Talt004931.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- -
- Assembly
- GCA_947859335.1
- Location
- OX401971.1:26301113-26310186[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00011 0.0068 17.1 0.1 1 23 208 231 208 231 0.96 2 11 0.0013 0.081 13.7 2.6 1 23 238 260 238 260 0.98 3 11 0.064 4.1 8.4 0.6 1 23 264 287 264 287 0.93 4 11 0.0004 0.026 15.3 0.8 1 23 320 342 320 342 0.98 5 11 0.0021 0.13 13.0 1.3 3 22 354 373 353 377 0.90 6 11 0.00091 0.058 14.2 2.6 1 23 418 440 418 440 0.97 7 11 0.38 24 5.9 0.0 6 21 453 468 449 469 0.90 8 11 0.00065 0.042 14.6 0.4 1 23 481 504 481 504 0.89 9 11 0.0063 0.41 11.5 2.6 1 23 510 533 510 533 0.94 10 11 0.00014 0.009 16.7 2.1 3 23 542 563 540 563 0.91 11 11 0.031 2 9.4 2.1 1 23 569 592 569 592 0.97
Sequence Information
- Coding Sequence
- ATGGCTGCCCTAGATCACAGCTTCTGTTGCGGTTGTCTCTGCTCGGGGCGTAAAATGATCGTAATTGAAGATTTTTGGAAAAAGCAGTGTTTTTTGCAAATTATAAGCGAGATACCGATGTGTCAGCCAGAAGGAGTCCCAGTGTGGCTGTGCTGGGAATGTGAGGCGCTCATACGCCGCTTTACTGACTTCAAACAGCAAGTAAAATATGCATACAGGACTTTGCATGAGTTTGGGAAATCGAATTTGAATACGGACCAACTTCACCGAGTACCAAAACTCACCATCCACAAGTCTAGTAACATCAATATAACAGAAAGTCACCAATCCAAACAACCAGACATTGATTCTGAACCAGTTATCACTGAATCACAACCAATAAAAGAGGAAATCAAACTAGAAACACAAGAAAACCAAATAAAATCCGAAATAGAAGCTTCAGACCATGATAATGAAGATGATTTTCTGATAAATTATGTGACACAGAAAAAGAAGAAACACAATGTCAGGAAAAAAAAGAAAAAGGTAGCAGAGCTGTATAAGGAGGTAGAGTTGACGGAGCAAGAGCTAGAAGTTGAAAGGAGAGAGATGGAGTTAAGGGAAGAGTATGTGAATGCAATGTTTAGATGTGATAAGTGTTTAATGTCTTTCCCCAATGCTGATGACTTGAAGGACCATATAGCAGTGAAACATGAGTTGAATGCTGCCCATTACCAATGCCCAATCTGCACATGTTCATTTGTCTCAGAGATCTCGTACAACTATCATACAAACAAACACCGGAGGCGTTATGAGTGCTCCGTGTGCGGAGTCAGGGCCAAGAGCAAACGGGCTGCTCAGAAGCACCATGAGCAGATGCACGGAATTGATCCTAACTATGAGAATCACAAAACTCAAGAAAACGGGCGGTCTGAAAGTACTGAAAACGCAATAACTAACGGAGAGCCCGATGTAACGTTTCCATGTGAACTGTGCGCGAAGACGTTCCGTTGGAAGACGTCTCTTAGGAAACATTTGGAGACTCATCGGATAGAGGCGGGCCAGAAGCGGCGGCCGTACTGCGAGCCCTGCAAGCTGTCCTTTACAACCACGTCGAACCTCCAGAAACACGTCAAGACCAGTTCCAAGCATCAAATCCAGCTAAAACTTAGGAAGCTGAAAGAGACGCTACCCGAAGACGGCACGAGCCCGGAGAAGCAGCAGGCGCACATCGAGGAGATCAAGTGTTCCGTGAACAGCGCCCGGCAGCAGTACCCGTGCGCGCACTGCGGCAAGCGCTTCCAGTGGCGCGGCAACCTGCTGCGCCATCTGCACAGCCACGCGGCCAGAGCCAACGGCGAGCTGGCGTGCGCGCCGTGCGCGCGCACGTTCTCGTCGCTGGCGACGTACAAGCAGCACATGCTGGCGTCGCGCGCGCACGTGTCGGAGCAGCAGCTGCGGCACGCGTGCGCGGACTGCGGGCGCCGCTTCGCCAACAAGACGCGCCTGCGCGACCACGTCGACTGGGACCACCGCAGCCACTACAAGCACGCCTGCGACGCCTGCCAGAAGGTGTTCAAGAGCCACACGTCGCTGTACCTGCACCGGCAGGTGGTGCACAAGAAGGACCACGCGGAGCATCTGTGTGACCACTGCGGGAAGCCTTTCCCGAACCACGCGAAACTTCGGAGTCACATAATAGCGCTGCACACGATGGAGTCCCCGTACGCGTGCGGCAGCTGCGGCGCGCGCTTCAGCTGGCACTCGTGCCTGTCGCGCCACGTGCGCCGCGTGCACAAGCGCAAGTAG
- Protein Sequence
- MAALDHSFCCGCLCSGRKMIVIEDFWKKQCFLQIISEIPMCQPEGVPVWLCWECEALIRRFTDFKQQVKYAYRTLHEFGKSNLNTDQLHRVPKLTIHKSSNINITESHQSKQPDIDSEPVITESQPIKEEIKLETQENQIKSEIEASDHDNEDDFLINYVTQKKKKHNVRKKKKKVAELYKEVELTEQELEVERREMELREEYVNAMFRCDKCLMSFPNADDLKDHIAVKHELNAAHYQCPICTCSFVSEISYNYHTNKHRRRYECSVCGVRAKSKRAAQKHHEQMHGIDPNYENHKTQENGRSESTENAITNGEPDVTFPCELCAKTFRWKTSLRKHLETHRIEAGQKRRPYCEPCKLSFTTTSNLQKHVKTSSKHQIQLKLRKLKETLPEDGTSPEKQQAHIEEIKCSVNSARQQYPCAHCGKRFQWRGNLLRHLHSHAARANGELACAPCARTFSSLATYKQHMLASRAHVSEQQLRHACADCGRRFANKTRLRDHVDWDHRSHYKHACDACQKVFKSHTSLYLHRQVVHKKDHAEHLCDHCGKPFPNHAKLRSHIIALHTMESPYACGSCGARFSWHSCLSRHVRRVHKRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -