTTGCCGGGATATAAAGAAGAGTTGACTACGAAAAAGGCTTTAGAACTTTTATTAGAGGGGACGCTTAAGTCGAAAGTGTGTCGCTATTGCTTGAACATTTCCAATTCCATGTCTGAATTGGACCAGGTTCTGCAAATAGCAGGCACGGAGTTGTTGTATAAAGTCACTATACGAGAAATGGTTGCAAGTTTTTATCCTTTTAAGGCTATTATGGATCCAAATTTGCCAAATAAAATTTGCAACAAGTGCCTGAATCGCACCATAAGTGCTTACTTATTCACTCAACAGTGTGAACAGTCAGACAGAGCTTTGCAGAATTATTTCACTGACATGTGCTTAAAACTAGAAAAACTAGACCCTTTGGATAGGACAAGTAAACGAGGGAGACAGAAAAGAAACCCAAACTACAATGTCCTTTACACAGACCACCGAAGAGTTATTGACTATGCCCAACCAATAATTAACATTGTTAATATAGAGACTGTATCAATGAGTACAGAACCAGCTATATCAGAGTTGGAATGCCCTAAATGTTGGCAATTATTTACCAAAATAGAAGATTTGGTAATACATGAGAAAACCCATCCAAGTAGTATGTGGTTTAATTGCCGATTGTGTGGCAAATCGTTTGTCAAACGTTTGCAGTGGAAAAGACATTTGAAGCAAGCTCACAGAGAACCAAAAATGGAGGAAGAAGAGACATGTGAAAATGATAAGTTCCAATGCAAGACTTGTGATTTGACGAGTCAAGATTACAGCTCTCATTTACAACATATGGAGAAGCATAAATTTCAAACTGTTCTTGAGCATTTGGTTGAAAAAGACATGGATAAACTATGTGCGGTTTGCTTAGACAAGCAGCCGAACCTGGTTGAGTTGGATAAAATGGTGCGTCTCCATGGAGGTTATCCGGGAGCCACTGGAGATAAGACCCTATACAGCATCTTGGGATCAACATTGCCCGATATGAATACACCCCTCAACTACACTGGGACCAAAATATGCGAAAAGTGCCTCAACAATGCTATTACAGCGTATGTTTTCATAAACCACTCCATTTACACAAGAGACAGACTTACAACTTGCATTACCTCCATGCAAGACAGTCTAAATAAAGTGGATGATTCTGAGGGTAATATATTTATAGAAATAGCGAATGAATCTATTTTACCTATAAAACAGGAAAATTACTTTGATGAAAACCTGCTACTTGAAGAATACGAAGTAGATGAAGATAAATTAAAAATAGATGTGCTTGAAGATGAATTTAGAAAACCTGACAGCGAGGAAAGCGAGTCGGAAACTGAAATCAAAAACTATATCAACACGTTTCTTATGGAAGATAATGATATTAATGATACTAAAAATTTCATGGATAACAGTGATGATGTAGATATATTTGATGAATTCACTGAAAAGAGAGAGTGTTTTGCGGAAATAGACAATCCAGCTAAGAGAGTAACTAAAACTTATGCCAACAGAAGAATAGTGAATGGATATCATGTCAAAGATCCGTCTGACAATGAAGACTACAATTCATTGGATGATGTCAGTGAATTCCTAACATTTAAAAAGAAAAAGAAGCCCGCTAAACGTTATTATAGATATAAATTCAGGTGTCCTATCTGTAGTAAGAGTTTTGTTACTGATTTCCACTTGCGAAGGCATGTTGTTAAACACGTCAATAGAAAGATAGAGTGTTACGTCTGTAAAGCGGTGTTCAAATCGAAATTCTTCCTATATGAACACATTAAAATGTCCCATATTCTGGACAAGACTGTATATTTCACTTGCAAAGTATGCGGCAGAACTTTCGAGACTGAAGATAAAATTAAGGCGCACGAGAAATGTCACTTAGCTAAAGAATGTCAATTATGTGATAAAATATTCGTTACCCAAAGACACCATGACAATCACATGCAAAGGCATGCAGTCAAATTAAACGTTTCTAACGACAGTAGTCAAATTTGCAGCTTTTGCGAAAAGGACTATACAGACGATAACAAACTCTCGATACACGTTAATAAAGTGCATTTGCAAATAAAACCCTATTCATGTGATATGTGCGAACGCCAATTCTACACGGAAAGCAATTTGGGTAAGCATAGGAAAATACATAATCTGAAGTCGAGAGAAAGCTGTGAATTGTGTAAAAAGAAATTTAGAACGAGAAAAAGTATCGTGGTACACTTAAGAAAACATATGGGCGAGACGCCTTACCGCTGTCCACTGTGTGGCAGAGCCTTTTATTCAGACACTAAAGTCAAAAACCACATGAGAAATTATCACGGAGGTACTCACTATTGCAAGTTGTGTAAAAGTGTATTTTCAAGCAAATATGATCTGAAAACACATGTTATTATGGTTCATAATCACAATGCGTTGTTATAG
- Protein Sequence
- MDSNEPNKLLNDNLNDHDIFSSSTLPSYVGADVVLPGYKEELTTKKALELLLEGTLKSKVCRYCLNISNSMSELDQVLQIAGTELLYKVTIREMVASFYPFKAIMDPNLPNKICNKCLNRTISAYLFTQQCEQSDRALQNYFTDMCLKLEKLDPLDRTSKRGRQKRNPNYNVLYTDHRRVIDYAQPIINIVNIETVSMSTEPAISELECPKCWQLFTKIEDLVIHEKTHPSSMWFNCRLCGKSFVKRLQWKRHLKQAHREPKMEEEETCENDKFQCKTCDLTSQDYSSHLQHMEKHKFQTVLEHLVEKDMDKLCAVCLDKQPNLVELDKMVRLHGGYPGATGDKTLYSILGSTLPDMNTPLNYTGTKICEKCLNNAITAYVFINHSIYTRDRLTTCITSMQDSLNKVDDSEGNIFIEIANESILPIKQENYFDENLLLEEYEVDEDKLKIDVLEDEFRKPDSEESESETEIKNYINTFLMEDNDINDTKNFMDNSDDVDIFDEFTEKRECFAEIDNPAKRVTKTYANRRIVNGYHVKDPSDNEDYNSLDDVSEFLTFKKKKKPAKRYYRYKFRCPICSKSFVTDFHLRRHVVKHVNRKIECYVCKAVFKSKFFLYEHIKMSHILDKTVYFTCKVCGRTFETEDKIKAHEKCHLAKECQLCDKIFVTQRHHDNHMQRHAVKLNVSNDSSQICSFCEKDYTDDNKLSIHVNKVHLQIKPYSCDMCERQFYTESNLGKHRKIHNLKSRESCELCKKKFRTRKSIVVHLRKHMGETPYRCPLCGRAFYSDTKVKNHMRNYHGGTHYCKLCKSVFSSKYDLKTHVIMVHNHNALL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -