Basic Information

Insect: Tortricodes alternella
Gene Symbol: -
Assembly: GCA_947859335.1
Location: OX401974.1:3101281-3118949[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 9.9 6.3e+02 1.5 0.3 2 11 264 273 264 285 0.81

2 15 0.0012 0.074 13.8 1.1 2 23 418 440 417 440 0.94

3 15 0.0039 0.25 12.2 0.0 1 23 446 468 446 468 0.96

4 15 0.039 2.5 9.0 0.2 1 23 477 500 477 500 0.88

5 15 9.4e-06 0.0006 20.4 2.3 1 23 505 527 505 527 0.98

6 15 3.9e-06 0.00025 21.6 0.8 1 23 533 555 533 555 0.95

7 15 0.00046 0.029 15.1 4.2 1 23 561 583 561 583 0.97

8 15 1.2e-06 7.8e-05 23.2 0.4 1 23 589 611 589 611 0.98

9 15 0.04 2.6 9.0 4.9 1 23 617 639 617 639 0.95

10 15 7.3 4.7e+02 1.9 2.3 1 10 650 659 650 662 0.86

11 15 7.3 4.7e+02 1.9 2.3 1 10 747 756 747 759 0.86

12 15 7.3 4.7e+02 1.9 2.3 1 10 844 853 844 856 0.86

13 15 0.048 3 8.8 2.4 1 21 907 927 907 928 0.91

14 15 0.0032 0.21 12.5 0.2 1 23 938 960 938 960 0.97

15 15 5.6e-06 0.00036 21.1 1.7 1 23 966 989 966 989 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	9.9	6.3e+02	1.5	0.3	2	11	264	273	264	285	0.81
2	15	0.0012	0.074	13.8	1.1	2	23	418	440	417	440	0.94
3	15	0.0039	0.25	12.2	0.0	1	23	446	468	446	468	0.96
4	15	0.039	2.5	9.0	0.2	1	23	477	500	477	500	0.88
5	15	9.4e-06	0.0006	20.4	2.3	1	23	505	527	505	527	0.98
6	15	3.9e-06	0.00025	21.6	0.8	1	23	533	555	533	555	0.95
7	15	0.00046	0.029	15.1	4.2	1	23	561	583	561	583	0.97
8	15	1.2e-06	7.8e-05	23.2	0.4	1	23	589	611	589	611	0.98
9	15	0.04	2.6	9.0	4.9	1	23	617	639	617	639	0.95
10	15	7.3	4.7e+02	1.9	2.3	1	10	650	659	650	662	0.86
11	15	7.3	4.7e+02	1.9	2.3	1	10	747	756	747	759	0.86
12	15	7.3	4.7e+02	1.9	2.3	1	10	844	853	844	856	0.86
13	15	0.048	3	8.8	2.4	1	21	907	927	907	928	0.91
14	15	0.0032	0.21	12.5	0.2	1	23	938	960	938	960	0.97
15	15	5.6e-06	0.00036	21.1	1.7	1	23	966	989	966	989	0.96

Sequence Information

Coding Sequence: ATGGAAGTCTTTCTGTATAATTCTACAGTTTGTAGATTATGCGGTGAAGAAAATGATAATGGAACATTACTGTATACTTGTGAGGAAAATAGTCAGAACTTAAGTGAAATTATTAACACATATTTACCGATAAAGGTATCAGACGATGGGCAGCTGCCGCGGACCATTTGCCCAGGATGTACAATACAAATAGAAGCAACCGTGGAATTCATAAATTTAATAGTTAATGGACAGAAAATAATTCGGGAGCTCCATCAGAGAGAAAATGAATACAAGAAGACATTGCTTATCAACTCGGCCACAAGCGAGCCAGAGATTATCACTGAGAAGATCCTGTATGAGATTAATACAAGCAATGGAGTGTACCAAGTTGAACACCCCATTGCCCTGCAAGTGGCCGGGTTGGAGAAGCCCAAACGGAAGCGAGGCAGGCCGCCAAAGAAGCCCAAGACTACTGAGGAGTTGGCAAAGGAAGCTGCCACAAGACAGCAGGTCGAGGAGGCCAAGTGTGTACCAAAAGAGGGAGAGGATGTGCCTGGCAAGAGGAGGAGGAAAACGCCGACTAGGTTTAAGGAAGCTGTGCAGGGTAAAGAGTTAGAGCGGATATTTAAAGAGGAGGGAGTGACCGACGGCGAGGACAGCGACCCGGACGTGAAGCCCGACGAGCGGCCGCTGGCGCCGAAAGAGCCCGAGGTCATCGGCCATCTGGAGGCCTCCGGGGAGCTTGTTGTTGTTGTGAAGGGGAAGGGAAGGGGCAGGCCGAAAGGTCGCATGCGGCCGACGCGCGAGCAATGCGCCATCTGCGGCATGGAGTTCTCGTGCGTGGGGCGCTACATGTCGCACGTGGCGGCGCACGGGCCCGTGCAGTACCGCTGCGGCTGCGGGCTGGCGCTGCCCACGCGCCTCGCCTTCACGGCGCACCAGCGCGCCACGCGCCACGACGGCCAGAGCGTGGAGCGCCGCGCCGAGCCGCAGGCGAGTGCGTCGCCAGTAAAAGAAGATCCGGCACCAGAAACGGATCCAGAACTGGCGTCCGTGGAGAAACTTGTGAACAACGTTCAAGAGGCGATTTTACCGACTGCCGTGCCCGAAGCGACCGAAACTCCGGCTGAGCCCGCTGTGAACGGCGAGGAGAAGGAAGTTGTTGAGAAAACTGAAGCAACATTATCATCAACCGCCGTGAACGCGGACGCAGAACCGGAGGTGGAACCGGAGACGGTAGTTCTGGGTCCCTCGGGGAAACCGAAGCTCAAGTGTTCACAGTGTGACAAGATGTTCAGTAACAAGCAAAGCCGCTCGCTGCACATTAAGGCGGTGCACGAGGGCCAGCGGCCGTACGCGTGCGGCGAGTGCGGCGCGGCGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCGCTGTCGCACCGGCGCGCGCCGCCCGCGCGCGGCTTCGCCTGCGACCTCTGCGGCAAGGTGCTGAACCACCCGTCGTCGGTGGTGTACCACAAAGAGGCAGAGCACGCGGGGCAGCGCTACGTGTGCGGCAAGTGCGGCAAGCTGTTCAAGCACAAGCAGCTGCTGCAGCGGCACCAGCTGGTGCACTCCCAGGCGAGGCCCTACAGCTGCAAGATATGCGGCACGTCGTTCAAGACGAAGGCGAATCTGCTGAACCACTCGCTGCTGCACTCCGGGGTGAAGCGGTTCGCGTGCGAGCTGTGCAAGCACCGGTTCGCGCACAAGACCAGTCTGACGCTGCACATGCGATGGCATACAGGGCTGAAGCCGTTCTCGTGCGCCACGTGCGGCAAGAGCTTCAGCCAGAAGGGCAACCTGTCGGAGCACGAGCGCATCCACACGGGCGAGAAGCCGTACCTGTGCGCGCACTGCCCGCGGCGCTTCACGACCTCCTCGCAGCACCGGCTGCACGCGCGCCGGCACGCGCCGCTCGCGCCGCACGCGCAGCCGCCGCACGTGTGCCAGCACTGCGGCAAGCGCAGCACCGGCTGCACGCGCGCCGGCACGCGCCGCTCGCGCCGCACGCGCAGCCGCCGCACGTGTGCCAGCACTGCGGCAAGCGGTAGGTGTCTAGTGACGTCACAGCAGCACCGGCTGCACGCGCGCCGGCACGCGCCGCTCGCGCCGCACGCGCAGCCGCCGCACGTGTGCCAGCACTGCGGCAAGCGGTGTCTAGTGACGTCACAGCAGCACCGGCTGCACGCGCGCCGGCACGCGCCGCTCGCGCCGCACGCGCAGCCGCCGCACGTGTGCCAGCACTGCGGCAAGCGCAGCACCGGCTGCACGCGCGCCGGCACGCGCCGCTCGCGCCGCACGCGCAGCCGCCGCACGTGTGCCAGCACTGCGGCAAGCGGTAGGTGTCTAGTGACGTCACAGCAGCACCGGCTGCACGCGCGCCGGCACGCGCCGCTCGCGCCGCACGCGCAGCCGCCGCACGTGTGCCAGCACTGCGGCAAGCGGTGTCTAGTGACGTCACAGCAGCACCGGCTGCACGCGCGCCGGCACGCGCCGCTCGCGCCGCACGCGCAGCCGCCGCACGTGTGCCAGCACTGCGGCAAGCGCAGCACCGGCTGCACGCGCGCCGGCACGCGCCGCTCGCGCCGCACGCGCAGCCGCCGCACGTGTGCCAGCACTGCGGCAAGCGGTAGGTGTCTAGTGACGTCACAGCAGCACCGGCTGCACGCGCGCCGGCACGCGCCGCTCGCGCCGCACGCGCAGCCGCCGCACGTGTGCCAGCACTGCGGCAAGCGGTTCGCGTGCCGCAGCTCGTGGCTGGCGCACGCGCGGCGCGAGGCGCGCGAGGCGGCGGGCGCGCGGCACCGCTGCGGCGCGTGCGGCCGCGGCTTCGCGGAGCGCTGGGCGCTGCTCAAGCACGCGCGCCGGCACACGGGCGAGCGCCCCTTCAAGTGCCCGCTGTGCCCGAGGGCGTTCGCCGACTGCTCCAACCTCAACAAGCATAAGAAGCAAGTCCACAAGCAAGTGAGCTTGCTGGTGGACAAGAACCAGCCCGCGGCGGCGCCCGCGCCGGTGCCGCCGGGCGCGGGCGACGAGCGCGTCATCTACGTCACGTACGACGCGGGCGCGGGGCCCGGCGCCTTCCACATCATGGACACGGACCAGGTGGCCATAACAAACGAGAAAGTACTAACCGACTGCGAGCTATACACGGGCTCGTCTCTCCTGCGGCGTCCGGAGCTCAACAACCAGCTTGAACACGTCCAAATGGATGAGGCGTTGGTACACGAGCAACTGGAGCAAGTGCAGTTGGGCGAGCAGCTCGAGCAAGTGCAGCTGGACGATCCACTCGAGCAAGTTCAAATGGAGGAACAGTTGGAACACGTGCAGATAGAAGAACAACTGCAGTTGGAGGAGCAGCTTGACTTGGATGAAAACGAACACATAGCGGTGACGGATGAGCAAGGCAACCCGCTGCACTTCACTATGCAGGACGGCACGCGGCTCGCAATCACATCTTCCGACGGGAAATCCTTGCAGGTTATCACGCAAGACGGTCAAACAATCCCTGTGGAGATCAACGGATATGACGACGAGGAGGAGGTGGATAACCCAGACACGATAGTGCATCAACTGAATTTACAGAAGACTGTCGATCCCAACGGCGCTTCCCACGTCGCCCACTATTTCACAATAGTCTAG
Protein Sequence: MEVFLYNSTVCRLCGEENDNGTLLYTCEENSQNLSEIINTYLPIKVSDDGQLPRTICPGCTIQIEATVEFINLIVNGQKIIRELHQRENEYKKTLLINSATSEPEIITEKILYEINTSNGVYQVEHPIALQVAGLEKPKRKRGRPPKKPKTTEELAKEAATRQQVEEAKCVPKEGEDVPGKRRRKTPTRFKEAVQGKELERIFKEEGVTDGEDSDPDVKPDERPLAPKEPEVIGHLEASGELVVVVKGKGRGRPKGRMRPTREQCAICGMEFSCVGRYMSHVAAHGPVQYRCGCGLALPTRLAFTAHQRATRHDGQSVERRAEPQASASPVKEDPAPETDPELASVEKLVNNVQEAILPTAVPEATETPAEPAVNGEEKEVVEKTEATLSSTAVNADAEPEVEPETVVLGPSGKPKLKCSQCDKMFSNKQSRSLHIKAVHEGQRPYACGECGAAFAYPRSLALHALSHRRAPPARGFACDLCGKVLNHPSSVVYHKEAEHAGQRYVCGKCGKLFKHKQLLQRHQLVHSQARPYSCKICGTSFKTKANLLNHSLLHSGVKRFACELCKHRFAHKTSLTLHMRWHTGLKPFSCATCGKSFSQKGNLSEHERIHTGEKPYLCAHCPRRFTTSSQHRLHARRHAPLAPHAQPPHVCQHCGKRSTGCTRAGTRRSRRTRSRRTCASTAASGRCLVTSQQHRLHARRHAPLAPHAQPPHVCQHCGKRCLVTSQQHRLHARRHAPLAPHAQPPHVCQHCGKRSTGCTRAGTRRSRRTRSRRTCASTAASGRCLVTSQQHRLHARRHAPLAPHAQPPHVCQHCGKRCLVTSQQHRLHARRHAPLAPHAQPPHVCQHCGKRSTGCTRAGTRRSRRTRSRRTCASTAASGRCLVTSQQHRLHARRHAPLAPHAQPPHVCQHCGKRFACRSSWLAHARREAREAAGARHRCGACGRGFAERWALLKHARRHTGERPFKCPLCPRAFADCSNLNKHKKQVHKQVSLLVDKNQPAAAPAPVPPGAGDERVIYVTYDAGAGPGAFHIMDTDQVAITNEKVLTDCELYTGSSLLRRPELNNQLEHVQMDEALVHEQLEQVQLGEQLEQVQLDDPLEQVQMEEQLEHVQIEEQLQLEEQLDLDENEHIAVTDEQGNPLHFTMQDGTRLAITSSDGKSLQVITQDGQTIPVEINGYDDEEEVDNPDTIVHQLNLQKTVDPNGASHVAHYFTIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -