Basic Information

Insect: Tortricodes alternella
Gene Symbol: -
Assembly: GCA_947859335.1
Location: OX401971.1:24802655-24813726[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0097 0.62 10.9 0.6 1 23 167 189 167 189 0.97

2 11 0.00011 0.0073 17.0 3.0 1 23 196 218 196 218 0.96

3 11 8.2 5.3e+02 1.7 3.1 1 23 222 244 222 244 0.92

4 11 0.00088 0.056 14.2 2.4 1 23 249 272 249 272 0.98

5 11 0.00013 0.0081 16.9 0.3 1 23 276 299 276 299 0.96

6 11 0.014 0.88 10.5 0.1 2 21 312 331 312 336 0.93

7 11 0.44 28 5.7 0.0 2 23 371 393 370 393 0.95

8 11 0.00077 0.049 14.4 0.2 2 23 409 430 408 430 0.95

9 11 2.8e-05 0.0018 19.0 1.8 1 23 436 458 436 458 0.97

10 11 1e-05 0.00067 20.3 2.8 1 23 465 487 465 487 0.95

11 11 3.6e-05 0.0023 18.6 4.1 1 23 493 516 493 516 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0097	0.62	10.9	0.6	1	23	167	189	167	189	0.97
2	11	0.00011	0.0073	17.0	3.0	1	23	196	218	196	218	0.96
3	11	8.2	5.3e+02	1.7	3.1	1	23	222	244	222	244	0.92
4	11	0.00088	0.056	14.2	2.4	1	23	249	272	249	272	0.98
5	11	0.00013	0.0081	16.9	0.3	1	23	276	299	276	299	0.96
6	11	0.014	0.88	10.5	0.1	2	21	312	331	312	336	0.93
7	11	0.44	28	5.7	0.0	2	23	371	393	370	393	0.95
8	11	0.00077	0.049	14.4	0.2	2	23	409	430	408	430	0.95
9	11	2.8e-05	0.0018	19.0	1.8	1	23	436	458	436	458	0.97
10	11	1e-05	0.00067	20.3	2.8	1	23	465	487	465	487	0.95
11	11	3.6e-05	0.0023	18.6	4.1	1	23	493	516	493	516	0.95

Sequence Information

Coding Sequence: ATGATGATGGGTGGAGACGCCTGGCCGGTGGCGGGCGGGCAGTGTGCTGATCATTCAGCCCAGTTCCCCCTAGGTTTGGAGTTGAACATTGTACAAAAAATACAATCCATTGATCGTGACAAAAACAAATTAACATCATCTCTTACCATCAAAACGCTTATAAATCACAGTGATCTACATCTGCACGAAACTTTTACTCAACAAGAAACTATACAAGAAATTAATTTCACTGAAGTGAAAACTGAAGACGCTTATACCGAAGACAATGATATACAGTTCGATCTGCAGTCATCAAGCGATGAAGTCCTCGTCAAACATCAAAATAAGAAGGTTAAGAAGAGAAAAAAGTTGAAGAAAGAAGTTAAAGTAGATAGGAGAAGAAAACCTGCCAGTGAAGTGTTGAATGAAGCGTTATTTACCATTAATGATTTGTCTTATGAAGAGCAGATAGGAGAAATAAGAAAGAGGAAAGAGTCTTCGAATTATAAAAACTCGGTGTTCAAATGTAAGGATTGTTTCAAAGGTTTTTTGGACGAAGATGCATACAATAGTCATGTTATTAGACACACAGATCAAAGCGGGCGGTTCGTGTGTGAAATATGCAAGACCCACTTCAAGCAGCAGCACGCCCTGCGGAACCACGCCGCCTCGCACTTGCAGAAGTTCACCTGCAAATGCTGCCCATACGTCACCACTCGacgTCACGCAGCGAAGTTACACGAGGAGTGGCATAATGGCACGCGATATCAGTGCCCGCACTGTCAAGAATACTTCGTTAAATTCTCAACGTACATGGGTCACATCAGAATCAAGCATCCGTCGGACTTCGTGTGCCAGCTGTGCGGGTACTCCTTCGTCAGCGAGAAGGGGCTGGCCCTCCACCAGAAACTGAAGCACCGGTTCCATCAGCAACCGATACCTGAGAACGGGCCACGTTGTCAAGAGTGCGACGTCCGCTTCGCCACCGCAGAAGCCCTGGACACGCATGTCAAATTGTCGGCCAGACATGGACACGACGCGAGTAAAGAAAATAGTGGTCGCAAAAGGCGGCGAGCAGTGGAGTGCGACACGACGGCGCGCCGGCCGCGGGACAAGCCTGAAGGGCCCATCCCTTGCGAACAGTGCGGGGTGCAACTCCCGGATTCTCTCGCGTACTACCGTCACTTCCGACGTGCGCACCCCGACAAGAATCGAACCAACTACCCGTCCATGAAGTCCAAGAGTATGTGTGAAGTTTGCGGCAAGATGTTTCAGAGCCTAGCGCTGCTCCAAGACCATAGCTTCACCCACACGGACGCGAAGCTGTTCGCGTGCCAGCAGTGCGACAAGACCTTCCAGAGGAAGTACCGGCTGATCGCGCACCGGCGCCTGCACCGCGCGCCCCGTGCGGCGCACGCGTGCGGCACGTGCGGCAAGCGCTTCACCACGGCCAGCAACCGGCAGCGGCACATGTTTAGCCACACCGGATTGAAGCCGTTCAAATGTGAGATGTGTGGCAAGTGCTTCAAGCACGCGAGCGAGAAGCGCGCGCACATCACGTACGTGCACCTCAAGAAGCCCTGGCCGAAGCGCGCGCGCGGCAAGCGGCGTCCGGACACCAGGCAGGTCCAGGCCCAGCAGTTGATACCTCACGAAACGGACATCGTGCAGCCGCTGTGGCCGGCGTGCAGTGATCCCAAAATTGGGCTCATGATGGAAGACAAACCCATGTACCTAATGTGA
Protein Sequence: MMMGGDAWPVAGGQCADHSAQFPLGLELNIVQKIQSIDRDKNKLTSSLTIKTLINHSDLHLHETFTQQETIQEINFTEVKTEDAYTEDNDIQFDLQSSSDEVLVKHQNKKVKKRKKLKKEVKVDRRRKPASEVLNEALFTINDLSYEEQIGEIRKRKESSNYKNSVFKCKDCFKGFLDEDAYNSHVIRHTDQSGRFVCEICKTHFKQQHALRNHAASHLQKFTCKCCPYVTTRRHAAKLHEEWHNGTRYQCPHCQEYFVKFSTYMGHIRIKHPSDFVCQLCGYSFVSEKGLALHQKLKHRFHQQPIPENGPRCQECDVRFATAEALDTHVKLSARHGHDASKENSGRKRRRAVECDTTARRPRDKPEGPIPCEQCGVQLPDSLAYYRHFRRAHPDKNRTNYPSMKSKSMCEVCGKMFQSLALLQDHSFTHTDAKLFACQQCDKTFQRKYRLIAHRRLHRAPRAAHACGTCGKRFTTASNRQRHMFSHTGLKPFKCEMCGKCFKHASEKRAHITYVHLKKPWPKRARGKRRPDTRQVQAQQLIPHETDIVQPLWPACSDPKIGLMMEDKPMYLM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -